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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0343500 |
| Transcript ID | LotjaGi1g1v0343500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A0B2P550|A0A0B2P550_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0343500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80629041..80632375) extracted from Lotus japonicus Gifu genome v1.2.
CTGAATTAAGGAGACAATGATGATAATCATTCCTCCCTAATATCATATGTTTAGCAAGTGAGTATTGGTGTTATAATTTC ATCAAATTACTACATGGAATTTTATGCTAAGATTATTTTTTTAATTTTCCTTATGGAAATATTTCACAAATGGAAAATAT TATGTTAGAAGGCCAGGTCTAGATGGCTGAAGGAGGGAGATAGAAATACGAAGTACTTTCACTCTTGTGTGAATTGGCGA AGGCGAACAAATAACTTGGTAGGTCTCTATGTAGATGGCAGGTGGGAGGAGAATCTGGAGATTATAAGGAGGGAGGTGAA GTCCTCCTTTGAGAATCAGTTAAGAGAAGTGGATGGTTCGGAATTGAACCTTGATGGTGTCCCTTTCAGAAGTATTTCTA GTGTTGATAATGCTCTTCTTTGTGATACTTTTGATCCGCAAGAGGTAAAGGCAGCTGTATGGGATTGTAAAGGAGATAAA AGCCTAAGACCGGATGGCTTTAATTTTAAGTTTACTAAAGAGTTCTCGCATTTTCTGGCTGATGATATTTAGAGAGTCCT TGATGAATTCCATGATAATGGCACTTGGCCGAAAGGAATCAACTCTTCATTCATTGCATTGATACCTAAATGCGATTCTC CCCAGTGCCTAAATGATTATAGGCCTATATCTCTGGTTGAGTGCATGTATAAAATTGTGGCCAAGATTCTTGCAAATCGG CTCAAGAAGGTGCTCCATAAGGTGATTGGGGATGAACAATCTATTCCTAGAGGGGCTAACTATGATGGATAACATTGTTG TGGCAAATGAGATGATCCATGATGCAAAATGTAGGAAGAAGCAATCAATAATCTTTAAGGTGGATTTTGAAAAGGCGTAT AACTCAGTTAGATGGATTTTTCTCTTCTACATGATAAGGCGAATTTTATGACCAATGGATTTGATGGATCGAAGGATGTT TGAGAACAGCACGGGTGCCAGTGCTTGTTAATGGTAGTCCGGAGGAGGAGTTTAAAATGGGGAGAGGCTTGCGCCAAGGA GATCCCTTGGCCCCACTGTTATTTTTTATAGTAGCTGAGGGTCTAAAGATGTTCAAGCAAGCGGTGAGTTCAGAAAAATA CGAAGGGCATAATTTTTCAACAGAAAAAGAGGTGACAGTATCCATGCTACAATTTGCGGATGATACTCTCTTTCTTGGAA AAGCGTCGATGCAAAACATGTTAACCATAAAGAGCGCCTTGCGGTGCTTTGAGATGGTGTCGGGACTCAAAATCAACTTC CACAAAAGAAAGTTGGCAGGGATTGGAATTGAGGGGAGGGAAACTTGGCGGCTAGCAAACCCACTCAATTGTAAATTGAT GGGAACACCGTTTACTTATCTTGGTCTACCAGTAAGGGGAACCCAAGGAGGCTTTCTTTTTGGAATGGAGAGAGAAAACT CTATCCTTCGGGGGCGCTTAACCATGATCGCTAGTGTGCTACAATCTCTACCTCTCTTTTACCTCTCTTTCTACAAGATG CATCAGGGTGCTAAGAGAGTGTAAGAAGATTATGTGGAATTTCTTGTGGGGAGGGACGAAGGGGGCCAACAAAATAGCAT GGGTCAAATGGGAAACGGTATGCAAGCCGAAGGAGCTAGGAGTATTGGGTTTAAGAGATTGGATGTGTTTAACAAAGCTC TCCTAGGAAAGTGGCGTTGGAGGCTCCTTGTTGACCGCCACAGTATATGGGGACAAGTAGTGCGGGCAAAGTATAAGGTA CCAACACAGTTTGACCATGTGGTAGAGGATGGGAATTGTTCTAGTTGGTGGAGATATATTTTACGTACATGCTATAAGGG AGTGCTGGTTCGATCATGCTTTGAGAAGGATTTATGTGATGGCAGTGGGACTCGTTTTTGGCAAGATAGATAGGCGGGAA