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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0334800 |
| Transcript ID | LotjaGi1g1v0334800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein 4; TAIR: AT5G50900.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13; TrEMBL-Plants: tr|A0A0R0JI78|A0A0R0JI78_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0334800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79372574..79379255) extracted from Lotus japonicus Gifu genome v1.2.
CATCAACATAAATCCCGCTCTTTCGCGCTAACCAAGTAGCGCGAGTCAAACCCCACACCGCGATTGTGCCTCACGCTCCA AATCCTCGCGTCGGTGACAGACACACTCTCTCTCTTGAAGAAAACACGGTACTCACACTCTCTCTCCTCTGTTTCTTCTT GTTCTTGTTCTTCTCATTTCTCACTTTCTCACTCACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGCTG AAGAAGCATGAAGGAATCGGATCCTATCACCGATTGCGTTCACCTTCTAACTTCCCTCCTCGACGAAGAAATCCCCACCG TCCAAAACCTCAAAACCAAGTGGTCACTCGTCCGAGTCAAACTCACCAACCTCCAAACCCACCTCACCGATTTCTCCGCC GAGTTTCCCTCCTCCTCCGCCACCAACCCACTCTCTCTCGACCTCTTCCACTCCCTCTCCGCCACTCTCCACTCCGCCGT CTCCCTCGCGCAACAGTGCCACTCCCCCACCCACCTCCCTCGCGGCAAGCTCCAAACCCAAAGCGACCTCGACTCCCTCC TCGCCACCCTCGACCGCCACCTCTCCCACTGCGACATACTACTCCGTAGTGGACTCCTCCTCGACGCCCCCGCTACCTCC AAGCGCGACGCCGTCCGATCCGCCTCCAGAAACCTCATCACCAGACTCCAAATCGGTGAGCCTGAGTCCCGCGCCGCCGC CATGGACTCTCTGCTTGCTCTCCTCCACCAGGATGATAAGAACGTCACCATCGCCGTCGCGCAAGGGCTGGTTCCGGTGC TCATCCGCCTTCTTGACTCCTCCTGCCCTGAAATGAAGGAGAAAACCGTCGCCGCCATCTCTAGGGTTTCCACCGTCGAT AGCGGCAAGAACGTGCTGCTTGCAGAAGGGTTGCTACTGCTAAACCACCTCCTTCGAATTCTGGACTCTGGTAGCGGGTT TGCGATAGAGAAAGCTTGCATAGCGCTTCAAGCGTTGAGTTTCACCAAAGACAACGCCAGAGCAATTGGGTGCAGAGGTG GAATCTCGTCGCTGTTGGGGATCTGCCAGGCTGGAACCCCTGGCTCGCAAGCTTCTGCGGCGGCGGTTTTGAGGAATCTG GTGAAGTTCACCGAGATCAGGCAGAATTTCGCGGAGGAGAATGGGGTGGGTGTTCTGTTGGCGGTGGCTTCTTCTGGCAC TGTGGTGGCTCAGGAGAATGCGATTGGGTGTTTGGCGAATTTGATCTCGGAGGATGAAGGCTTGAGGCTGACGGTGGTTA AGGAAGGTGGGGTGGGTTGTTTGAAGAATTTCTGGGATTCAGGTCCACCGGTTCAGAGTCTCGAGGTTGCGGTTGAGGCT TTGAGGCACTTGGGTTCGAGTGCCCCCATTGCTGAGGTTCTTGTTGCGGAAGGGTTTGTGGGGAGGGTGATGGGGTTGCT GAGTTGTGATGTTCTCGCGGTGAGGATTGCGGCGGCTAGAGCTGTTCATGCTTTGGGGTTAAGCAGCGGGAAGACGAGGA