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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0340900 |
| Transcript ID | LotjaGi1g1v0340900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G72210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9C7T4|BH096_ARATH Transcription factor bHLH96; TrEMBL-Plants: tr|A0A0B2R0A5|A0A0B2R0A5_GLYSO Transcription factor bHLH96; Found in the gene: LotjaGi1g1v0340900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80268602..80270752) extracted from Lotus japonicus Gifu genome v1.2.
AAAGTGCCAAGAGAATCTGTCTGTCTCTGTGCATGGTGTGTGCGTTTCCCTGTGCTGAGTTTGTTCAGTCAAGAAAATGG TCTACAATGAACCCTCACGTGCAGTATAGCCTGTAGCTAAATTTTTCTTTACCCATTCAATAGTCTTGTTTAAAGCCATG GAGCTTTCTTCGAATATGGCAATAATAAAAGGGCCACTTTGTTTGGTCTTTTGGGAATATAGCTACATGCCATTGTCAAG TTGATTTTTTTCTCTTAATTTGTCCAAACTGTTCCCTCCTTCTAATAGTTACCCTTCATATCATCCCTTTCCTTTATAGC TACCTTTTTCCCACTCACCCTTTCTCTCTCACAACCTCTTCACCAAAAAGTCTAGTGTCTGTGTCTGTCTCCTCTTTTAA AAATGGCATTTGAGGCTGTGGTTTTCCCACAAGATCCTGCATTCACATATGGTTGCAAAAATGATTACTTTTTCTCTGCA ACAACTGCTGTTGGAGCATGGGGCACCAACAACAACAACTATGGTCTCCTCCAAGCAGCAGAAGAAGAAGAAGAAAAAAA ACTCCTTGAAATCATCATCAACAACAACAACATGGACCAGGAGCAGAATCTCCATTCAAATAATTGGGATTCTTCTTCCC ACACATCCCCTGAAGCCTGCACCTTTGATCAATCATCTCCTACACCATTTTCTTCTTCTCGGCGAAAACGACGTCGCACC AAGAGCGCCAAGAACATGGAAGAAATCGAGAATCAGAGGATGACCCACATCGCGGTTGAACGAAACCGCCGCAAACAGAT GAACGAGTACCTTTCTGCGCTAAGATCTTTGATGCCTTCTTCTTATGTTCAAAGGGTTAGTTAATGATAATTACTTTAAC TCAATCTTTCTTAAATTAGAAATTAACACAAAAGTAGATCATGACTGTGACTTCCATGACATGAAACGAAATTTCAACTA ATCACGATTGTATTTTATAATTATTTGTCAGTTCTTCTTCGGTGAACCATGTTAAAAATTATAACTAACATTTAATATGC CATTTACTATATGTTCTCCTTATCCTTATGTGTTAGAATTAATTTGCAACAAATTCATAATTAGTAGTTGGTTAATTAAA TATTATTAACTTCAAAACAGGGTGACCAAGCGTCTATTATTGGAGGTGCTATTAACTTTGTGAAGGAGTTAGAGCAACTA TTACAATCCATGGAAGGGCAAAAGAAAACGGACCAGCCAGGCTCATCACCACTGCCACCATTTGCTGAGTTCTTCGTGTT TCCTCAGTACACGACGCGTGCTGCAACTCATAGCAACGATACGAACATGGGCGTAGCAGACATTGAGGTTACTTTGGTGG ATAGCCATGCCAATTTGAAGATACTTTCGAAGAAACGAAGAGGAAACCTCATGAAGATCATTGGTGGGATTCAAAGTCTC AGTCTCACAATTCTTCATCTTAATGTTACCACTGTGGATGATTTAGTCCTTTACTCAGTGAGTCTCAAGGTAGGTTAGGT TGCACCTTCATTCTTCTAAATTCTAATTCCTAAATTCTTCTTATGGCATCTTTTTTTATGAGGTTTCAATTTTGGTATGA TAAATTGATTGGAGCAGGTAGAGGAGGAGTGTCAGCTGAGCACGGTGGATGAAATAGCGGCCGCCGTGAATCAACTATTA TCCATGGTCGGAGAAGAAGTGACTTTCAGTTGAATGCAACTAGCTAGAGATTGTGTAATCTTCAAAATGTTCTATTCTTC GCTTCATGAGTCATTAATTAATTTGGGATAAATGTAATTGTGTCCATTAATGGAGGGGGCTATATATATGTATGTTTCTC TTCATTTTGTCCTAATCTGCTCCCTCTAGCTGGTTTTGTTTTTTCACAACATCTAGTTGAAATTCTTAAGGCTGTATGTA CAACCATCTCACTAGTCTAAACGAAATACAAGTCCTTTAATACCGAGTGGTTGATGAAGTAGTACATGCTCTTATTTTAA TTTCAAGTTTTTGTGTACAAGAAAAACTTCTCCGAAAATAAAGCTAGTCCTATGATTGCGGAGGTTTCCAAGTACTAAAT CAATACATCATTGATCATTAGGCAACACATGAAGTCTTAGTGGAAAAGGCTAACTTGACAAAAGTAATTAG
