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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0343200 |
| Transcript ID | LotjaGi1g1v0343200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT1G78760.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760; TrEMBL-Plants: tr|A0A072UNA8|A0A072UNA8_MEDTR F-box/RNI superfamily protein; Found in the gene: LotjaGi1g1v0343200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80568629..80572183) extracted from Lotus japonicus Gifu genome v1.2.
TATTGCCACCCGTACCACTAATCTAATCCAAGGCTGTATATTACGCTATGGAGTAAAATCATGCTTAGCAAGCAGAACCT GAAGCGTTAGACTTGAAAATCGCTCTGTTTATGGTTGCATTTGTATCAATAGCAAACAACACAAATCAGCTGCAACTGCA ATCACCACTCACTTGCGAGGTACTTTTTTGGATGAATTTCATTCCCTATTTCCCCCCAAACCCAAATTATCGTTCTTGCT GATCCTTCGATTCAAATGTTAGGGTTTCCCAGATTTTTTGCCACTGCAAATCTGCAATCGAAAACGAATTTGCATAACTC ACCTCTCAAATGTGATTTATAATCCTGTTTACCTTTTCATGCTTCATTACTTATCTGAATTATTGTTGGTTCCTCACTTG ATTTACATTGCAAAAATATCATTCTATTTTTTTTGGATTTTCATGCTTAGGTACTTATCTGAATGTCTAATTCAACTGAT GAGATGTTAATGCCGCCGAAGGCGAAGAGAGGAAGACAAAGTTTGAATGAAAATGAAAATGAAGATAACAAAGATAGACT CAGTGACTTGCCTGATTGCATTCTCCTTCACATTCTATCATTTGTGAAAGCCAAAGCCGCGGTTCAAACTTGCATATTGT CCACAAGATGGAAGGATCTCTGGAAACGTCTTCCTTCCCTCATACTACTGTCCTCAAACTTTTGGACATATAAGAGCTTC ACCAAATTCGTGTCTCGGCTTTTGACTCTTCGCGATGGCTCGACCGCGCTGCACGGTCTAGATTTTGAGCATGATGGTCA CATTCAGCCTCACCTCCTCAAAAGGATTGTAAAATATGCTGTTTCACACAATGTCCAACGATTAGGATTGTCCGTCACGT GTGCTATTGAACACTTTCCGCCCAGCGTCTTTTCGTGTGAGACTTTGACATCTCTTAAGCTCGCAGTTCAACCTAAAGGT TCTCTTTCGGAGCGAACGCTACTTCCGAAATCTCTTAATTTGCCAGCATTAACTACGTTGCATCTAGAGCATTTTGCCTT TTGTGCAAATGACAATGACCGTCGTGCAGAGCCCTTTTCGTCCTTTAAAAGGTTGAATAGTTTGATCGTTGGCAGTTGTA GCCTCAGTGATGCTGATATCCTCTGCATTTCAAATACATCTCTTTGCCATTTAACTGTTTTTAATCAGTTTCTGGACTTG TACGAGTACAATATTGAGCTATCTTCTCCAGGCCTTCATTCCTTTGCCTTTACTGGTACTCCTTATCAGCTACTCAGTGA GAGCAGCAATCTTTCTTCCATTGAAGAAGTGAATATTGATGTAGCAATTTGGTATGCTAATTTGGAAAAGCTGTCTCCTT TGGTTCTACTCATCTGGCTGGCATACCTTGCCAATATAAAATCTTTAACAGTCTCGACAAGTACTCTTCAGGTACATTCT TCGCATTTGCATGTTAGTATATGATTCTTTCATTCTAACATTTTGTTAAAAATCATTTCACTTGCGATCCTAACTCATCC TCATCACTCATTGCTCAGGTTCTCTGTCTACATCCTAAGTTACTGAAACTTAAGTTCCCTTTGTTGGGTAGCTTGAAGTC