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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0334500 |
| Transcript ID | LotjaGi1g1v0334500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G50915.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q93W88|BH137_ARATH Transcription factor bHLH137; TrEMBL-Plants: tr|V7AW58|V7AW58_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0334500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79304975..79307984) extracted from Lotus japonicus Gifu genome v1.2.
TAAAGATCACCAACAAACTACCCAAAAAGCACTACTTTCTACTCTCTAATGTATAGTTACTAGGACTCATTTATTATTAT CACTAATATGAGAGAGAAGTTTTAAGTTGACAGTATTAGACTAGTCAAATATACTGCCTCTGCATGGGAACAAGTTAAGT TACTGCAGCTTTAAAATATTTCAGCAATTTATGTGCCCAGATTCTATAAATAGACCAGACCCTTTTTTGTCACAGACCAA CTTTTCCTGAGTCCTAACTAACTCCTCTCCCACTTTCTTCCATCACTTTCTTGAGAACTTGGCAACTTGCATTTTTCAAA ACCTTGAGCTCTCACCACAGATATGGCAGCTTTTTCATACCAGTGTCACCCTTTCCTTGTTGACCCATCATTCTTGCTCA ACATAAACACTGGTTCTCCTCCTCTTCCTACTCAATTTCCCCTTCATCAAGAAGCTTCTCTGAATGTTACAAATCAGGAC ACAAGCTGTGCTGATCAGAGCTCCAAAATCACCATCAGTGACAATGAGCCTTCTATAACAAAAAACCTTAGTCCTCAGTC TTCCATGGTGGTAGACAAGCTTGAAATTGGTGAACAGGTCACTCAGAAGGTGACCCCTAAGAGAAGAAGCAGAAAAGATT CTTCATTGAATGAACCCCAATCTAAGGTAATTGAATTTGAGCAGAAATGATGGTTTATGTTCTTTTCTGTTCCGTTCTGT TATGTGCTGTTAGAGTTTTGCTTTATATATTGTTGCCCAAATTTGGTGTTCTTGATTTATAGTTTGATTGTTTTGTTCTC ATTTTGTTGATTATTATAGGATGATGCAACCGAAGGGAGAAGCAAGAAACAGAAGAAGAGCAATGGTGGGGTGAAAGATC AGGACAAGGCAAGAACTGAGAAGAAAGAACAGAGAAAATGTCCGGAAGAGCCCCCAACAGGCTATATCCATGTCAGAGCA AGAAGGGGTCAGGCCACGGATAGCCACAGCCTTGCTGAAAGGGTACACTCTCATCTTTAATTTGTACACATCCGCGTAAT GCAGACACTAACGGTGACTCGAAATGAAAAGAAAAAAATTAGAGAAATAAATAAATAAATGTGATATATAATGAATATGA AAGAAAAAAAATAGATAAAAATAAAAATGAGATGTATGCATTGTTGGGATGATGTCTGGTATCATTAGGGAGGCCCCTAG GGTCCTTTGTTGATGGTTGCCCACTTGGATGTGTGAAATTACTAGAATGCCCTTGAGTTGTTTTCAAGTCTCTTTCTCAA TGTTGCTAAAATGTTTTCAGGTAAGAAGGGAGAAAATAAGTGAAAGGATGAAAAGGTTGCAGAGACTTGTGCCAGGCTGT GATAAGGTAGGTAAAGTTAAACTTCATGCCAGCACACATAGGCCCAAACATTAATCTAAACTAAAAAATACTATTAAATT AATTTTGATATTGATATCATTATTTTAGTTTATGATTAAATCCTTCATCCATTGCTTTATACTTTTGTTTTTTTCCACTT CATCCAACAGCTTCATGTGTTTTGGTTTATAACTAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGT TCAGTCATTACAGAATCAAGTGGAGGTAGCTAGCTACTACCAATATGCTCAACTATTTTTTCTATGTACCTTATTGATTA CCTACAATGTGTATACTAATAAAGCTACCTATGCTTCTATCTTCTGCAGTTCTTGTCAATGAAGCTTGCTTCTGTGAATC CCATGTTCTATGATATGGCAACTGACCTAGACACCCTCTTGGTTAGACCAGAGGTGAGGAACAAAACCCCACTAATTTAT TTACATTTGCAACTAGAACCACTCAAATTGAAAAGTCTAATCATGAAATTAACTTGGTTACTTTGAATTTTTCAGAAATT AAATAGCTTAGCATCACCATCACCTCTTTCATCAGTGTCACATTCACATTGCAACAGTCCCAACCAAGCCACAACAACTT TTGCTGATACAACCAATTCCATCTTCCACACTGCTAATGACTTCCTTTTGGATAATTCATCACCTTTTTTTCTTCAAGGG CAGAGATCAAATTTACCATCTGAGGTATATATGAACATAAACTATTGAAGATAATTTCTTTTTAACAAAAAGAAAAAAAA GGCTTTAATTCTTCTTTTATTATTCTGACAAATACATCATTTTCAGGAAACGGGTTGTCAATTCTGGGACACAGAAGATC AGAGACAAAAGTTTCTTCTTCATCCATATGGATTCAGCAACAATTTAAGTTCCTTTCATTAATTTAAAATTTTCAGAGCT