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LotjaGi1g1v0341200.1

Overview

Field Value
Gene ID LotjaGi1g1v0341200
Transcript ID LotjaGi1g1v0341200.1
Lotus japonicus genome version Gifu v1.2
Description Serine/threonine protein phosphatase 7 long form isogeny; TAIR: AT1G48120.1 serine/threonine-protein phosphatase 7 long form-like protein; Swiss-Prot: sp|Q9LNG5|PPP7L_ARATH Serine/threonine-protein phosphatase 7 long form homolog; TrEMBL-Plants: tr|A0A151TBK9|A0A151TBK9_CAJCA Serine/threonine protein phosphatase 7 long form isogeny; Found in the gene: LotjaGi1g1v0341200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:80317314..80321837) extracted from Lotus japonicus Gifu genome v1.2.

CTTCAGATGCTTCATGGACTGAACACACTAATGAGATTATACAAAACAAAACTTGAGAACGAGCCCAAATGTTAAGCATC AGAGACTACCCACCCAAACCCAATATACATTTTTTTCCATTGGGTGGGGTGTAGTGTGAATGAAGACACTGTCCATCAGA CACACTCAGTCTTCCTGCCATGGAGCATCTTTTTTACATCACAGGTCGCTTCACATGGAGCGACTTCTACCCATCAAACA GTGGGAAGCGAGGAAAAGCCCTAATCACAAACACACTCACTCAGCTTTCTCTATTTGATGGTGAAAAAAGCCTAATATCC AACATCTGCCTCTCCATTCTCAATCGTTCACCTCAGTCTGGTAACAGAATAGGTTGTTTTAGCTGGAAGGTGAGGCCTTG AACTTCAGAATTGCAGAAGGCACATGTTAGAATTTTCTTTGGGGGTCTTTTATTATACGCTTTTCCTTCTAATTTTTTGC TTCCTCTGGTTAATTAACACAGGAACTGAGGAATCAGAAAGCTATTTGGGGGAGCAGAGGAAACAAAGGAGAGCCCTGTC CTGATATAGGTACTAAGCTAAATTTTGGTTGCTAAGTTTGTAAGATGCATTTTTTTGTACTTTTGATTGTTATTTTTTGG GTGCTAATTTAATTTGAGTTAGTTGTTCAACTAAATTGAGCTGCCAGTTGCAAATTGGAAATACTTTTTGTTTTGCACAT TAATTTATTATCATACTGTATTATTACTGAATATTTATGGCCTATAGGCTATAGCATTGTATAAGAGGAGTATGAGCTAT ATGATACAATTCTTGTACATGTTTATTTCCCCCTTCCCCATTCATTTTTTTAACTTGTTCTTTCTCTGGTTGCACTGCAA CTTCTCTTTCTCTTTCTATCTCAGTATAGAATGAGGACTGGTTCTGTTGCTTTCTTTTCGTTTCATGTTTTTTAATAGGA GTTTAAATAAATAATAACAATGAGGAGTGTGAAAATAATTAAGATTTTAAACTTTAAAGTGTTAATACAAGGTGCTTCTT GTGCTTATAAAAACAATGTCTCTTGACTTAACTCACTCACTTGTAGGCATGTTTTATTTTTGAATTTAAATGTATCAATT ATTACTGTGTTGTTTGTTCTATTTTATGAAGGTATTGCATAAAATGGCTGAGGAATCTGTTATTCATCCTGGACCGGTGA ATTCTTCATTGCTGCATAAGCAAAACTTACATGTTTCGGAACACGTTTGGAATGGCACAAATAGAATGCTAAGGGCGAGA