GTTGAAAGTAATACAGAAACCACTTTCACGTGGATTTATTGAGGTACTGAGAGAAGTCAAGTTACAGAAAGCAACTACCA AATCACCGAAAGCTGCTGCTGCCATGTTACCGAAAGCTAGTAAGGAAGATTCATTTTCATCTATACCTGATGGAATAGTG GACTTTTTGCTTCAAAACTCGCCATCTGCAAAGGTTGACATCACAAGTTGCTCAAGATGATGTTTATAATTACTAGAGTT ATTTCTTCCTTGTCTGTTTCCCTCATTCTCTTTGGTTATATCTATCTATGCTTATTAGGAGTCCCGTGGGACTTGGGTTG AGAAACAAATTCTACATGTCAAATGAAAGAAAGTAAATAGGTGATTTGTGGTAAGATCTTTATTTTCAAGTAAATGAAGG TTGGATGAGAAGAAAGGAAGAAGGAAAGAACTATTGTATTGACATTCATTTTCTGTCATGACATTTTGGATCTCATTTTC ATATGTTCAAGTTTTCATTAGCGTTTGTGTTGATATTTAACAAATCATGTTCACTTGGGAGGGATTACATACCAATCTTT TTATTAAAGATTCATGTCAGCACTCAGCAAGCCTTTTTTCTTAGTGCATTTCTGGTTTCTTCTTGTATCATGTTTACTTT TTCAAGTACATCATTATCTCTTGTAGTGTAGGTCGCTTATTTGCTGATTTATGAGTCCAGCAAGCGATATTTGTCAGTTG TCACACTGAATTCACATTGCTGGGCAAGTTGGTGTGATAATTTATGGGTACAGATTTATTTTTTTACTTAATGGTATGAT AATGGACAATATATACAGGTGCTCTATTATCACTGGCTTCTTTATTTTTATCAAAGTTTCCTAAAATAAAGTGCTTCTCA ATTGCTAGAAGGGTGGGATTAATCTCACTTATAAATTACTTGTCATATTACTGATCCACATTCTGCTTATACTCAAATTT CAAGTGGTAACAGTATGCATCTCCTTCAAATTTGTATATTATTTTGCAATATATATCTTTTGAACTCTCATTCTCATATT CTCATGCTTACTCTCGCTAAGAGTTCTAGCTTGTCATCCAGATTTCGACAAGTTGGTGTCCCTATGAGCTGTGTCTCGTT TCTGGTGGCTTTAATTCCATGGGGAAAAGCAGAGATTCATGCTTGGTTAGGTTATCATGAAGAGATTCATGCTTCCCTTG CTTGATTTTCCTCAATGAGGGGGAAGTTTTGGGCAACCCCGTGTTGGGATGAAGTATTGGAAGAACTGCGCAGTAATTTT TCCTATCCTCTAATGGAAAAGGGAGGGAAGGATTGGAACCACTGCAACACTCATTTCCTTTAAGTTAAAGGAAGTGTTTC TACAAACCAAGGCATATGTGGTTCTATTTCTTTTGACTTTTTGAATGCTTTAGGAACATCCATTGTGTTTTCCTCAGAAC GGATTTTGAATTATAGCCAAGTTGTGGTCAGCTGTTTGGCTAGAAACTCGTTCATGGCGAGTTGTGGTCCTGACATATCT ATGCTTAACTTCTTGCCTCTTATGATTTCTTGTTCGTTCATGGATAACGAATTTCTCAGCTTGACGACCTGCAAATTGAG AATCTTCTTCCTTGTATGTATGCGTGAAGCATGCACTGACGTTTGTTGCTCCTCAATGCGACGCTCCAGTCGTTTTGTGA AATTATCAAGAATTGGAGTGTTGTTTCCAATTTCTTCCTTTTGGCGAGAAGGAGCTCTCACAGGTTCCGGTTGCGACATT TCAAGAACTTTTAGTTTTCTTGAACTGGGCTACCATGGGGAAGCTATTTTTGACTTGTATCCATCATGGCAATAGGAATT TATTTACAGAATCTAAGATAGCTCTCTGATTGTGTGTGTAAATCATTCTAATTTATCAAATTTGATAATTTGAAATTGAG GAGAACTCCGTTTACACCTGTGAGAAAACATTTTC
