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LotjaGi1g1v0337500.1

Overview

Field Value
Gene ID LotjaGi1g1v0337500
Transcript ID LotjaGi1g1v0337500.1
Lotus japonicus genome version Gifu v1.2
Description F-box family protein; TAIR: AT5G63520.1 F-box/LRR protein; Swiss-Prot: sp|Q9FMV0|FBL91_ARATH F-box/LRR-repeat protein At5g63520; TrEMBL-Plants: tr|A0A151TR18|A0A151TR18_CAJCA F-box/LRR-repeat protein family; Found in the gene: LotjaGi1g1v0337500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:79780044..79785164) extracted from Lotus japonicus Gifu genome v1.2.

TAAGCAAAAATAAGCCCAGCCCAATAATGTTTAACCGCTTTCTTCCTGAACCTGAAGCACTGAACTCTGATGAATTCTCA CGTCGGTGAAGCTTGAACCAAAAATGGAGGAGAATCCATCGCCATCATCATCATCACCACCACCATCGAAATCGATCACG AAGGGAAAAGCTTCAACCGATTCGATCATGGGCGTGGGTTTGCTCAACGACGACCTTCTCCAGAACATTCTCACCAGGCT TCCTGCCCTATCGTTCGCTTCAGCAGCTTGCGTTAGCAAAACATGGAACTCTGTCTCCAATCGCATCCTTTCTCGTCCCA AGCTCTCATCTGCGCTTTCTCTCAACCCTTCACTCACCGTAAGCAGTTTCATGCTTCAATTTTTGTCAATTTCACAAAGT TATGTTCATTTTGTGTGTGTGTGTGTTTATGTTCAATTATCTGATTAATAGATCATGCAACTTGTCTCTGCAGGATGCAG TGAACGAGGTTCTTCACAAGGTTCTAGCTGAGCCAATTCGACCTTATTTCGCAATTGTCAATGTTGGAAGTGGATTCGAA TCGTCAAAGATTCTGCGGCTTGTAAGGAATTTAGCATTTTTTTAGTGCAAGCAGTGTTTGTAATTTTGTATTATGCATTT GACTTGATGCCTGTGGTGCAGGTTAGAAAGAGATTGGGGTTTAATATTCCGGTTATTGTCTCGGTGACGAATGGTATTAT GGGAAGGGATGCTCTTACTGATGAATTTAAAGAGGTTGAAACTTGAAGGTTGGCATTTTGTTTCCTTTTGAGTTGGAGAT TTGCTAGACTCATGTAGATAATTTGTGCAGGTCAAGTGGGGTGCGCTTTTTAGTGGCATTGACAGTGAAGCATATGCAAG AAATCTGAATGAAGGCATAGTGTTGACCGTTGGATACTTGCCGGGATTAAAAGTTGAAGCTATACCATTGCGTCGACCGC CCAAGGTAATTAAATCTGTTCAAGAATTGGACTTTGTACTCTTAGAATATGAATGTGCAAGAGTAAGATACATTGAAAAT TATGATTGAATACCTGGACAACCCAAGGTAGATTCATGCAAAAGGTTCCCTTAGGCGGCCAAGTGGCTTTTATGATACCT TGAGGCAGGTGTCAGCTTACTGAAGAAAGGTGTTAGGAATAGATGAAAGAAGAAAAAAAGTATAATATGTGGATTATTAG CATTAGTTTTACATTTGAATTAACTTCTCAATTTACATAACAGAATAGTCCAAAGACTGGTATTAATTATTTAACATTAT GGATATTTTACCCTCTTAGCATCACATCAGCGAGTTAGGATCTCAGTATTTTGGGAATTCTATAATTGTAAATAAGATGC TAAAGCCATGCCTAGTAAGAACCTTAATGGTCTAAGACACCAGAGATTTGTGCTTCAACTAGCCAGGGTTAGTAAAATCT TCGGTTTTCTCGTAGGATTGGCTTCTCATAGTGATTCCTGACCCTTTCCACACAAAAGATCACTTGTTCAGATAAAGTGA GATTGTAGGGTAATATCATGATTCATGAAATTGGTGGAATCGCCAATCTTCATGAGTAGTGCAACCTGTGACTCAGACAG