AGGAAATGGGAGAATGTGGGTGTGTTCCTGGTTTAATCAAAATGCTTGATGGGAAAGGTGTGGAAGAGAAAGAAGCTGCT GCAATGGCATTGTCGGTTCTGCTAATTCACCCGGGGAACAGAAGGGTGTTTCGTAAGGATGAAACAGGGATAGTGAGTGC GGTACATCTCTTGAACCCGTCGTTGCAGAATCTGGATAAGAAGTACCCTGTTTCGCTGCTACTCTCGCTCGTGCACTCCA AGAGTTGCAGGAAGCAAATGGTTGCAGCGGGGGCTTGTGTACATATGCAGAAGCTTGTGGAAATGGATGTCCCCGGGTCC AAGAAACTCTTGGAAAGCCTTGGTCGTGGTAAGATTTGGGGTGTTTTTGCTAGACCCTAGAGATGGATCAACATGAACAT GAACATGGATAGAATAAATCATGGTACAGGAACAAACAAGCAATGGTTATTCATTGATCTGTATGTACGATAGGCAGGCG TGTTCAGGTTTTTCCCTTCTTTCTTTTCCCCTTTCTTGTAATTATTAATAATTGATATTTATTTCTAATGTATGTAGAAG TAAGTTTTGTTAAATGATTTTTGTGGGAACTTGATTTTGTTTAGGAGGATGATAAAGTACATGATTTTGCAGTGTATTGG TAGAGAGTATGACCAGTCACATAACTCAGTTGGTTTGCATGTGTAGAGGTAGTTCAGAATTAATTGCTAAAATGCTTCCT TGCATATGATATATGATGCGTTTACTTGTTATGCAATTGAATATGTTCAGATTGGAATAGGATATCTGATTTGCACAGAG CAGAATAGGTTATAGGATGAAATAAAAGTAAAAATGATCATAAATGCATTGAATGAAATTGAGTTATTGAATGAAATCGG ATGAAATAAGACTTGATGAAGTTTTAGTCTATTTCACTCTACCTAAATACTACTCCCTCCGTTCCAAAATGTAGGTTGTT TTAGGTTGTGCACATTGTTTAAGGGCTCATTAATTAATAATTTTTTTGATTAAAATACCCCTATTTAAAGTTGTGTTATA TTAAGGAGAGAGAAATGTTATTATTGATTAAGTGGATAGTGAGAGTTGTGATAGGTGAAAATTGAAGGTGGTAATTAAGA GATATAATATTAAATGATGGTATATAAGGAAGAAAGAGAGAAAAAGTGCATTGGTTTTGCAAAACAACTTATATTTTGGA ATATGATATAAATTCTAAAACAACTTACATTTTGGAACGGAGGGAGTAGTTGCTACCATTAAATCCTAGTACAGTACGCA GATAGATGGTTCTTTAAGCAAGTTATCAAGGGTTTTAACATTGGCTGTGTTTGGGAAAAAAAATTGTTGAGAGAGGCAAA AGCTACTTCGGTGATCTTTACGCCTCAAAGGGATTAGTCTCTCGGGGACACCTTGGTGAAAAGAAAAAGAAAACTAGTTG CCAATTCTATTTCGTTTTTATTCAATTTTTTTTATCAATTCTAGCTTAGACCAGTACTACAAGATAGTTACATCTTATAT TGGATGATTGGATTAGAGAACTGGTTCTGTATTAGCCAGTATTAGCCAGTAGGCAGTAGATATGACTTCTATTTGCATAT TAATGCATTCTGGAGCAAGGAACATGGCGATCCAATTTCAGATGATGAGTTGAAGAAAGTTGCCTAATTTACCTATCACA AATCATAAATGCTTTTTACACGAGCAAGATACATACATGTTCCTGGAAATCCCAGGACCCAGAGCACTATTGATGGGGTT CTCATAGTACAGTGTACATGTTTGGCTGTACCATGTGTGACAGATCCTCTTATTCACTTTCTTGGTGATTTCATCATTGC TTACATAGTTACATTTCATTGATGTCTACATCATATACACCTCCTTGAAACTGATTTCATGCGTCTTTGCCTTAATTAGT AATGGATTAGATTATTGAGAGGTTTTGATCATGTGGGAATTTCCTCAATATCTTTCTGGTGGGGGCTGATGTAATTATCT GAGGGTGGCATGTGCAATTGTTCTTGACCATGTGCTTTTGGTCTTTGGATTGCCCAAATTGCAGTCTTGTTGTCTGTTGC