CGAGCTCGTGATTCGCGGGTGGATAAATTGATAAGTAGTGTGCCTGACGAAATTGTACCACACCTCAAAGAAGCTGGACT TTATGAGGTAGCTTGCGTTAAGGATGTTAGCCCCCATCATGAGTTATTAACTGCTCTTGTGGAGCGTTGGAGGCCTGAGA CCCACACTTTCCACATGCCGGTGGGTGAGTGCACAATCACCTTACAAGATGTTGCACTGCATCTTGGTTTGAGGGTCGAC GGTCAAGCTGTCACCGGGGTGACGATGTCTGATGATTGGAAGCCTATTGTGACGGAGTTACTGGGAAAGACTCCGGAGGA TTCTGATATGAGAGGAGGTCGACTGAAGATGTCCTGGCTGAATGAACAATTTGCTAATGTGGAGGATCATGTTAATGACC AATTGTCTTTGGCACGCTATGCTCGTGCGTACATGCTACGGTTGTTCGGAGGTGTCATGTTCCCTGACAGCTCAGGTTCT CATGTGCCGTTGAGATTTTTGCCATTGTTACGGAACTTTCGAGAAACTCGAACTTACAGTTGGGGGTCAGCAGTGCTTGC CCAATTGTACCAATCTTTGTGCAAGGCAACAGATGTCAACCGCAGGGAACTTACTGGCTGTAACTTGCTGATCCAATTGT GGGCTTGGGATCGAATTCGTGGAATTGGTCCGCAGGAGGTTCCTGATTTTGTTCCGGGTCGTCCTCTTGGAGCAAGGTAT GAACATATTTACAATAATAAATTTCAACAATTTGTGTCATTGACACGAATGTAATAGTTACACCATGAACAGGTGGAAGA AAGAGACCAAGTGGGATAAGTATCCACTTGCATGGTACCGCCAAAAACTAGATACTATTGGCATTGAGGATGTAAGTTAA TGTCATTAAACTTTTATTAAGATGGTTGATTTTTGAAGAGTATCACTGGTATATAGTTTGTTGTATTTGTGTGTAGTTCG TGTGGGATCCCTACCCAGAGCATGTTCTCGGTGTCCTCTCCCACCAATGTCTGCAGGACCGAGCATTGTGGAGAGCGGTG GTGCCAATGATCTGCTTCCAGATCAATGAGTATCATCAACCAGATCGAGTCTTGAGGCAATTTGGGCAGGAGCAGCATGT ACCTGATCCACCTCTACAAGATGATCGTCTACACGATATTTCGTTGAGGGGAAAGGTTGACAAGGATTGGGGACACCAGA TGCGCAAATATATAGGTTTATGGAATGACAGACACGCACATGTGTACCCGAATCAACCTGTGTTTCAAAGGCAATCTGGG CCTAACGATCAGTATATGATGTGGTACCACCAGCACACACGTCGTTGGATGACGCATCAAGTTGCAGCGAATGAGATAAT GGTGATGTGATTTTAATTAACGTTAAGTTTTTTTTGTTTGTTGAATTTATTTTATGTTAACCCAAATGTATTTGTTATTG TAGGCTGAAAAACTCCATCATGTATGGTACATGCTATCTCGTGAAGGGCGTCACAAATACTCACTTGACCTCGTGCAACA GGAGATCAGCCGCTGCCTTGCCATCACCGGGGAGGTTGACCGGATTCTAGTACCCTCACATGATGCTCCACCTCCGGCTA TGGAGTTGCCAGAGGCAACAAATGATGATTTGCCAGAGGTTGGTAGAAAAGAAGGACAGGGTATTCAGCGTCATCGGGAT ACCTTCACTGCTGAAGTCCATACTATTCCGCCAGTTGGAGTGCCGCCACTGGGTCAGTACTATGTGCCTCCCGAACACCC TGGTGCTGAATATATGTCGTATCGCATTTCCCGTAAAAGAAGGTTACGTCACCTTATATGATTGACTTGCAATAATTAAA AGTGTCACAACATTGTTTGAACGTCCAATACACCTAACGGAATGTTCAAAACTGATGATTAACAATCTCATTAACTCTGT AGCCTTTTGTGGCCACTATGTAAAAGGATCCTGGTGAATGCGGCAACATGTACTCCAACCATCTTGAGAGTTCTTCATGT