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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0343000 |
| Transcript ID | LotjaGi1g1v0343000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT4G14103.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q8L7H1|FBL75_ARATH F-box/LRR-repeat protein At4g14103; TrEMBL-Plants: tr|A0A0B2PMN4|A0A0B2PMN4_GLYSO F-box/FBD/LRR-repeat protein; Found in the gene: LotjaGi1g1v0343000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80536927..80541501) extracted from Lotus japonicus Gifu genome v1.2.
TAAATATAATTTAATTGATTTGAAAAATTGAAGTTTAATCAAATAAAATACCAGAATCATCAAAATCTTGTTAGAAAGGG AGATAATCTTCGTCCATGCTTTTTAGGTTTTCTAATCAAATACCCACTTTTTAGGTTTACTAATTCGCTTAGTTTTGAAA ACTCACCGCAGAATTGCTTCTCGCTCTGTCCCTCAGGTGTGTTTTCTTGTCTGTTAGATTGTACAAAATAATTTCGTTTA CACTTTCATGCTTAGGTACGTAGTTATCAGAATAATTGTTTTTCTGTCTCTCAAGTTTGTGTTCCTTAATTAATTTAGAT TGCAGAAAAATCATTCTATTTCTTTGTCTTTTTATTCTTAGGCAGTTATCTGAATTTCTAATTTAATGGATGAGATGTTG ATTCCACCAAATGCAAAGAGAGGTAGGGAGAGTGAGAGTGAGAGTGAAAATGAAGAGAACAAAGATAGACTCAGTGACTT GCCTGATTGCGTTCTCCTTCACATTCTGTCATTTGTGAATGCCAAGTATGCAGTTCAAACTTGCACATTATCCACAAGAT GGAAGGATCTCTGGAAACGTCTTCCTTCCCTCATACTACATTCCTCAGATTTTTCAACTTTTAAGGGTTTCACCAAATTC GTGTCTACAATTTTGACTCTTCGTGATGGCTCAATTGCACTCCATGGTCTAGATTTGAAGCGTCTTGGGCGCATTCAGCC TTGCCTCTTCAAAAGGATCATAAAATATGTCATTTCACACAATGTTCAGCAATTAGGATTGTGTGTCAATTGTGATATTG AACATTTTCCGACTGACGTCTTTTCATGTGAGACTTTGACATATCTTAAGCTCTCTGTTCATTTTAGAGAAGTCAAAACG TTACTTCTGCAATCTTTTAATTTGCCAGCATTAACCACCTTGCATCTAGAACATTTCACCATTTGTGCCAATGGCAATGA CCTTGCAGAGCCCTTCTCAACTTTTATTAGGTTGAATAGTTTGATCATTCACGATTGTAGCATCATTGGTTCACATATCC TCTGCATATCGAGTACAACTCTTTGCAATTTAACCGTGCATAACGATCCTGTGGACGTGTACAAAATTGAGCTATCTTCT CCATGCCTTCGTACCTTTACCTTTACAGGTACTGTTTGTGAGACTCTCAGCGGGAGGAATCTTTCTTCCATTGAACATGT AAATCTTGATATACTTAGGGCGTCAAAGCCTGATGCTGTGCTCAACTGGTTGGAAGAGCTTACCAATATAAAATCATTGA CCATCTCTATAAGTACTCTTAAGGTACATTCTTCACATTTACATGTTCGAAGCTTTATTTTTAAGATGTTTCTTTCATTT CCAAATTATTGTCAAAAATCATTTGACTTGCATTAAATCAAATCCTAAGTCATACTCGCCCCTCATTGCTTAGGTTCTCT CCTTAACTCATGTATTGAAGCTTAAGGTTCCTCCTATCTTGAGTAGCTTGAAGTCAGTGAAGGTTAAACTGAGAGGAGAA AAATCTGTACTGGATGTGGACTTTTTTCTTCAAAACTCACCGTCCGCAAAGATTGACTTCATAAGGTGCTCAGGATGATA TATACACAACTTTTCAGGGAGAGATACTTATAATTACTATGATTTTTTCTTCCTTGGATGAATTAGGAGTCCCTCAAATG ACTTTGATACTTGAAAGCACCCTCTCCTTGCTTGATCTGGCACTATACTACTATAAATTTGGGTGTTAGATGAAAGCGTT GGTCCATCGGGGCCTTAGGGGCAATCATCTGCTGCTGTATAAAATAATTTGTTAGAAGAGGTGTCTTCCTACTTAACATG