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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0343300 |
| Transcript ID | LotjaGi1g1v0343300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT4G14096.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096; TrEMBL-Plants: tr|G7JSX5|G7JSX5_MEDTR F-box/RNI superfamily protein; Found in the gene: LotjaGi1g1v0343300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80599310..80603301) extracted from Lotus japonicus Gifu genome v1.2.
GTAGCCTAAAGGGTGGGGCGCAAAACCTAAATCCCGACTTGAACTCTTTCACTCTTCCATTGCCCACTCATTCCCTTTAA CTCCATATACTTTTCGGTGATGTGCGAGCGTTTCTCGTCAGTGTTTTAGTGTCGACTTCACCGTTCAGGGAGACGGCGGT GCTGACGCGACGGCGCCATCGGTGTTTTGCCGCTCTAGGGTTTACAAATTACACCCAATCTGCAAAATAAACCAAACGCG AGAGGTATTTCTCATTCCCTGAACCAATTTCGTTTTCTATTTTTCCCGAATTATCATCCTGTATACTTTCTAGGTTGTTT CCCCCATTGCTTACAGACTTGGCTTAGTTTTTGAAAACTCACTGTATAATTGCTGCTTTGTCTCTCTAGTCCGTGTTCTT TGATTTAGATTGCAGAAATTCATTCTATTTCTTTTGCATTTTTATGCTTAGGTAGGTAGTTATCTGAATGTCTAATTCAA CGGATGAGATGTTGATTGCGCCGAAGGCGAAGAGAGGGAGGAACAGTGAGAATGAGACTGAAATTGAAGACAACAAAGAC AGGCTCAGTGACTTGCATGATTGTATTCTCCTTCACATTTTGTCATTTCTGAAAGCCAAATACGCAGTTCAGACATGCAT GTTATCCAAAAGATGGAAGGATCTCTGGAAACGCCTTCCAAACCTTATTTTACTCTCCGCAGATTTTGACACATTCAAGT TTTTCACCAAATTCGTGTCTACCATTTTGACCCGTCGTGATGGCTCCACTGCGCTGCACGCTCTCGATTTTGAGCGTATG GGTTGCATCCAGCCTCCCCTCATCAAAAGAATTGTGAACTATGCTGTTTCGCACAATGTCCAGCAATTAGGAATCTATGT CGAATGTGACATGCAGCACCTGCTACCTTGCATTTTCACATGCCATACTTTAACATCTCTTAAGCTCATAGTTTACCCTA AAGGTTACAGTGATATCACTTTATTCCCTAAATCTCTGAATTTGCCAGCATTAACCACCTTGCATCTGGGGAATTTCACC TTTTGCTCAAACGACAACGACCGCGCCGACCCATTTTCTGCGTTTAACAGATTGAATAGTTTGATCATTGACCATTGTAA GCTAAAGGATGCACGAACTCTCTGCATATCAGGCATGGCGCTCGTCAACTTAACTCTGTGTTGTCCTACTTTGGATTTCT ACACAATTGAGCTATCCACACCATGTCTTTATAGGTTCACTTGCGCAGATTTGCCCTCTCAGTACCTCTGTGGGAGCGGT CTATCTTCGGTTAAGGAAGTAAATATTGATGCAGATATTTTGTTAAGTTCTCCGGATCCTCCTCTAATTCTCCTTAGCTG GCTGCAAGATTTTGTTAATATAACATCATTGACTGTTACTACAAACACTCTTCAGGTACTACCTTAGCATGTTTTGAGGC TTTGTTTTTACTTTCTTCTTAAGATGCTGTTTTAATTTCGATTTTTTGTTAAAAATCAATTGACTTGCATTATCTAATTC ACCCTCATTCTTAGGTTCTTTTCTTAGTTCCTGATATATTGAAGATTAAGCTCCCTTCATTGGCTAACTTGAAAAGACTG AAGATAAAACGGGAACCACTTTCATACATGCTGACACATGTGATGAGAGGTGTGAGGTTAAAAAAAGCAGCTACTGAGTC ACGGAAAGAAGCTGCCAAGTTACGGAAAGAAGCTGACATTTTATGGAAAACAAGACGACTGCGAACTGCACCTTTCACCG