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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0340600 |
| Transcript ID | LotjaGi1g1v0340600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein, putative; TAIR: AT4G09040.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic; TrEMBL-Plants: tr|I3SSW7|I3SSW7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0340600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80246865..80249505) extracted from Lotus japonicus Gifu genome v1.2.
AAAACAGTCAAGACACCAATGTCCCTTATCCATTTCACTTCCCCTTCCAAAACCTCTCCAGAATGAGAATGGAGTAACCC AACTCAACCCAACCTCGTGGTTTCTCTGATTGAATGCAATGGCGCTGCTACGTGTTCTGTGTTTAACTTCTTCAACAACA ACAACTCACATATCCACACAAAACCATTCACCCTCTTTCTCATCCCTTGAGATTCACCACAAGAAGAACAACAACAAACC TTACTCCCAATCTTCATCTCACAACCACTCCACCAAGCTCACTTTTTGCCACATACCCTTTTCGTTTCGCCTTCCATGTC TATCAATCACGCACAGTACCAGAGCCAACACTCTCACATTCGCTTCTTCCACTACCCAACAACAACAAACCGAGGAAGCC ACCACTGAAGAATTTTCTACAACCAGGTTGGTTGCTCAGAACGTGCCATGGACAAGTACCCCTGAAGATGTTCGGTCTTT GTTTGAGAGATATGGAACGGTTCTCGAAGTTGAGGTTTTTGTTTCTTCCTCTTCTTCTTTTTTGTTCTGAAAGTTTGAGG TTTTTGTTTTATGTCTGATAAGGGTTTGTGTTTGTTTTGGTGCTTTAGCTTTCTATGTATAACAAGACCAGAAGTAGGGG TTTGGCGTTTGTTGAAATGAGCTCCCCAGAAGAGGCTCTTGAGGCTCTCAACAAGCTCGAATCGTATGTAAGCCTAAAAC ACCACTTACACTCTTTTTATCTTTGTTTGGTGCATGTTTGGATAAGCATTTGATTTTGGATGCAATTGATTTTGTTAAAA GTGAGTTGAAATGAGTTGAAAGTGAACTGAGTTATGAAAAAAAGTTGTTTTTATTGGGTAATGTTGTGAAATTCAGAATT TCATAATTGATATTTGATAATGTTTAACATAGGACCTAATCTCTTTAGCTTCAACACAGAATTGATTTTGAGACTGAAAT CAATATCAATTCTTCGAGATCACTCCCCAACATCTTTGTGCGTGTTCGGATGAGCATTTGTCACAATTGATTTTGGTAAA ATTGATAATTGTATAAGTGAGTTGAAAGTGAAGTGGTTTATGTTTGCATACATTTATGAAAAAATGATTTTTGTTGGGTA TGGTGAAACTCAGTTGTAAAATCTTGTAGTTGATTATGTTTAACGCATAAGCTACTCTCTAGGTTCTACTAAAAATTGAT TTCGGGTTTGAAATCAATTGTCCAAAATGACTCCCAAATATCAATAATTTCATCCAGAATTAATTTTACTCCAAAAGTGA TTTTACTCAATGAGAATTTATTCTAAAGCTCTCCAACGAGGAACTAGTGTGTTTTGGAATTTCATGATTGTGGAGAATTG ATTTTTGCAGATGCTACTAGAAGTAGCTTTAATCAGTTTCTGAGGGGAGGAAGTGATTCTTAGAGGATTAAAAGTGAATC CGGCCATCCTATTATCATTTGGTTTGATAAAGTTTTCACCAACTCCTGAATTCTGTATTCTTTTTACACTGAAAATTTTA CTCTCATTTAGGGGATGATGCAAATTTGTGTCATTTTGATTTTGCTGTGCCTTTGGTTATTGAATTCACTCTGGCATCTG GTTTTGCTGAGTTTTTTAATGCATTGAGTACACCTTAAGAAGGGAGGGACCTTGGTTTGATGTGTTTTTCCTTTTCTTTT TCTTTGAATGCTGAGTAGGAGTTTGAGGGTCGCGTATTAAAACTCAACTATGCTCGACCAAAAAAGAAGAAAGCGCCGCC ACCCGTAGTGCAACGGAAGCCAGTAACATTTAACTTGTTTGTTGCAAACTTGTCCTATGAAGCGACGTCTAAAGATCTCA GGGAGTTTTTTGACTCAGGAAGTAGTCAAGTTGTTTCTGCAGAGGTTGTATTTCATGAGGACCCTAGAAAATCAACTGGT TATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCCAATGCAGCTCTTTCTGAGTTCCAAGAAAAGGTAACTTGGGGTTT CTTGCATTAGTTTGTCTTGATTTTGCTCAGCTATTTTTTTAGCGTTTCAATTTGGGACACTATTTTTAGTTGGAGTGATG TGGAACTATGGTTCTTGTGCAGACTTTTATGGGAAGGTCACTCAGGGTAGCGCCTAGTAAGCGATTTGTTCAACCACTTG