GTTGAGCTGGGCAAACCTGGGAACCACACCTCTGTTTTTCATTTCATTTGGTTTGATGTGACATTGAGTTTGACTTCTTT GGTTTTGATAGCTGTGGAATGGGGGGAGCGTTGATGCAGTTCTTATGGAGTCTGGGAGAGGGTCACGATTGGCCACGATG AGGAGTGTGTTCTGGTCTGGGTCACTGGGTGGACCCTATAATGCCGTTCTTGGGGTTTGATGGGCTTTGCATAGATTCTG AAATTTGTTTTTATGCTATTTTCATATTTTGTATCTTCTGGTTGCAAGAGAAGGGTTATCAGGTACTTTCTAGTTAGAAG TCTAAAAATTTGAGTGCTAGATAATGGGTCTGCATGTGAATGGACTATGGAGATTAATATATCATAAGGGTGTAGTGAAT GAATGGAAGTGAAACCATGCTTTGTGCTTTTATAGTTATCATTATCAAAGTTATTAATTAAAAATATCTTGACAGCAGAC ACCTCAAGAACCACGGATTGACAATTTTGTGATGGATATCAAGGAATATTCGGCCTCTGTCTCCAGTTGCAAATTCCCTG TTGGGATTATACTGTTTGGAGTAAGTTAATGGTTGTGCACTTATTTACAAATAAATTACTACGTTCCGTTGTCATTCTTG GTTCCGTTTTTAACACTTCGATTTGGCTCTACAGGAATCAAGCAGTGACATGAAACTGGTTCTGGAGAAGTTGGGTGAGT GGTACTTTGTATACATATATTTTGTTATGCCAATTGTTATTGTGATAAAAGAGTGCTGCTTACAGTTCATAGATGTGATG CTATATTTAGTTGAAAGATATTTGTGACAAAATGTCTGGGATACATAATGGCAATTTGATACTTGAATTTAGAGGAGGTG ACTTTGTATGTTGTGTTAGTTCTGTAATTGAGAATATGACTTCAACTTACACCCTTCTGCCGCAGGCCTGTGCTTGGTTT CTTTTTATTTTATTTTAATAATGTCTTGTTTTATTTCAGACTATGCCATGCCGATGGACACAATCATTGTGGGTGATGAG CGAGGCTCCTTTGTATACTGCAGTGGAAATGATTCTAGGAGTATTCGTGGTAGAACAAGGGACACAGAAGCTGTTGCTCT TGTATTTGCTCAAGACAGAGACAGGTCTTCTGGTACTTCTCATTCTTGATATCTTTTTGGTAGCTCTTGGCACCTGATGC ACAATATAATTCATGAAATTGTTACAGTGCATGCAATCCCATTTCATTAATGAAGAATGTAAAATTTCGTATTCCTCTAA GGATGTTTGGGTTGAAAACTTCTGTAACTTTAGTCATTAGAATATATATTTTATGCTGGAGAAATTTGGGTAGCTAATCA AACATGTGTTAAGAACAAAGAAGTGGGAATTCCTCTCAGGTTTGAATAGGCATGTCTGGAAATGTCATTCTCCTTGTTTT TTCAGATGAGATGAGGACAGAGGCTGATTATGGAAGTTTTTTCATTCCTTGTTTTCTGTAAGCACTACTATTTGATTCTG TTATTGCTCCTTTTTTGGGGAAAGTTAGGAAACTCATGTTGGGATCTAAGTGGGTGACTGAGGGAAATGAGTTTTTTTTT TTGGGGGGGGGGGGGATTGAGCCCCTTGGCAAGTTAGGAAATTCCTGCTGGGATCTATCGTGTATGTGATTTTTTACTGC CACAATTGTTTCTGGGGTTGCAAAGTTATTTTATTTTATTTTTTGCAACTCTCTATAAGTTGCTCATCTTTGTTACGGAT TGATTTTGCTGCAGGAAGTATTAGATTCCATATTGCATTCTCAAACGGGGTTTCAACTGTGGGTGCTAGATACAAGGCAG TTTCAGTTAAAACAAACTTTGATGATTGTTCTACCTGGCTAACTGCTAGGAGGGAAGGGCAGCAGGAACTTCTTGATGGT CAGAGTATTCTACTTGAGATTAACGATTCGGTGCGTGATTCTAAAACATTAAGAAGGACCATTAAATAGACTCCAAAATT AATTTTTTAAATCATTAAAAAGGAATACTTAATCTTAAGAGATATAGAACATGTAAACTTAGGAAGAAGGAACATACCCT