ATGAAATAGTGGACTTTTTGGTCCAAAATGCGCCGTCAGCAGAAGTTGAAATCATAGATTGCTTAATGTGAAGTTGGCAT TCATTTTTTTAAGAAGGTAACATGTATTTGTTTTTGCATCCTTCCCCTTTTTTTGCGAGGTCTCTGTGTGTATAACTAAC TGATTATCTAGGGGTTATTATGAGAGGCCCTTAGGTAGAGAAACAAATTTTGTTTAATAACATGATTGTATCCTATTTCA GCTTAAGTTCATGCTCCAAAGCTAGGATTGAGAGTGGAGTTATGCATTTGCTTGTCTTGAGATTAATTAAGGTTGATGAG AACATAAAAAGAACAAATTCATAGATGTTGAAGAAACATAGAAAATAGAATCTTAGTGCGTTTTATTTGCTAAAACATGA TGTGCTAGATAGACTTAAATACTTGTTTCATGTTTGATTCTAAAAATGGTCACGAGACAAGATAAAATAGAAGATGAAGG ATAAGACAGAAGTCTTAAAATCTATTAGTTAATCATTAAAAGACTTTATTCCCCCACATAACATCATCCAAAAATAAGAA AATGTTCAACTTTTTCTGCCTCTTTTTGAAAACTCTTCCTCAAGTCCACTTCTCTCCCTCAACCCTCATCAACCATCACT TCTTGAATAGTTTCCCTTTTCTCCCTCAAAATTATTTGTGCTGTGCATCAACCACCATCGCAATAGATAGAACCAAAACT TGCACTGTGACTCAGCTACTTGTACTGTGTTCTCTACTCATGGCTTGTAACATGCATTAAATTCTATGATTGAGTAGAAA ATTGTATATTTTGGTCAATTTTGATATGACTGAATAGCAAAATCATCTTAACGTTTGTTATATAAAAAAAACAGCATTGT CTTTGTATTATTTTGAAGCAAGAGATTCATAACGCCTGGTATTTGCTTGCTCATAGTTGTCTTCTAAAAATGAGAAGCAA ATCTTGTATTAACTTTACAAGTGAAAATACAAAAATTGAATTTGTTGGTCTTTAGGCAGCATTTACAGATTCTATATAGC TCATTCAACATCCAATATCATTAGAAATGTAAGTTTTTATCCTTGCATCCATTACTGATATGTCTCCTATTCCATACAGA TCTTGATGCTATGATGTGAATGTGAGAATGGAACAAGTTACCAATTCTGAATTTGATGCATCCTAGTGTCAGTTTTGGTT GTGATCAAGTTCTATATCTATGAGTTCTTTTATGCAGACCCTTGGGACCTTTGTTGTTTTCTTTACTGTCAAATTTTTCA GCATTAAACATTCCTGTAAACTGTAAAGAGCTGGATACCTTGACCAAGTTTGCATGGTAAATTAGTCATTGCATCTGTAT GCAAAGTTGTCCCCCCATTTTATGAACTTGAGCATCCGTATTGGTTTCTGCCTTCTGCCACAAGCATTATCTGCATCATT TTCTCCCTTCTTTATTTGGCAAGAATAAAAAAGATTAACAAAAAATCACCTATTGTTGTTAAGAGAAGAAAATGCACAAA TGTCCTTAAAAATGTCCATGCATTAACCATCAAACTGGAAGTGTTAATTTTAGTATGGATGACGATTCCACGAAACAATA GTCTTCAAAAATCTGCAATATTTTCTTTTTCCGGGATATCAGAAATGAAGATGAATTTGTGTGCAGATATTCTGTTGCAG CACTGCATGTATTTAGTTATTGACTTATGGAAAAACTCCCGTGAACTATCAGCCTTAATACATCCTCTGCCCATCAAGAT GGAAAAAGTTGTGTTCACACCCAATTTTATGTGTAAATGGAGTGGAAAAAAAGGGAGATATGAAGAGAAAAAAAAAAGAG AAAGTAAAAGATATGATAGGTGATACAATTGAACGAGAAAAAAGATGAGTTTAATTTCTTTAAGTTTTTTTACACCGTCA ACCAATCAGATTTCAAGAATGTGAGAAAATCTCTCTTTTTATTTAATTTTATTAATTGATGTGACTCATCCTTAAAATCT GATTGGTTGACGGTGTAAAAAAACTTGGCTTAATTGCACTTTTGGTCCCCCACGAATGACAAATGTGCATTTTTGGTCCT AAACGTTTGAAAATAGCAGAATCAGTCCCACACGTTTGTCTCCGTTAGCGTTTTTGGTCCCTCCGTTAAAATTCTAACAA AAGTTACTTATTGCACCCTCATTTTACTATTCTCACCCCTCACTAGGACTAGAAATGCACATTTATCATTCG