CDS sequence (LotjaGi1g1v0343200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAATTCAACTGATGAGATGTTAATGCCGCCGAAGGCGAAGAGAGGAAGACAAAGTTTGAATGAAAATGAAAATGA AGATAACAAAGATAGACTCAGTGACTTGCCTGATTGCATTCTCCTTCACATTCTATCATTTGTGAAAGCCAAAGCCGCGG TTCAAACTTGCATATTGTCCACAAGATGGAAGGATCTCTGGAAACGTCTTCCTTCCCTCATACTACTGTCCTCAAACTTT TGGACATATAAGAGCTTCACCAAATTCGTGTCTCGGCTTTTGACTCTTCGCGATGGCTCGACCGCGCTGCACGGTCTAGA TTTTGAGCATGATGGTCACATTCAGCCTCACCTCCTCAAAAGGATTGTAAAATATGCTGTTTCACACAATGTCCAACGAT TAGGATTGTCCGTCACGTGTGCTATTGAACACTTTCCGCCCAGCGTCTTTTCGTGTGAGACTTTGACATCTCTTAAGCTC GCAGTTCAACCTAAAGGTTCTCTTTCGGAGCGAACGCTACTTCCGAAATCTCTTAATTTGCCAGCATTAACTACGTTGCA TCTAGAGCATTTTGCCTTTTGTGCAAATGACAATGACCGTCGTGCAGAGCCCTTTTCGTCCTTTAAAAGGTTGAATAGTT TGATCGTTGGCAGTTGTAGCCTCAGTGATGCTGATATCCTCTGCATTTCAAATACATCTCTTTGCCATTTAACTGTTTTT AATCAGTTTCTGGACTTGTACGAGTACAATATTGAGCTATCTTCTCCAGGCCTTCATTCCTTTGCCTTTACTGGTACTCC TTATCAGCTACTCAGTGAGAGCAGCAATCTTTCTTCCATTGAAGAAGTGAATATTGATGTAGCAATTTGGTATGCTAATT TGGAAAAGCTGTCTCCTTTGGTTCTACTCATCTGGCTGGCATACCTTGCCAATATAAAATCTTTAACAGTCTCGACAAGT ACTCTTCAGGTTCTCTGTCTACATCCTAAGTTACTGAAACTTAAGTTCCCTTTGTTGGGTAGCTTGAAGTCGTTGAAAGT AATACAGAAACCACTTTCACGTGGATTTATTGAGGTACTGAGAGAAGTCAAGTTACAGAAAGCAACTACCAAATCACCGA AAGCTGCTGCTGCCATGTTACCGAAAGCTAGTAAGGAAGATTCATTTTCATCTATACCTGATGGAATAGTGGACTTTTTG CTTCAAAACTCGCCATCTGCAAAGGTTGACATCACAAGTTGCTCAAGATGA
Protein sequence (LotjaGi1g1v0343200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNSTDEMLMPPKAKRGRQSLNENENEDNKDRLSDLPDCILLHILSFVKAKAAVQTCILSTRWKDLWKRLPSLILLSSNF WTYKSFTKFVSRLLTLRDGSTALHGLDFEHDGHIQPHLLKRIVKYAVSHNVQRLGLSVTCAIEHFPPSVFSCETLTSLKL AVQPKGSLSERTLLPKSLNLPALTTLHLEHFAFCANDNDRRAEPFSSFKRLNSLIVGSCSLSDADILCISNTSLCHLTVF NQFLDLYEYNIELSSPGLHSFAFTGTPYQLLSESSNLSSIEEVNIDVAIWYANLEKLSPLVLLIWLAYLANIKSLTVSTS TLQVLCLHPKLLKLKFPLLGSLKSLKVIQKPLSRGFIEVLREVKLQKATTKSPKAAAAMLPKASKEDSFSSIPDGIVDFL LQNSPSAKVDITSCSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| Gene3D | 27 | 377 | 351 | 8.5E-16 | ||
| PANTHER | 28 | 411 | 384 | 2.7E-88 | – | |
| PANTHER | 28 | 411 | 384 | 2.7E-88 | – | |
| SUPERFAMILY | 30 | 86 | 57 | 5.36E-11 | ||
| Pfam | 32 | 72 | 41 | 1.8E-5 | ||
| SUPERFAMILY | 76 | 358 | 283 | 1.92E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0343200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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