GGTAACACATTAGGTCCTACATTGATCTCTTCGCTCACCTCTACACACTTGGGCTTTGTCCTTAACTCCTTAAATAATTA TCTGTTGGAATACCATTCAACTGAGAATTTCCTTTGCTGCATTGTCATTTTCCTTGCAAATTGAAGCTGGTGCAAAGATA CAACAACTACATAATGACAGCTATGTAGGGAATCTTCAAATTCGGGGGCATTTTTTTAAAATCAACAGTTCTCTAGAATC CTAGTTTTCATGCGTGCCAACTGTATGACACAAATGAAATAAGAAAACCTTGATCCTGGAAGTTGCGATATGGGTCATGA AGATGATTTTTCAATTTAAAATTAGAGTTAATCGTCTACTTGGCCCCTGTCTTTGTCTCGCCGTCTGAAATTAGTTCCTC CCCGGAAAATTTACAAATCTGGGTCCTCTCGTTTGCAATAAGTCTGGAGCAGGTCCTCGCCGGAGCCCGGAGCTTCGACG AGTGATGAATTAGCATGGTGACTGAATAAATGAGGCTGACGTGTCAAGAAAAAAATATAAAAAACTATAAATTAGTTTTA TTTAATTAACGGTCCCTAATTAACAAAAATAAAACTAATTAAAAAATGTAATCCTAAATTAATTAACAAAATCAAATTCT CCTTATCTCTTCTCTACCATCAATCAAAACCAGAAAATAATCCTAAACCCAGAAAAACATCTCACATGCTAGAAAATTCA GAACAATGCCCACACTCCAGAACCCAAACGGAAATCTTTAATATGCACAATCTTTAATCAGATCTGGGTTCATCCTCATC CCCAACTCCTCCCTCTCAATCTTCCCAACAACTAAAACAACAAATTGTTTAGTTTGTCAGAAGAGAGCTGCCTTCCTTGA TCAATACAGTCATTTGATTTATATACGCTTTGGGTTCTTTCCCAACAATTTCTGGAGTTGCAAAAGAATACCTTATATGC ATATGCACATGTAAATAAAAAAACCGCATAACACGATGAAATAGAAATCTATACTTATCAACAAGGCTATTTGTAATACA ACAATGGGTACAAAAATGCACCCTTCAAATTAACCGGAAAGGAACTACTGAAGAAACCAATATCAACACTCTCTTCAATG GAGGCCACCAGAAATTCCACATTTTTTGGTATTACAATTGAACCACCCCCAACCCCAACGAACCCACACCCCGTCCCCAC TGCAACCATGAACCACCCCCACTGCAACCTCTTCCCTCAACCAGATCTACCTCACTGATCACCCCATCTCCCTCCCCTCA ACCTCATGATACTCAGATCCATGACCTGATTACCAGCAACAGCAAGAAGAAGAAGATGAAGGGATAAAAAGCCAACCAGA AATTGATATATCAAGTGATAAAAATCCAGATACATCTTCAAAAACCCAACAATCAAACCCCAAATCGCAAGAGACTGAGG TAGCAAAACCCACAACTCCAACTTCAACAACCATTCTCGTTTAAGCTCAACAAAGCTTCGAATCTGCTTCAGCAACAACG GTTCTACTTCTGCACCTTCGAATCACCACCACCACCAATTTGCCCTGGTGGCTCTGACGGAGATCGAAGCGGAGGAACCC ACCCCTGAAACACATCCCCACCCTCACTCGCAACCCAACCCACCCCCATTCCCACCCTCTCTCGCAACCTACGCCACCCC CATCCTGCGACCTATACCCCAAATTAAGCAGCAACAGAACTGGGCGGTGGAGGACGATTCGCAGATCTGAAAGATGAGAA GATGAGAAGGCGCTGAAAGGTTTGAGGTGAGAAGGTGAGAAGATGCAGAAGAAGGTTCTGGACTTCTGGGTTTGAGAGGA AGAAGAAGCAATTGATTTAGGGTTTTTTTAATTTTTATTATTTTTGGGGAAATTGATTTATTAGGTAGATTATTAGGTTA GATTTATTAATAGATTTAATATTAGTTAATTTGATTAATAAATCTGACTTGTTATTTTTTTAAATCCACATAAGCTTACT