CDS sequence (LotjaGi1g1v0343300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAATTCAACGGATGAGATGTTGATTGCGCCGAAGGCGAAGAGAGGGAGGAACAGTGAGAATGAGACTGAAATTGA AGACAACAAAGACAGGCTCAGTGACTTGCATGATTGTATTCTCCTTCACATTTTGTCATTTCTGAAAGCCAAATACGCAG TTCAGACATGCATGTTATCCAAAAGATGGAAGGATCTCTGGAAACGCCTTCCAAACCTTATTTTACTCTCCGCAGATTTT GACACATTCAAGTTTTTCACCAAATTCGTGTCTACCATTTTGACCCGTCGTGATGGCTCCACTGCGCTGCACGCTCTCGA TTTTGAGCGTATGGGTTGCATCCAGCCTCCCCTCATCAAAAGAATTGTGAACTATGCTGTTTCGCACAATGTCCAGCAAT TAGGAATCTATGTCGAATGTGACATGCAGCACCTGCTACCTTGCATTTTCACATGCCATACTTTAACATCTCTTAAGCTC ATAGTTTACCCTAAAGGTTACAGTGATATCACTTTATTCCCTAAATCTCTGAATTTGCCAGCATTAACCACCTTGCATCT GGGGAATTTCACCTTTTGCTCAAACGACAACGACCGCGCCGACCCATTTTCTGCGTTTAACAGATTGAATAGTTTGATCA TTGACCATTGTAAGCTAAAGGATGCACGAACTCTCTGCATATCAGGCATGGCGCTCGTCAACTTAACTCTGTGTTGTCCT ACTTTGGATTTCTACACAATTGAGCTATCCACACCATGTCTTTATAGGTTCACTTGCGCAGATTTGCCCTCTCAGTACCT CTGTGGGAGCGGTCTATCTTCGGTTAAGGAAGTAAATATTGATGCAGATATTTTGTTAAGTTCTCCGGATCCTCCTCTAA TTCTCCTTAGCTGGCTGCAAGATTTTGTTAATATAACATCATTGACTGTTACTACAAACACTCTTCAGGTTCTTTTCTTA GTTCCTGATATATTGAAGATTAAGCTCCCTTCATTGGCTAACTTGAAAAGACTGAAGATAAAACGGGAACCACTTTCATA CATGCTGACACATGTGATGAGAGGTGTGAGGTTAAAAAAAGCAGCTACTGAGTCACGGAAAGAAGCTGCCAAGTTACGGA AAGAAGCTGACATTTTATGGAAAACAAGACGACTGCGAACTGCACCTTTCACCGATGAAATAGTGGACTTTTTGGTCCAA AATGCGCCGTCAGCAGAAGTTGAAATCATAGATTGCTTAATGTGA
Protein sequence (LotjaGi1g1v0343300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNSTDEMLIAPKAKRGRNSENETEIEDNKDRLSDLHDCILLHILSFLKAKYAVQTCMLSKRWKDLWKRLPNLILLSADF DTFKFFTKFVSTILTRRDGSTALHALDFERMGCIQPPLIKRIVNYAVSHNVQQLGIYVECDMQHLLPCIFTCHTLTSLKL IVYPKGYSDITLFPKSLNLPALTTLHLGNFTFCSNDNDRADPFSAFNRLNSLIIDHCKLKDARTLCISGMALVNLTLCCP TLDFYTIELSTPCLYRFTCADLPSQYLCGSGLSSVKEVNIDADILLSSPDPPLILLSWLQDFVNITSLTVTTNTLQVLFL VPDILKIKLPSLANLKRLKIKREPLSYMLTHVMRGVRLKKAATESRKEAAKLRKEADILWKTRRLRTAPFTDEIVDFLVQ NAPSAEVEIIDCLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| MobiDBLite | 11 | 27 | 17 | - | – | |
| SUPERFAMILY | 21 | 76 | 56 | 4.19E-10 | ||
| PANTHER | 28 | 409 | 382 | 1.6E-87 | – | |
| PANTHER | 28 | 409 | 382 | 1.6E-87 | – | |
| Pfam | 32 | 71 | 40 | 2.6E-5 | ||
| SUPERFAMILY | 130 | 346 | 217 | 8.63E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0343300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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