AGTAAAGTCTCTGTGAACGCTTTAGCCACCTTTTCATCTTATATGTACAACAATTCTCAAATGTTGCTGAGATGGGTAAT TGGGCCAAGGAGTATGGAGGTGGAACTTACTTTGGCGAAGAAGGATCTTGCCTCGAGAAGAGGAGAAAGTGGAAGAACCG TTATCAGTTTTACAGCAAGTTCACTTGGCTGAAGGCAAGGTAGATAGATCGGGAACTTTTATTGTGAAATCTGCTAGGTC TTTTATGCAGGGACTTGAAATGGAGGAACCAAACATGGCTTTTGAGCAGTTATGGAAAGGGCTTGCGCCCTCAAATATCT TAGATTTTGCATGGAAGGTTATGTGGAAGAGGGTACAAACGAAAGATAACATGACTAGGAGAGGTGCAATTTTATCTGAA GTGTCCTTGAACTTTGTTCTTTGTGAAAATGCAGAGGAAACCGTTGAGCACCTCTTCTTTTACTGCCATTTTTCTTCAAA GGTATGGGACTATTGCCATAGGTGGTTAAATATGTCTACTGCACTCCCTCAAGGTTTCCAAGAGCACTTCTTGCAACATG GTGGGGAACTGAAAAATGCAGATCAGTAACGAGGAGCGAAATCTATTTGTTTGGCAGTCCTTTGGTCTCTCTGGGTTTGA AGGAATAAAGTTATATTCAAGGATGAGGAGAAGGACGCAACGATGGTGTGGGAACTAGCACACTTGAGAGCATGGAATTG GCTTCGCTCTAGAAGTCAAAGGTTTTATGCTTCCATGAGTGATTGGCTTACCAAAAAAAACAAATGGAAAATATTTGGTG AGAATGGGCATCCTTAATTTCTTTACCACATTTTGTTTGAATTTGGGATGCCTTCATGATAATAATGGAAAATATGTTTA CAAGTTTGCAAGGATAAAGGTAGACAAAGTTTTTGTGGAAGTGGACTTGGAAGATGATTGTGGTAAATTTTTTGTTTCTT TGTTTGAATGATGCATTTCCTCTAATTAAAGTTTGTGATTTGTTCGAATCAGACGAAAAGAAAAATATAGGCTTGTTTTA ATATGTAGTGAACCAATATGAAAAGAAGATCAAAGTGTTTTTAATGGTGTTTGGAAAAAGGTAGCAATCAAGTGAAGTAG TATTATGTTTGAGCTTAAAATTGATATTGAAGTTAAATGAGGATTAAATGATTGTACGATAAAGATGATCCCCGATCTTA AGAACAAAAACATGCATGTTGATGTTTATATTTATAACTTCAAGGAAGAATTAAAGATCAAGTTGATGAGTTTATTAGAG AGACGAAAAAGAAGAAAAAAGGAAAGTAAGGGAATTTAATTAAACTAGCGTTTATTAAGTGATTTTGCACAAAAAATGAA AAAAAATAATATCCTTGTATTTAAAAACACCCTGGGGTTATGTCGAAAATGCAGA
CDS sequence (LotjaGi1g1v0343500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGGACTTGAAATGGAGGAACCAAACATGGCTTTTGAGCAGTTATGGAAAGGGCTTGCGCCCTCAAATATCTTAGA TTTTGCATGGAAGGTTATGTGGAAGAGGGTACAAACGAAAGATAACATGACTAGGAGAGGTGCAATTTTATCTGAAGTGT CCTTGAACTTTGTTCTTTGTGAAAATGCAGAGGAAACCGTTGAGCACCTCTTCTTTTACTGCCATTTTTCTTCAAAGGTA TGGGACTATTGCCATAGGTGGTTAAATATGTCTACTGCACTCCCTCAAGGTTTCCAAGAGCACTTCTTGCAACATGGTGG GGAACTGAAAAATGCAGATCAGTAA
Protein sequence (LotjaGi1g1v0343500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGLEMEEPNMAFEQLWKGLAPSNILDFAWKVMWKRVQTKDNMTRRGAILSEVSLNFVLCENAEETVEHLFFYCHFSSKV WDYCHRWLNMSTALPQGFQEHFLQHGGELKNADQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 8 | 81 | 74 | 2.1E-15 | ||
| PANTHER | 9 | 99 | 91 | 2.3E-19 | – | |
| PANTHER | 9 | 99 | 91 | 2.3E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0343500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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