CDS sequence (LotjaGi1g1v0340900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTGAGGCTGTGGTTTTCCCACAAGATCCTGCATTCACATATGGTTGCAAAAATGATTACTTTTTCTCTGCAAC AACTGCTGTTGGAGCATGGGGCACCAACAACAACAACTATGGTCTCCTCCAAGCAGCAGAAGAAGAAGAAGAAAAAAAAC TCCTTGAAATCATCATCAACAACAACAACATGGACCAGGAGCAGAATCTCCATTCAAATAATTGGGATTCTTCTTCCCAC ACATCCCCTGAAGCCTGCACCTTTGATCAATCATCTCCTACACCATTTTCTTCTTCTCGGCGAAAACGACGTCGCACCAA GAGCGCCAAGAACATGGAAGAAATCGAGAATCAGAGGATGACCCACATCGCGGTTGAACGAAACCGCCGCAAACAGATGA ACGAGTACCTTTCTGCGCTAAGATCTTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGAGGT GCTATTAACTTTGTGAAGGAGTTAGAGCAACTATTACAATCCATGGAAGGGCAAAAGAAAACGGACCAGCCAGGCTCATC ACCACTGCCACCATTTGCTGAGTTCTTCGTGTTTCCTCAGTACACGACGCGTGCTGCAACTCATAGCAACGATACGAACA TGGGCGTAGCAGACATTGAGGTTACTTTGGTGGATAGCCATGCCAATTTGAAGATACTTTCGAAGAAACGAAGAGGAAAC CTCATGAAGATCATTGGTGGGATTCAAAGTCTCAGTCTCACAATTCTTCATCTTAATGTTACCACTGTGGATGATTTAGT CCTTTACTCAGTGAGTCTCAAGGTAGAGGAGGAGTGTCAGCTGAGCACGGTGGATGAAATAGCGGCCGCCGTGAATCAAC TATTATCCATGGTCGGAGAAGAAGTGACTTTCAGTTGA
Protein sequence (LotjaGi1g1v0340900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFEAVVFPQDPAFTYGCKNDYFFSATTAVGAWGTNNNNYGLLQAAEEEEEKKLLEIIINNNNMDQEQNLHSNNWDSSSH TSPEACTFDQSSPTPFSSSRRKRRRTKSAKNMEEIENQRMTHIAVERNRRKQMNEYLSALRSLMPSSYVQRGDQASIIGG AINFVKELEQLLQSMEGQKKTDQPGSSPLPPFAEFFVFPQYTTRAATHSNDTNMGVADIEVTLVDSHANLKILSKKRRGN LMKIIGGIQSLSLTILHLNVTTVDDLVLYSVSLKVEEECQLSTVDEIAAAVNQLLSMVGEEVTFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 302 | 302 | 1.1E-112 | – | |
| PANTHER | 1 | 302 | 302 | 1.1E-112 | – | |
| MobiDBLite | 68 | 97 | 30 | - | – | |
| MobiDBLite | 68 | 110 | 43 | - | – | |
| Gene3D | 107 | 183 | 77 | 8.5E-13 | ||
| CDD | 116 | 173 | 58 | 4.52477E-15 | ||
| ProSiteProfiles | 117 | 168 | 52 | 15.586 | ||
| SUPERFAMILY | 117 | 190 | 74 | 2.49E-17 | ||
| Pfam | 118 | 169 | 52 | 9.2E-11 | ||
| SMART | 123 | 174 | 52 | 1.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0340900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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