CTAACAAGATAACTCTAGAAGTCTCCTAAAATGAGACACCTCATGTTGCACAGAATCTCCTCACATGAGGTGACTTCTTT GCATTTTGTCGTGTCTAATAGACAACTCTAAAAGTCTCATAAAGTGAGGTGCCTCATGTTGCACATAAGTCTCCTTACAT GAGGTGTCTTTTTTGCATTTTATGGTGTGAGGGCCATTCATATTTGAGGGGAAACACTTTCTATGAGAATGTGAAATGTC TCATGGATTTCTTTTTCTTTATTGACTATTGTAAACAGAATGATTTCAACCTTTTTCTGATTCTTTTAATTTAAAAAAAA AAAGTTGTTGCGAACATTATAAACTCATCAGTACCTTAAAAATAGAAAGAACAGCTGGCCTTTCTCGTCTTATAGTCTCC CAATTCAGATATGTTGGAATCTTCATACTACTTACCACCTTATTCTGATAAGCGATCGAATTATCAGAGTTTCAAGTTAA GTTATAACTTTCAGCACTTTTGTTGATGTTGTTGATTTGTAAGGAGTTACAACTGTCACTTTCAAACTAGACTTCTATAT CTCTAGTTGTTTTAAACTTGAACTATAGTTTGGTCTATAGCTTATAGAACCAAGTGTTAAGATTGCACCACTGATTCTAA ACATGTGTTGGCCCAATATTTTGACCCAAGAAAGAAAAACGCATTCAGCCCAAAATACTCAGAGTAGTCGAATTCTGACT AAAAGGAAGGAAAAGGGAAATGCACTAAGTTAATGGGGCAGCAAAACTCGACAACAACAATTACTGCTAAACACAGGCAC ATGTAACATGTGCCACATTGACCAAGTCAAATTCTCCCCACGATGGTTGAAAACGTGGCCAGGAAACGGTTGGAGCAGTT GAAGCACACGATCTCCACCACCATGCGCAGAACTTCCGGAGCAAGCATCAGATCGTGGGAGAAACCAGACCCACTAACCC ATCCACCGAGGAAAAAAACCGTCAAGGACACGCAGAGCATGAAATTCTATAAATAGGAGAATCCAATTCAGAAACAAGGT TCCCAACTCAAACTCTGAAAAATTCACCAGAAAGCTCTAATGTCCGCATCAATGAGACTCAAGGAGCAAAACGTGATGAT GGAGGAGTATGCTGCAGAACCAACACTTTAGTTTCCCTGCATTTCAGCTTGTTGCTTTCCAGTTCTTTTGTGTAGTTTGT TTGTCGAAATCTGCAGTTCATGTAGTTTTCATGTTATTTTAGTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0341200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGAGGAATCTGTTATTCATCCTGGACCGGTGAATTCTTCATTGCTGCATAAGCAAAACTTACATGTTTCGGAACA CGTTTGGAATGGCACAAATAGAATGCTAAGGGCGAGACGAGCTCGTGATTCGCGGGTGGATAAATTGATAAGTAGTGTGC CTGACGAAATTGTACCACACCTCAAAGAAGCTGGACTTTATGAGGTAGCTTGCGTTAAGGATGTTAGCCCCCATCATGAG TTATTAACTGCTCTTGTGGAGCGTTGGAGGCCTGAGACCCACACTTTCCACATGCCGGTGGGTGAGTGCACAATCACCTT ACAAGATGTTGCACTGCATCTTGGTTTGAGGGTCGACGGTCAAGCTGTCACCGGGGTGACGATGTCTGATGATTGGAAGC CTATTGTGACGGAGTTACTGGGAAAGACTCCGGAGGATTCTGATATGAGAGGAGGTCGACTGAAGATGTCCTGGCTGAAT GAACAATTTGCTAATGTGGAGGATCATGTTAATGACCAATTGTCTTTGGCACGCTATGCTCGTGCGTACATGCTACGGTT GTTCGGAGGTGTCATGTTCCCTGACAGCTCAGGTTCTCATGTGCCGTTGAGATTTTTGCCATTGTTACGGAACTTTCGAG AAACTCGAACTTACAGTTGGGGGTCAGCAGTGCTTGCCCAATTGTACCAATCTTTGTGCAAGGCAACAGATGTCAACCGC