GTCTCAGAATTTGTCAGCTTTTTTTCTTTGCTATAGAGAAGGGGGACAAAGAGCTTCTTTATACTATGTTTTGCTAGGCT ATGGGCAACTGGTTGTTCTCTAAATTCTGTTTGTTCTTAGTTATAGCTTAGTCTATTTTTGATCCTTTCTTCTTTTCTCT TGTCTCTCTCTTTGAATTTGTTATTTGAGTTTTAGGGAATTTAGTTACTCTATCTAATTTTTTTCATCAATCGATTGAAG TAATAGAATCCCCAAAAATTTGAAATTCAAAAAAAATTCAATTACATAAATATGATTTATTTGGTAATCACTTTCAATTC AAAGGTAAATTTTAGGGCAGGTAAAAGGTTATTCACCAGTGCAACAAGATAGAACGAAGAGGTGTACTATCAACACTTTC TCATTAATTAGTCGAAATTTATGTGGTTTTTATATTTTTAGTAGACCTCAGTTGGAGTATTGAAGAAACTAGAAAGTGTT GAAAAGAGAATATTGCTAGTAGATAAAGATGTGGAATGTAAGCAAGTAACTATACAAATATCTTGAGCAAAAATGAAAAT TTGGCTCCGTCCATTATTTTTAAACATTTCCCTCCACTGAAAATGAAAAGGCAACTGCTATATATATACATGGTATTGGT ATCGGTATTGGAACAGAACCGCCTTTTCTCTTTCACTCCACCACAATTGAAATCACGACGAGATATTTCTATTTCTCATT TCATTTTCTCTGTTTCAAAAATTTTCATACTTTCTGATACTCAAATCCAATTTTGCTAAATGTTTGTTACTCCCAAATGT CTGTTCATTTAGATTGCAGAAAATTATTCCTTTTTTTTTTCTTCCTTCGTTCATGCATAAGACTGATCTTAATGTCAAGT TCAACAGATGAGATGTTGATTCCGCCAAATGCAAAGAGAGGGAGGCACAGTGAGAGTGAGAATGAAATTGAAGAGAACGA AGACAGACTAAGTGACTTACCCGATTGCATCCTCCTTCACTTTTTGTCATTTCTGAACGCCGGACGTGCAGTTCGAACTA GCATGTTATCCACAAGATGGAAGAATCTCTGGAAACGCATTCCTACTCTTAATTTACGCTCCTCAGATTTTTCCACTGTG AAGAGTTTCACTGTATTCGTGTCTACAATTTTGACTCTTCGTGATTGTTCAATTGCCTTGCACCGTCTCCATTTTGATCG TAATGGTTTCGTCGAGCCTCATCTCCTCAAAAGGGTCGTAAACTACGCTATTTCACACAATGTCCAACAGTTAGCTTTGT CTGTCACGTGTGTGACATTGAACGCATTCCGTCTTGCCTTTTTTCATGTCAGGCTTTAACATCTCTTAAGCTCTCAGTTT ACCCTAAATATCCTAAGTTTGAGAAGACATTGTTTCCGAAATCCCTTAATTTGCCAGCACTGACAAGCTTGCATCTATAT AAATTTGCATTTCTGGCAAGTGACAATGACCGTGCTGAACCCTTTTCAGGCTTCAACAGGCTGAATAGTTTGATCATTGA AAACTGTAACATCAAGGATGCACAGATTCTCTGCATATCAAGCGCAACGCTTGTCAATTTAACAATGAAGTGTCGTCTTT ATGAAGATTTTTACAACCTCGAGCTATCTTCTCCCAGTCTTCGTAGTTTGGCCTTAAAGGGCACTCCTAGTCTGCAACTT TGTGGGTGCAATCTTTCTTCTGTTGAACAAGTAGATATTGATGTTGAAATGTTGACAAGTTCCCCCAAGTCTCCATCGAT TCTGCTCAGCTGGCTGCAAGAGCTTGCTGATATAAAATCATTGATTGTCTCTGCAAGTACTCTCCAGGTACCTTCACATT GCATGTTTTGAGACTTTAGTGTTACTTTCTTTTTAATAGCTTGTTTTTATCAAATTATTTTTCCTCAGAATCAATTCTGT ACAAAAATTTCTCTTTTGATTTTAGAATCAATTATAGAATGATTTCCAAACATGTATTTAGAAATGCTATAAGATGTTTC ATGTTTGTTTTAATGTTTTTTCATTTCAAAACTTGATAAGAGAAAAATTTGACTTGCATTTAGTGAATCTTAATTCATAC TCATCCCTCATTGCTCTCTTCTTTGTTCCTGATTTATTGAAGCTTAAGCTCCCTTTTCTTGGTGGCTTGAAGTCATCGAA AGTTATAGTAAGACCAACTTCAAAAGGATTTGCCATGACAATGAGAAATTCCATGTTAGGTAAAGTATCCTGGAGACAAT TTCTTAAGTTAATGAAAGCAGCATTGGAAACATCTCCACCTATGCCTGATGGAATAGTGGACATTTTGCTTCAAAACTCG CTGTCCGCAAAGGTTGACATCATAGATTGCTCGAGGCAAAAGGAGCATTCAAGATTTTAAACAGAGATTCTTATAATTGG TTTGGTGTTAGTTATCTAATGTCTGGTGTTAGTTATCTAATGTCTTCCTTCTCTGTTTTTGTTCCCCTGAACCTCTCTGG TGTTTCTGATCATCAGTGGGCAAGTTACTAGTTCATTGGTTAGAGAAATAAGTTGTATGTGTATACTGAATTGATTTTAT CAAATCTCAGCTTAAATTGATCCTCTATAGCAATGATGAAGGTAGTGCTATTGTTTGTATAAAATGAAAGAAAGTTATTG GTGGTTTGAGAAAATTAAATGTTTTATACTTTTATGGTTAATGAAGGTTGATGAGAAGAAAGCAAGAAAGAAAGTATTAA TGCTTACACGTTGAA