AACACAGTCACCATGCCAATTCATCACTCGCCGGAGCTCCGGGCTCCGGCGAGGACCTGCTCCAGACTTATTGCAAACGA GAGGACCCAGATTTGTAAATTTTTTATAAACTGGGTGTATGTTCTACATGTAGTAAAAAAGTAGAAAGTCAAAACAGAAA TACACACCGAAACAAAGTGAAAAACCTAAATGCTTTTCCATTGAAATAAAAGCACATTTACTTTTGGGGTTACTGCAAAA TAATCACGTCTAAATGTATTTGGATATCAGTTAAGTATGAAGTGAATAGATTTTTCATCTCAATCATATGAAGAGGTACA TCCACTATTTGTCTGTGATGGAGATATCCAAACATAGTAGGGACTAGGGACTGGGAGTGACTAATTAAGTTTGGGACCAA TTATATCATGACTAATTAAGTTTTTTTTTTCTTCCGGTAGCAGACTAATTAAGTTCTTTAATATACATAAGGACTCATTA CAAAGAATGTAAGCCAGGGAGAACCCATGAGGGTTTAACTTTACAGGCTACAAGATCAAGTAAAATAATGTGGGAATGGA ATAATTGCTATCTTAATAATGCCAGGTTCGAAAGAGACAGGTCAGCAAGCTATGTTTGGTAAGATCACAGGATTACAGTT GATACTGCATACCAACCTATAAAGGCAAACACAGTAGTAATAGGTGATATAGATATTTGTTACAACGCAGTTCGTTGGCT TTGCCTCTTTGTGCAGCCATGCAATTATTTCGATTTGGGGCAACAAATGAATTCTGTAAAAGTTTATTTTTTCATAAAGT GGGCTCACGATGTTATTTGCCATGTTCAAGGATTGCTCCGTCGAGATTGGCGGGTGGTTATGCAGCTTATTCCTAGCGAG AAGAATTCTGCAGCGGACTTGTTAGCACGGGAAGCTTCCCGGGAAGCTTCTCCTAGATGCTACTGGCGACATCCACCTGA TGGTGTTAATGCTTTACTGGTGCAAGATGCTATAGCGTAGTTTTCCGTTTATTTCCTTATGTAACCAAAAAAAAAAAATA AGGAATTGGAAATTGGGTGTATAATTGTGGTGTTGAACGGTT
CDS sequence (LotjaGi1g1v0334800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAATCGGATCCTATCACCGATTGCGTTCACCTTCTAACTTCCCTCCTCGACGAAGAAATCCCCACCGTCCAAAA CCTCAAAACCAAGTGGTCACTCGTCCGAGTCAAACTCACCAACCTCCAAACCCACCTCACCGATTTCTCCGCCGAGTTTC CCTCCTCCTCCGCCACCAACCCACTCTCTCTCGACCTCTTCCACTCCCTCTCCGCCACTCTCCACTCCGCCGTCTCCCTC GCGCAACAGTGCCACTCCCCCACCCACCTCCCTCGCGGCAAGCTCCAAACCCAAAGCGACCTCGACTCCCTCCTCGCCAC CCTCGACCGCCACCTCTCCCACTGCGACATACTACTCCGTAGTGGACTCCTCCTCGACGCCCCCGCTACCTCCAAGCGCG ACGCCGTCCGATCCGCCTCCAGAAACCTCATCACCAGACTCCAAATCGGTGAGCCTGAGTCCCGCGCCGCCGCCATGGAC TCTCTGCTTGCTCTCCTCCACCAGGATGATAAGAACGTCACCATCGCCGTCGCGCAAGGGCTGGTTCCGGTGCTCATCCG CCTTCTTGACTCCTCCTGCCCTGAAATGAAGGAGAAAACCGTCGCCGCCATCTCTAGGGTTTCCACCGTCGATAGCGGCA AGAACGTGCTGCTTGCAGAAGGGTTGCTACTGCTAAACCACCTCCTTCGAATTCTGGACTCTGGTAGCGGGTTTGCGATA GAGAAAGCTTGCATAGCGCTTCAAGCGTTGAGTTTCACCAAAGACAACGCCAGAGCAATTGGGTGCAGAGGTGGAATCTC GTCGCTGTTGGGGATCTGCCAGGCTGGAACCCCTGGCTCGCAAGCTTCTGCGGCGGCGGTTTTGAGGAATCTGGTGAAGT