AGGGAACTTACTGGCTGTAACTTGCTGATCCAATTGTGGGCTTGGGATCGAATTCGTGGAATTGGTCCGCAGGAGGTTCC TGATTTTGTTCCGGGTCGTCCTCTTGGAGCAAGGTGGAAGAAAGAGACCAAGTGGGATAAGTATCCACTTGCATGGTACC GCCAAAAACTAGATACTATTGGCATTGAGGATTTCGTGTGGGATCCCTACCCAGAGCATGTTCTCGGTGTCCTCTCCCAC CAATGTCTGCAGGACCGAGCATTGTGGAGAGCGGTGGTGCCAATGATCTGCTTCCAGATCAATGAGTATCATCAACCAGA TCGAGTCTTGAGGCAATTTGGGCAGGAGCAGCATGTACCTGATCCACCTCTACAAGATGATCGTCTACACGATATTTCGT TGAGGGGAAAGGTTGACAAGGATTGGGGACACCAGATGCGCAAATATATAGGTTTATGGAATGACAGACACGCACATGTG TACCCGAATCAACCTGTGTTTCAAAGGCAATCTGGGCCTAACGATCAGTATATGATGTGGTACCACCAGCACACACGTCG TTGGATGACGCATCAAGTTGCAGCGAATGAGATAATGGCTGAAAAACTCCATCATGTATGGTACATGCTATCTCGTGAAG GGCGTCACAAATACTCACTTGACCTCGTGCAACAGGAGATCAGCCGCTGCCTTGCCATCACCGGGGAGGTTGACCGGATT CTAGTACCCTCACATGATGCTCCACCTCCGGCTATGGAGTTGCCAGAGGCAACAAATGATGATTTGCCAGAGGTTGGTAG AAAAGAAGGACAGGGTATTCAGCGTCATCGGGATACCTTCACTGCTGAAGTCCATACTATTCCGCCAGTTGGAGTGCCGC CACTGGGTCAGTACTATGTGCCTCCCGAACACCCTGGTGCTGAATATATGTCGTATCGCATTTCCCGTAAAAGAAGGTTA CGTCACCTTATATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0341200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEESVIHPGPVNSSLLHKQNLHVSEHVWNGTNRMLRARRARDSRVDKLISSVPDEIVPHLKEAGLYEVACVKDVSPHHE LLTALVERWRPETHTFHMPVGECTITLQDVALHLGLRVDGQAVTGVTMSDDWKPIVTELLGKTPEDSDMRGGRLKMSWLN EQFANVEDHVNDQLSLARYARAYMLRLFGGVMFPDSSGSHVPLRFLPLLRNFRETRTYSWGSAVLAQLYQSLCKATDVNR RELTGCNLLIQLWAWDRIRGIGPQEVPDFVPGRPLGARWKKETKWDKYPLAWYRQKLDTIGIEDFVWDPYPEHVLGVLSH QCLQDRALWRAVVPMICFQINEYHQPDRVLRQFGQEQHVPDPPLQDDRLHDISLRGKVDKDWGHQMRKYIGLWNDRHAHV YPNQPVFQRQSGPNDQYMMWYHQHTRRWMTHQVAANEIMAEKLHHVWYMLSREGRHKYSLDLVQQEISRCLAITGEVDRI LVPSHDAPPPAMELPEATNDDLPEVGRKEGQGIQRHRDTFTAEVHTIPPVGVPPLGQYYVPPEHPGAEYMSYRISRKRRL RHLI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46033
8 433 426 4.6E-74 –
PANTHER
PTHR46033:SF12
8 433 426 4.6E-74 –
Pfam
PF10536
65 422 358 2.8E-78
IPR019557

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0341200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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