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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0338900 |
| Transcript ID | LotjaGi1g1v0338900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYND type zinc finger protein; TAIR: AT5G50450.1 HCP-like superfamily protein with MYND-type zinc finger; Swiss-Prot: sp|Q9FK27|FB342_ARATH F-box protein At5g50450; TrEMBL-Plants: tr|A0A0R0JI11|A0A0R0JI11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0338900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79962620..79965732) extracted from Lotus japonicus Gifu genome v1.2.
AGAGAATCCCACGTTACGACATACAAATCACCACCCCTCTGTCCCCTATTAATATTATCATCATCCCTAATCATCAACAT TATACACTCCATTATCACAAATTATTCGTATTATACCCAAGACGAATAGCTCAGTTGAGTGTGTGGAAAGAACTCTCGAG CTTAATCCTCATACAATAAATACACTTTGGGAATAGATGAAGAGCCTTAAATTGACTGAATCCTAAATCTGACGACATCT AAAGGGTGACCGAGTACCGGATGTTTATACTAAAAAAAAATTATTAGTATTACTTTTTCTTACAATTTTAATTTTTTCTA GAAAACCGACCCTTGTGATACGTGGGCCCCTGCCCCTAGCTTTTGCAGTGAAGCTGGTCTTCAAATATAAAACCAACCCC TCTTTTCTTTCCCCTTCGTTTCGCCGTTACACACAAACAGAGGCAGACTCATTCATAATTCACAGCACTGTAACTGCAAC TGCATCGTCATCTTCACGCGCCACCACCATCCTCCATTACCGACACCTCAAAGCTTCGTTGAATGCAAGAACATGAGAAG GCCATTGAAACAACAACCCAACAAGAAGCTCAAGCACAACCTCTTCGACGACCTCCCCGACGATCTCGTCGTCTTCATTC TCTCCAAGCTCTCCGCCACCGCTTCTTCTCCCTCCGATTTCATCAGCATCCTCTCCACGTAAGCCACTCTCACTCTCTTC CCCTTTCCTTCCCCCATTGATTTCTTCTCTGATGATTTCTTAATTGCAAAAAACAGATGCAAGAGACTCAACCAGTTAGG CCTCCACCGCCTGGTGTTATCCAAAGCCGGACCCAAAGTCTTCGCCGTCAACCCCAGAAACTGGTCGGAAAGCCCTCACC GCTTTCTCAAACACTGTGCCAACGCCGGTAACGTCGACGCCTGTTACACTCTCGGAATGGTTAGTATCTGTCCCCGTCAC CGTCGCCACCGTAACCGTTCAAGTTCAATGACGATTGAAATTGTATTGATTTGATTTTTGTTGTTGCAGATCCGATTTTA CTGTCTGCAGAATCGGAGGAGCGGGCTCTCGTTAATGGCGAAGGCGGCGATGAAGCTGCACGCGCCGGCGTTGTACTCGC TGGCGGTGATTCAGTTTAATGGAAGTGGAGCCTCTAAGCGGGAGAAGGATCTACGCGCCGGCGTGGCGCTGTCGGCGCGG GCGTCGTTGCTAGGTCACGTCGACGCGCTCCGGGAGCTTGGGCATTGTCTCCAGGACGGTTACGGCGTGAAGATGAACGT TGCGGAGGGGCGGCGTTTGCTCGTGCAGGCGAACCTGCGGGAGCTTGCGTTGGTTTTACGCGCCGTGACGAGGGCGCCGT TGATGAGTGACTACGGCGTGGCGGTGCCGGAGGTGCATCCGGCGAATTGGTTTCTCAGGGAGTGGTTTGCGTCGGGGCGG GGAGAGCTAGGTGAGGGGCTGAGGATGTGCGGTCACATTGGGTGTGGCCGGCCGGAGACGCGGCCGCATGAGTTCCGGCG GTGCTCGGTTTGCGGGAAGGTGAATTACTGCTCGCGGGGGTGTCAGGCGCTGGATTGGAAGTTGCGGCACAAGATGGAGT GTGCGCCGGTGGAAGAGTGGGTTGAGGACGGTGGCGGTGACGGTGGTGCGGGCGTGGAAAATGAGGTAGTTGTGCAAAAC GATGTCGTTTGAGGTGCGAGGTTGGAAAAAAAGAAAAAAGGAAAATAGAGAGAATAAAGAAAAGGTAAAGGGCTTGAATT GGAGAACTTGATGAACGTTTTGATTCTGTGTACAGCTAGGGAATTTTATTTTATTTTTTTATCTTTGAGAAAATCCTTGA AAATTATTACTGTTAGCTAGATGCCTAGCGAAGATCACAAAGTTCTTTATTCAAATCTGTTTTTCTTGTTTTTTTATTCC CCTAAGATATCAGTCGGTCAGTAGTCATGAGACTAATTCCTCGAGTTAAAATTAATCCCTCGAGTATGTGATCACATTAA GTGGATAGTATCCGCACGAGATTTGTTTTTTCTTGTTAATAGTTATTATGGCATGTGTTTTGGATGGGTAAAAGATTAAG AAACAAGTGGAGGAGAATATGGTGAAAATGAAAATAAGAACAAAATTATGTGGGGTTTATCCATGATATTTTTTTTCCTT TTATATTCCTCCAACTCAAAACATTGTCGAGTCGTTCAAATAGTTTCTTTCCCTTTTTAAAATGTAATAATGTCCTCACC GTAAAGTTCCCATCACGTGCATACAAGTTTGGAGTTGTATTCAATTTTTGAAAAATTACATTAATAAAAAATTAGGATAG