TCACCGAGATCAGGCAGAATTTCGCGGAGGAGAATGGGGTGGGTGTTCTGTTGGCGGTGGCTTCTTCTGGCACTGTGGTG GCTCAGGAGAATGCGATTGGGTGTTTGGCGAATTTGATCTCGGAGGATGAAGGCTTGAGGCTGACGGTGGTTAAGGAAGG TGGGGTGGGTTGTTTGAAGAATTTCTGGGATTCAGGTCCACCGGTTCAGAGTCTCGAGGTTGCGGTTGAGGCTTTGAGGC ACTTGGGTTCGAGTGCCCCCATTGCTGAGGTTCTTGTTGCGGAAGGGTTTGTGGGGAGGGTGATGGGGTTGCTGAGTTGT GATGTTCTCGCGGTGAGGATTGCGGCGGCTAGAGCTGTTCATGCTTTGGGGTTAAGCAGCGGGAAGACGAGGAAGGAAAT GGGAGAATGTGGGTGTGTTCCTGGTTTAATCAAAATGCTTGATGGGAAAGGTGTGGAAGAGAAAGAAGCTGCTGCAATGG CATTGTCGGTTCTGCTAATTCACCCGGGGAACAGAAGGGTGTTTCGTAAGGATGAAACAGGGATAGTGAGTGCGGTACAT CTCTTGAACCCGTCGTTGCAGAATCTGGATAAGAAGTACCCTGTTTCGCTGCTACTCTCGCTCGTGCACTCCAAGAGTTG CAGGAAGCAAATGGTTGCAGCGGGGGCTTGTGTACATATGCAGAAGCTTGTGGAAATGGATGTCCCCGGGTCCAAGAAAC TCTTGGAAAGCCTTGGTCGTGGTAAGATTTGGGGTGTTTTTGCTAGACCCTAG
Protein sequence (LotjaGi1g1v0334800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKESDPITDCVHLLTSLLDEEIPTVQNLKTKWSLVRVKLTNLQTHLTDFSAEFPSSSATNPLSLDLFHSLSATLHSAVSL AQQCHSPTHLPRGKLQTQSDLDSLLATLDRHLSHCDILLRSGLLLDAPATSKRDAVRSASRNLITRLQIGEPESRAAAMD SLLALLHQDDKNVTIAVAQGLVPVLIRLLDSSCPEMKEKTVAAISRVSTVDSGKNVLLAEGLLLLNHLLRILDSGSGFAI EKACIALQALSFTKDNARAIGCRGGISSLLGICQAGTPGSQASAAAVLRNLVKFTEIRQNFAEENGVGVLLAVASSGTVV AQENAIGCLANLISEDEGLRLTVVKEGGVGCLKNFWDSGPPVQSLEVAVEALRHLGSSAPIAEVLVAEGFVGRVMGLLSC DVLAVRIAAARAVHALGLSSGKTRKEMGECGCVPGLIKMLDGKGVEEKEAAAMALSVLLIHPGNRRVFRKDETGIVSAVH LLNPSLQNLDKKYPVSLLLSLVHSKSCRKQMVAAGACVHMQKLVEMDVPGSKKLLESLGRGKIWGVFARP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 548 | 541 | 1.4E-154 | – | |
| Gene3D | 140 | 358 | 219 | 9.4E-31 | ||
| SUPERFAMILY | 142 | 491 | 350 | 1.41E-45 | ||
| SMART | 169 | 209 | 41 | 0.037 | ||
| ProSiteProfiles | 180 | 222 | 43 | 8.907 | ||
| SMART | 253 | 293 | 41 | 41.0 | ||
| SMART | 294 | 334 | 41 | 43.0 | ||
| SMART | 336 | 377 | 42 | 490.0 | ||
| Gene3D | 359 | 535 | 177 | 7.5E-16 | ||
| SMART | 378 | 418 | 41 | 260.0 | ||
| SMART | 419 | 460 | 42 | 8.3 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0334800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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