CTTGGGTGTTAAATATTTTATATTCTTGTTAACTTTGAAGCTGATGATAATATAGACTTCCGCTATCTGTAGTTTTCTTT GATTGTAAGGTTTCACATCAATTCGAAGTTTTGTAGTACTAATTCGATGAAATTTGTGCTAGTGGTTTTTATCTTTCATC TTCTTTTGTTTCTATCTATACTATTTTCCCCTTAACTTCCAAAAACGTGGCAGCTAGAGAATCAGATCGAGTCTCCAGAG TTGTACATTGGGGTAATTAAACATAGGAAATTCTCCATTGGAGCAGAGAAGCCAATGCCAAGAACGTCTATTGCATATCA TGGAGTTGTAGGGTATGATATAGACTCTTCCCTTTGTAGATTGTAGGTCTTTTAGTACCTCTCATTAATATTAATTCTTC TCTGGAGTCCTCTCATGAATTTTTCCTTTTTTTTTTATAGAAAAAAGGCTGATTTCCTAAGTTTTCATGTTTTGAACAGA GGTGATGAAGAGTATCTATATGTTGATGGAATTGGCATCAAAACAGGAGATATCTTTCAGTTCTACCATTCAGATCCTAA AGCAGCGTTAGGTTCATTAACAGAGGTCCATGATGCCCTCAACAATATTAAGCTGGAAAAAAATTCTAGGAGGTTCATGT GTGATGGAGACAATGGTGTTAATGTTTTCGGGGGCCTTATTTTTGCTTGCTATGGCCGTGGTGAGTCATTCTTTGGACAT CACAATATTGATAGCTCCCCATTCTTGGAGAATTTCCCAGGAGTGCCACTGGGAGGCATATTTTGTGGTGGAGAAATGGT TCGTCCTTGCACCACTTTGATTGGTCAGCATCAAGGAGCAAGCCCCATTAGTTGCTGTCTACATGTTTACAGCACTGTAT ATTTAGTGATGACATATGCTCCCTCCTCTGTGGAACAATAGATGCTGCTCATGTTTATTCTCATGATGTACATTGCTAGT TTAAGAGGATGCTCTGTGCTGCGGTCTTGGATTCGACTATCTTATGGTGTATCAGATAATAATTATTTTGTTACATGGAT ATGGAGTTTATGCAGGGTAGTTTGTTTTAACTATCACAATATCATTATGAAACTGACTTTCAAGTTTCAAGTCTTTCGTA ATCTTTTTACGGGTTTGTGAGGTGGGTAAGATAATGATGATTAGATAGGACAACCATCAACAAGATTTAATAATAATGTA AAAACGTTGATAAGTATAATTTAGATTGATATGAACCATTGGATCACAACTCACCATTCTGATTCTCTGCAGTTATTTCC ATAGTAGTGCATTTGGATTTCTATTAGACTTAATGTTCTGATTCACGTTGATAAGTATGTTTGAGGCCAATTGCCTCAAC ATATTAAAATCGTGCTGCTTTAATTTATAAAAACTCTGATAAATTCTAGCTTCTCCCTCCAATTTCCTAGTCGGTGTTCC A
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0337500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGAGAATCCATCGCCATCATCATCATCACCACCACCATCGAAATCGATCACGAAGGGAAAAGCTTCAACCGATTC GATCATGGGCGTGGGTTTGCTCAACGACGACCTTCTCCAGAACATTCTCACCAGGCTTCCTGCCCTATCGTTCGCTTCAG CAGCTTGCGTTAGCAAAACATGGAACTCTGTCTCCAATCGCATCCTTTCTCGTCCCAAGCTCTCATCTGCGCTTTCTCTC AACCCTTCACTCACCGATGCAGTGAACGAGGTTCTTCACAAGGTTCTAGCTGAGCCAATTCGACCTTATTTCGCAATTGT CAATGTTGGAAGTGGATTCGAATCGTCAAAGATTCTGCGGCTTGTTAGAAAGAGATTGGGGTTTAATATTCCGGTTATTG TCTCGGTGACGAATGGTATTATGGGAAGGGATGCTCTTACTGATGAATTTAAAGAGGTCAAGTGGGGTGCGCTTTTTAGT GGCATTGACAGTGAAGCATATGCAAGAAATCTGAATGAAGGCATAGTGTTGACCGTTGGATACTTGCCGGGATTAAAAGT TGAAGCTATACCATTGCGTCGACCGCCCAAGACACCTCAAGAACCACGGATTGACAATTTTGTGATGGATATCAAGGAAT