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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0336100 |
| Transcript ID | LotjaGi1g1v0336100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SQT9|A0A151SQT9_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0336100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79558631..79560006) extracted from Lotus japonicus Gifu genome v1.2.
CTTATTTTTCCAAGGATTTTGAATTTCGATTAAACAGTGCTTTAAGAGCGGAAATAGCCTTTTTCGGACACTCTCGACCT TAGTCGGGTGTGGAAATGGCTCGTGCTAACTCTTATACTGACCACAGTACTATCCTCAAGCAATTTCCTGAACGTTATTC TTCATCAAGTCATCCAAAACAACATTCTCCTTTACAAGGTCCTTTTACGGTTAAACCGGTTCTACTCTTGGGTTGGAAAA ATAATTAAAAATAATTATTTAAATCCCTCTGAAATTTGGGTCTTACATACAGCGCGTGATGGGTATAGTTGGTTGCTGCT GCAGGATGTGTTGCCTCATCCTATGGTACCTTGGGTGTGGATCTGGAAGTTGGTGGTTCCAGAAAAAGTGAAGGATTTTG CGTGGCAGGGCTGTCGTGAGTCCCTTCCGGTGGCAGCTGTGCTTCATCATCGTGGGGTGCGTCTACCGCTGATTTGTAAG TGTTGTGGGAGTCATGTTGAGACGCAAATCCATTGTGTGCGGGATTGCGAGGGTGCGTTGCAGGTTTGGAGCTCTATGGG GTTGATGTTGCCAGACGTGTTGGCGGCCATGAATTTTGCTGGGTTGCTGGAGGTCATTCCTCGTGATCGAGCTTCAGAAG CCTTAATCCATTTGTGGTTCCTGTGGCGTCGGCGATGTGCTCGTGTGTTTGAGGATCAGAAGGAGTTGTGGCAGCTTGTG ATCCACCGTGCCCAAGGGATGATGGCGGTTTTGTGTGACTCCGGGGATGGGGGGCAGGGTGCTCGGACCGTGAGGCAGGT TTCTTGGGTTGCTCCTCCAGCGGGTTGGGTGGCGCTCAATGCAGATGGGAGTTCGAGTGGGAATCCAGGTCCGACGGGTT TTGGTGGTGTGATTCGTAACGATATTGGAGGGTGGTGTTGCGGGTTTTCTGGTTTCATTGGTGTCTCTGAGATCTTACAG GCCGAGCTGCTTGGCTTATTGCATGGGCTTGAGTTGTGTTGGGAGCGCGGCTTCCGTCGAGTTAGTGTGCGCTCTGATTC CTTGCAAGCGTTAGCGCTTTTGCAAGGTGACATGCCTATGTTCCACCGGTACGCCTCGATAATTGCTTCCATTCGACGAT GGCTGAGACGGGATTGGTTGGTGTCACTACAACATACTCTGCGTGAGGGAAATCAAGTGGTTGATTTCCTGGATAAGGCG GGTGTTTGTTCTGGTCAGAAGCTAGTGGTGCATGAGCTTCCTTTGGAGGGTCTTGGTGCTTTGCTGGGTGCTGATTATAT GGGTGTTGCTTTCTTGAGAGCTTAGTTTCTTGCTTTGTTATCTTTTTTTCTTTCTTTAAGCTGTCATCTACCAAAAAAGA AAAGACCACTACTAAT
CDS sequence (LotjaGi1g1v0336100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTACCTTGGGTGTGGATCTGGAAGTTGGTGGTTCCAGAAAAAGTGAAGGATTTTGCGTGGCAGGGCTGTCGTGAGTC CCTTCCGGTGGCAGCTGTGCTTCATCATCGTGGGGTGCGTCTACCGCTGATTTGTAAGTGTTGTGGGAGTCATGTTGAGA CGCAAATCCATTGTGTGCGGGATTGCGAGGGTGCGTTGCAGGTTTGGAGCTCTATGGGGTTGATGTTGCCAGACGTGTTG GCGGCCATGAATTTTGCTGGGTTGCTGGAGGTCATTCCTCGTGATCGAGCTTCAGAAGCCTTAATCCATTTGTGGTTCCT GTGGCGTCGGCGATGTGCTCGTGTGTTTGAGGATCAGAAGGAGTTGTGGCAGCTTGTGATCCACCGTGCCCAAGGGATGA TGGCGGTTTTGTGTGACTCCGGGGATGGGGGGCAGGGTGCTCGGACCGTGAGGCAGGTTTCTTGGGTTGCTCCTCCAGCG GGTTGGGTGGCGCTCAATGCAGATGGGAGTTCGAGTGGGAATCCAGGTCCGACGGGTTTTGGTGGTGTGATTCGTAACGA TATTGGAGGGTGGTGTTGCGGGTTTTCTGGTTTCATTGGTGTCTCTGAGATCTTACAGGCCGAGCTGCTTGGCTTATTGC ATGGGCTTGAGTTGTGTTGGGAGCGCGGCTTCCGTCGAGTTAGTGTGCGCTCTGATTCCTTGCAAGCGTTAGCGCTTTTG CAAGGTGACATGCCTATGTTCCACCGGTACGCCTCGATAATTGCTTCCATTCGACGATGGCTGAGACGGGATTGGTTGGT GTCACTACAACATACTCTGCGTGAGGGAAATCAAGTGGTTGATTTCCTGGATAAGGCGGGTGTTTGTTCTGGTCAGAAGC TAGTGGTGCATGAGCTTCCTTTGGAGGGTCTTGGTGCTTTGCTGGGTGCTGATTATATGGGTGTTGCTTTCTTGAGAGCT TAG
Protein sequence (LotjaGi1g1v0336100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPWVWIWKLVVPEKVKDFAWQGCRESLPVAAVLHHRGVRLPLICKCCGSHVETQIHCVRDCEGALQVWSSMGLMLPDVL AAMNFAGLLEVIPRDRASEALIHLWFLWRRRCARVFEDQKELWQLVIHRAQGMMAVLCDSGDGGQGARTVRQVSWVAPPA GWVALNADGSSSGNPGPTGFGGVIRNDIGGWCCGFSGFIGVSEILQAELLGLLHGLELCWERGFRRVSVRSDSLQALALL QGDMPMFHRYASIIASIRRWLRRDWLVSLQHTLREGNQVVDFLDKAGVCSGQKLVVHELPLEGLGALLGADYMGVAFLRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 317 | 314 | 1.4E-64 | – | |
| PANTHER | 4 | 317 | 314 | 1.4E-64 | – | |
| Pfam | 4 | 69 | 66 | 4.0E-12 | ||
| ProSiteProfiles | 159 | 289 | 131 | 13.074 | ||
| SUPERFAMILY | 162 | 288 | 127 | 2.15E-18 | ||
| Gene3D | 163 | 289 | 127 | 5.2E-19 | ||
| CDD | 165 | 285 | 121 | 5.63627E-28 | – | |
| Pfam | 166 | 283 | 118 | 2.1E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi1g1v0336100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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