AAGAGAGCAGTGCAAAACCTGAAGATACATCTACTGAGTTGAGCGTGAATGGGGCAGGAGTTGACAATGCTGATTGATAT CATTATTTCCCTGCTGCATTTCAAATATTCTTGATGCTGTATGCCATTACATCGAAAGTTTTGATAGTGTGCTCATTCTA CTGATTATGCAGAAGTCTTTGATTGGTTTAAACTGTGTTTACAGGTAGTTTGCACCTTTTCGAACCAAAGGCTCAACAGA TACAAGAAATGAATAGATATGTTAGTATAAGCATTTCTGTGATTGTAGAAATGGATAGTCTTTGTAAGTGAATGGTCACA TTTCTATGGAATCAAGGTATTTTCATTTCATTGTTTGAAGTTAGAAGGCTACTATATCTCTAGAAAGCAAGAAACATATC TGTAATAGTGATTTTGTTTGCATCTTTAGTGCTGGTTACATCACATTGACATATTGATACAGCCTATCGAATGATTTCTT C
CDS sequence (LotjaGi1g1v0340600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCTGCTACGTGTTCTGTGTTTAACTTCTTCAACAACAACAACTCACATATCCACACAAAACCATTCACCCTCTTT CTCATCCCTTGAGATTCACCACAAGAAGAACAACAACAAACCTTACTCCCAATCTTCATCTCACAACCACTCCACCAAGC TCACTTTTTGCCACATACCCTTTTCGTTTCGCCTTCCATGTCTATCAATCACGCACAGTACCAGAGCCAACACTCTCACA TTCGCTTCTTCCACTACCCAACAACAACAAACCGAGGAAGCCACCACTGAAGAATTTTCTACAACCAGGTTGGTTGCTCA GAACGTGCCATGGACAAGTACCCCTGAAGATGTTCGGTCTTTGTTTGAGAGATATGGAACGGTTCTCGAAGTTGAGCTTT CTATGTATAACAAGACCAGAAGTAGGGGTTTGGCGTTTGTTGAAATGAGCTCCCCAGAAGAGGCTCTTGAGGCTCTCAAC AAGCTCGAATCGTATGAGTTTGAGGGTCGCGTATTAAAACTCAACTATGCTCGACCAAAAAAGAAGAAAGCGCCGCCACC CGTAGTGCAACGGAAGCCAGTAACATTTAACTTGTTTGTTGCAAACTTGTCCTATGAAGCGACGTCTAAAGATCTCAGGG AGTTTTTTGACTCAGGAAGTAGTCAAGTTGTTTCTGCAGAGGTTGTATTTCATGAGGACCCTAGAAAATCAACTGGTTAT GGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCCAATGCAGCTCTTTCTGAGTTCCAAGAAAAGACTTTTATGGGAAGGTC ACTCAGGGTAGCGCCTAGTAAGCGATTTGTTCAACCACTTGAAGAGAGCAGTGCAAAACCTGAAGATACATCTACTGAGT TGAGCGTGAATGGGGCAGGAGTTGACAATGCTGATTGA
Protein sequence (LotjaGi1g1v0340600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLRVLCLTSSTTTTHISTQNHSPSFSSLEIHHKKNNNKPYSQSSSHNHSTKLTFCHIPFSFRLPCLSITHSTRANTLT FASSTTQQQQTEEATTEEFSTTRLVAQNVPWTSTPEDVRSLFERYGTVLEVELSMYNKTRSRGLAFVEMSSPEEALEALN KLESYEFEGRVLKLNYARPKKKKAPPPVVQRKPVTFNLFVANLSYEATSKDLREFFDSGSSQVVSAEVVFHEDPRKSTGY GFVSFKSKKEANAALSEFQEKTFMGRSLRVAPSKRFVQPLEESSAKPEDTSTELSVNGAGVDNAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 10 | 9 | - | – | |
| Phobius | 11 | 15 | 5 | - | – | |
| PANTHER | 16 | 297 | 282 | 3.9E-89 | – | |
| PANTHER | 16 | 297 | 282 | 3.9E-89 | – | |
| Phobius | 16 | 305 | 290 | - | – | |
| Gene3D | 19 | 183 | 165 | 6.4E-23 | ||
| SUPERFAMILY | 88 | 187 | 100 | 1.61E-22 | ||
| ProSiteProfiles | 102 | 179 | 78 | 17.285 | ||
| SMART | 103 | 175 | 73 | 3.3E-17 | ||
| Pfam | 107 | 173 | 67 | 1.5E-13 | ||
| Gene3D | 184 | 279 | 96 | 1.5E-20 | ||
| SUPERFAMILY | 186 | 277 | 92 | 2.55E-20 | ||
| ProSiteProfiles | 196 | 275 | 80 | 16.483 | ||
| SMART | 197 | 271 | 75 | 2.1E-19 | ||
| Pfam | 198 | 269 | 72 | 3.2E-15 | ||
| MobiDBLite | 275 | 305 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0340600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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