ATTCGGCCTCTGTCTCCAGTTGCAAATTCCCTGTTGGGATTATACTGTTTGGAGAATCAAGCAGTGACATGAAACTGGTT CTGGAGAAGTTGGACTATGCCATGCCGATGGACACAATCATTGTGGGTGATGAGCGAGGCTCCTTTGTATACTGCAGTGG AAATGATTCTAGGAGTATTCGTGGTAGAACAAGGGACACAGAAGCTGTTGCTCTTGTATTTGCTCAAGACAGAGACAGGT CTTCTGGAAGTATTAGATTCCATATTGCATTCTCAAACGGGGTTTCAACTGTGGGTGCTAGATACAAGGCAGTTTCAGTT AAAACAAACTTTGATGATTGTTCTACCTGGCTAACTGCTAGGAGGGAAGGGCAGCAGGAACTTCTTGATGGTCAGAGTAT TCTACTTGAGATTAACGATTCGCTAGAGAATCAGATCGAGTCTCCAGAGTTGTACATTGGGGTAATTAAACATAGGAAAT TCTCCATTGGAGCAGAGAAGCCAATGCCAAGAACGTCTATTGCATATCATGGAGTTGTAGGAGGTGATGAAGAGTATCTA TATGTTGATGGAATTGGCATCAAAACAGGAGATATCTTTCAGTTCTACCATTCAGATCCTAAAGCAGCGTTAGGTTCATT AACAGAGGTCCATGATGCCCTCAACAATATTAAGCTGGAAAAAAATTCTAGGAGGTTCATGTGTGATGGAGACAATGGTG TTAATGTTTTCGGGGGCCTTATTTTTGCTTGCTATGGCCGTGGTGAGTCATTCTTTGGACATCACAATATTGATAGCTCC CCATTCTTGGAGAATTTCCCAGGAGTGCCACTGGGAGGCATATTTTGTGGTGGAGAAATGGTTCGTCCTTGCACCACTTT GATTGGTCAGCATCAAGGAGCAAGCCCCATTAGTTGCTGTCTACATGTTTACAGCACTGTATATTTAGTGATGACATATG CTCCCTCCTCTGTGGAACAATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0337500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEENPSPSSSSPPPSKSITKGKASTDSIMGVGLLNDDLLQNILTRLPALSFASAACVSKTWNSVSNRILSRPKLSSALSL NPSLTDAVNEVLHKVLAEPIRPYFAIVNVGSGFESSKILRLVRKRLGFNIPVIVSVTNGIMGRDALTDEFKEVKWGALFS GIDSEAYARNLNEGIVLTVGYLPGLKVEAIPLRRPPKTPQEPRIDNFVMDIKEYSASVSSCKFPVGIILFGESSSDMKLV LEKLDYAMPMDTIIVGDERGSFVYCSGNDSRSIRGRTRDTEAVALVFAQDRDRSSGSIRFHIAFSNGVSTVGARYKAVSV KTNFDDCSTWLTARREGQQELLDGQSILLEINDSLENQIESPELYIGVIKHRKFSIGAEKPMPRTSIAYHGVVGGDEEYL YVDGIGIKTGDIFQFYHSDPKAALGSLTEVHDALNNIKLEKNSRRFMCDGDNGVNVFGGLIFACYGRGESFFGHHNIDSS PFLENFPGVPLGGIFCGGEMVRPCTTLIGQHQGASPISCCLHVYSTVYLVMTYAPSSVEQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 - –
SUPERFAMILY
SSF81383
31 66 36 1.22E-8
IPR036047
PANTHER
PTHR14939
32 536 505 5.9E-177 –
PANTHER
PTHR14939:SF8
32 536 505 5.9E-177 –
SMART
SM00256
34 74 41 2.4E-4
IPR001810
Pfam
PF00646
34 73 40 1.7E-6
IPR001810
SMART
SM01204
347 503 157 0.0015
IPR019494
Pfam
PF10442
406 501 96 7.9E-8
IPR019494

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0337500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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