CDS sequence (LotjaGi1g1v0343000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAGATGTTGATTCCACCAAATGCAAAGAGAGGTAGGGAGAGTGAGAGTGAGAGTGAAAATGAAGAGAACAAAGA TAGACTCAGTGACTTGCCTGATTGCGTTCTCCTTCACATTCTGTCATTTGTGAATGCCAAGTATGCAGTTCAAACTTGCA CATTATCCACAAGATGGAAGGATCTCTGGAAACGTCTTCCTTCCCTCATACTACATTCCTCAGATTTTTCAACTTTTAAG GGTTTCACCAAATTCGTGTCTACAATTTTGACTCTTCGTGATGGCTCAATTGCACTCCATGGTCTAGATTTGAAGCGTCT TGGGCGCATTCAGCCTTGCCTCTTCAAAAGGATCATAAAATATGTCATTTCACACAATGTTCAGCAATTAGGATTGTGTG TCAATTGTGATATTGAACATTTTCCGACTGACGTCTTTTCATGTGAGACTTTGACATATCTTAAGCTCTCTGTTCATTTT AGAGAAGTCAAAACGTTACTTCTGCAATCTTTTAATTTGCCAGCATTAACCACCTTGCATCTAGAACATTTCACCATTTG TGCCAATGGCAATGACCTTGCAGAGCCCTTCTCAACTTTTATTAGGTTGAATAGTTTGATCATTCACGATTGTAGCATCA TTGGTTCACATATCCTCTGCATATCGAGTACAACTCTTTGCAATTTAACCGTGCATAACGATCCTGTGGACGTGTACAAA ATTGAGCTATCTTCTCCATGCCTTCGTACCTTTACCTTTACAGGTACTGTTTGTGAGACTCTCAGCGGGAGGAATCTTTC TTCCATTGAACATGTAAATCTTGATATACTTAGGGCGTCAAAGCCTGATGCTGTGCTCAACTGGTTGGAAGAGCTTACCA ATATAAAATCATTGACCATCTCTATAAGTACTCTTAAGGTTCTCTCCTTAACTCATGTATTGAAGCTTAAGGTTCCTCCT ATCTTGAGTAGCTTGAAGTCAGTGAAGGTTAAACTGAGAGGAGAAAAATCTGTACTGGATGTGGACTTTTTTCTTCAAAA CTCACCGTCCGCAAAGATTGACTTCATAAGGTGCTCAGGATGA
Protein sequence (LotjaGi1g1v0343000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEMLIPPNAKRGRESESESENEENKDRLSDLPDCVLLHILSFVNAKYAVQTCTLSTRWKDLWKRLPSLILHSSDFSTFK GFTKFVSTILTLRDGSIALHGLDLKRLGRIQPCLFKRIIKYVISHNVQQLGLCVNCDIEHFPTDVFSCETLTYLKLSVHF REVKTLLLQSFNLPALTTLHLEHFTICANGNDLAEPFSTFIRLNSLIIHDCSIIGSHILCISSTTLCNLTVHNDPVDVYK IELSSPCLRTFTFTGTVCETLSGRNLSSIEHVNLDILRASKPDAVLNWLEELTNIKSLTISISTLKVLSLTHVLKLKVPP ILSSLKSVKVKLRGEKSVLDVDFFLQNSPSAKIDFIRCSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| SUPERFAMILY | 16 | 74 | 59 | 4.19E-11 | ||
| Gene3D | 23 | 338 | 316 | 2.6E-19 | ||
| PANTHER | 24 | 354 | 331 | 1.1E-77 | – | |
| PANTHER | 24 | 354 | 331 | 1.1E-77 | – | |
| Pfam | 28 | 68 | 41 | 4.7E-7 | ||
| SMART | 32 | 72 | 41 | 3.6E-4 | ||
| SUPERFAMILY | 58 | 326 | 269 | 2.86E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0343000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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