TAGTTTATGGTCTATGAATCTTTCCTCCAATTTTTAGTGGGTGGTATCCGTAATTTAAGGTTGAAATCCATTTTTCTTAA TTAACGTTTATGATTTTTTAAAAGGATATAATAAGATTTGGGGTATTAAATATTCATTTTTTTTGTCATAAGTTGAAAGT TTTAGTAATAGTTGGTTTTTTTATTGTTGAATAAGCCTAGTGAAACATGTATTCAATAGCCATACTTATGAAAGAATTGG ACGCAAGCAATATTTTAAATTTTAGTATGATCAATTATGAAGGGGATGACTGAAAAAATAGCATTCGAGAAGGGGAGGAA GAGAAAGAAAAGAAGGGTAAGGGAAAAGGATGGTAGAGAGGAATGACATAAAGTAGCAAATCCAAAAGCTTACTGGCGCT TCTGACTTTTTGCTCAGTATCTAGGAAGTGGATAGTGAGTACATCCATTAGCCATTTTTTGTTGAAGTAGCGCTATCAAA AGAAAAATCTATGTCTAGTTCAAGTGAGAGTTTCCTAAGAATCTATCTATATATATTAGAAAAGAACAACTTCTAGCATG ACGTGTCGCTCTCACAGGCCAAGTTAGTGACGTGTCGCTCCCAGATTAATTCTCACATAATATTTTACATGTAAGCTCTT TCTCCTTGGCTCCACTTGCCACACGTGCCCTGATTTTTACTTACCTTATTTCTCCTTAATAAAAAAATACATTTTTAAAT TTTAGATTTGATTAGGATTTAGGTTTTTTATTTCCTGATTTTATCTTAATTTATTTTTAGAGTATTAATTAAT
CDS sequence (LotjaGi1g1v0338900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGGCCATTGAAACAACAACCCAACAAGAAGCTCAAGCACAACCTCTTCGACGACCTCCCCGACGATCTCGTCGT CTTCATTCTCTCCAAGCTCTCCGCCACCGCTTCTTCTCCCTCCGATTTCATCAGCATCCTCTCCACATGCAAGAGACTCA ACCAGTTAGGCCTCCACCGCCTGGTGTTATCCAAAGCCGGACCCAAAGTCTTCGCCGTCAACCCCAGAAACTGGTCGGAA AGCCCTCACCGCTTTCTCAAACACTGTGCCAACGCCGGTAACGTCGACGCCTGTTACACTCTCGGAATGATCCGATTTTA CTGTCTGCAGAATCGGAGGAGCGGGCTCTCGTTAATGGCGAAGGCGGCGATGAAGCTGCACGCGCCGGCGTTGTACTCGC TGGCGGTGATTCAGTTTAATGGAAGTGGAGCCTCTAAGCGGGAGAAGGATCTACGCGCCGGCGTGGCGCTGTCGGCGCGG GCGTCGTTGCTAGGTCACGTCGACGCGCTCCGGGAGCTTGGGCATTGTCTCCAGGACGGTTACGGCGTGAAGATGAACGT TGCGGAGGGGCGGCGTTTGCTCGTGCAGGCGAACCTGCGGGAGCTTGCGTTGGTTTTACGCGCCGTGACGAGGGCGCCGT TGATGAGTGACTACGGCGTGGCGGTGCCGGAGGTGCATCCGGCGAATTGGTTTCTCAGGGAGTGGTTTGCGTCGGGGCGG GGAGAGCTAGGTGAGGGGCTGAGGATGTGCGGTCACATTGGGTGTGGCCGGCCGGAGACGCGGCCGCATGAGTTCCGGCG GTGCTCGGTTTGCGGGAAGGTGAATTACTGCTCGCGGGGGTGTCAGGCGCTGGATTGGAAGTTGCGGCACAAGATGGAGT GTGCGCCGGTGGAAGAGTGGGTTGAGGACGGTGGCGGTGACGGTGGTGCGGGCGTGGAAAATGAGGTAGTTGTGCAAAAC GATGTCGTTTGA
Protein sequence (LotjaGi1g1v0338900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRPLKQQPNKKLKHNLFDDLPDDLVVFILSKLSATASSPSDFISILSTCKRLNQLGLHRLVLSKAGPKVFAVNPRNWSE SPHRFLKHCANAGNVDACYTLGMIRFYCLQNRRSGLSLMAKAAMKLHAPALYSLAVIQFNGSGASKREKDLRAGVALSAR ASLLGHVDALRELGHCLQDGYGVKMNVAEGRRLLVQANLRELALVLRAVTRAPLMSDYGVAVPEVHPANWFLREWFASGR GELGEGLRMCGHIGCGRPETRPHEFRRCSVCGKVNYCSRGCQALDWKLRHKMECAPVEEWVEDGGGDGGAGVENEVVVQN DVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 311 | 307 | 5.2E-168 | – | |
| PANTHER | 5 | 311 | 307 | 5.2E-168 | – | |
| SUPERFAMILY | 5 | 74 | 70 | 3.05E-6 | ||
| Gene3D | 74 | 211 | 138 | 2.1E-16 | ||
| SUPERFAMILY | 84 | 197 | 114 | 4.84E-11 | – | |
| Gene3D | 245 | 296 | 52 | 1.2E-10 | – | |
| SUPERFAMILY | 249 | 299 | 51 | 2.27E-10 | – | |
| ProSiteProfiles | 252 | 294 | 43 | 11.024 | ||
| Pfam | 255 | 294 | 40 | 3.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0338900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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