GCCCCTACAAAACAACAAACATGTTGTAAGCTTTCAATTCCTACCCCATATTGAAACTTATCATATAACTTAACAATAAA TGCTAAGCTTTTATTTTTATTTTTTCAGGATTTAGCTTTTACACTAGGTAAGGAAATTTCAAAGCAGCACAAGAATGATT CAAAAATCAAGTTGAGCATCACATTACTAGCAAGAAAAACCAAAGCTACATTTGGTATCAGTACTATAAGTACATCGGAT TAAAAGGGACCATTGAAGATGAATAAAGGGAATCAAAATCAATGGATCATGATGAAGAACCAAAAAGGACAGAAATAGCC GACCAAATATGACAGTATCTTTTTCTAGATCATTGTTCTGTTTCAGTGATTTTTGACCCTGCAAGCAAGGACTAGTACTC AAGCTGCACAAATTCCGGAAAACATTGAAATTTATGATAGCATGTAAATTATTGGAACTAGTATTGATTCTAGTGGTGGC AGTTATTCTGTTGGTAGTACAGTTAGTTTTTACCATTATTGAGAAAAATGGACGGTTCATGCTGCTGTACTGTTCATCAT GTTCTTGACATGACTGGCCATGAATTTGTTGGTCTAGTTATCTTTATGTATATGTAATCTGCAGAATCTTCAGAGTTTTT GCATCATGATGGATGTTATTGCTATTAATAATAATATCATTATTATTTTA
CDS sequence (LotjaGi1g1v0334500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTTTTTCATACCAGTGTCACCCTTTCCTTGTTGACCCATCATTCTTGCTCAACATAAACACTGGTTCTCCTCC TCTTCCTACTCAATTTCCCCTTCATCAAGAAGCTTCTCTGAATGTTACAAATCAGGACACAAGCTGTGCTGATCAGAGCT CCAAAATCACCATCAGTGACAATGAGCCTTCTATAACAAAAAACCTTAGTCCTCAGTCTTCCATGGTGGTAGACAAGCTT GAAATTGGTGAACAGGTCACTCAGAAGGTGACCCCTAAGAGAAGAAGCAGAAAAGATTCTTCATTGAATGAACCCCAATC TAAGGATGATGCAACCGAAGGGAGAAGCAAGAAACAGAAGAAGAGCAATGGTGGGGTGAAAGATCAGGACAAGGCAAGAA CTGAGAAGAAAGAACAGAGAAAATGTCCGGAAGAGCCCCCAACAGGCTATATCCATGTCAGAGCAAGAAGGGGTCAGGCC ACGGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGGGAGAAAATAAGTGAAAGGATGAAAAGGTTGCAGAGACTTGTGCC AGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCATTACAGAATCAAGTGG AGTTCTTGTCAATGAAGCTTGCTTCTGTGAATCCCATGTTCTATGATATGGCAACTGACCTAGACACCCTCTTGGTTAGA CCAGAGAAATTAAATAGCTTAGCATCACCATCACCTCTTTCATCAGTGTCACATTCACATTGCAACAGTCCCAACCAAGC CACAACAACTTTTGCTGATACAACCAATTCCATCTTCCACACTGCTAATGACTTCCTTTTGGATAATTCATCACCTTTTT TTCTTCAAGGGCAGAGATCAAATTTACCATCTGAGGAAACGGGTTGTCAATTCTGGGACACAGAAGATCAGAGACAAAAG TTTCTTCTTCATCCATATGGATTCAGCAACAATTTAAGTTCCTTTCATTAA
Protein sequence (LotjaGi1g1v0334500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAFSYQCHPFLVDPSFLLNINTGSPPLPTQFPLHQEASLNVTNQDTSCADQSSKITISDNEPSITKNLSPQSSMVVDKL EIGEQVTQKVTPKRRSRKDSSLNEPQSKDDATEGRSKKQKKSNGGVKDQDKARTEKKEQRKCPEEPPTGYIHVRARRGQA TDSHSLAERVRREKISERMKRLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDMATDLDTLLVR PEKLNSLASPSPLSSVSHSHCNSPNQATTTFADTTNSIFHTANDFLLDNSSPFFLQGQRSNLPSEETGCQFWDTEDQRQK FLLHPYGFSNNLSSFH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 43 | 268 | 226 | 2.6E-77 | – | |
| PANTHER | 43 | 268 | 226 | 2.6E-77 | ||
| MobiDBLite | 59 | 167 | 109 | - | – | |
| MobiDBLite | 59 | 75 | 17 | - | – | |
| MobiDBLite | 88 | 167 | 80 | - | – | |
| Gene3D | 156 | 229 | 74 | 3.7E-14 | ||
| SUPERFAMILY | 157 | 226 | 70 | 3.79E-17 | ||
| CDD | 157 | 214 | 58 | 1.11291E-10 | ||
| ProSiteProfiles | 159 | 209 | 51 | 15.948 | ||
| Pfam | 163 | 210 | 48 | 3.1E-7 | ||
| SMART | 165 | 215 | 51 | 9.8E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0334500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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