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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0343800 |
| Transcript ID | LotjaGi1g1v0343800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT1G78750.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750; TrEMBL-Plants: tr|G7JSX5|G7JSX5_MEDTR F-box/RNI superfamily protein; Found in the gene: LotjaGi1g1v0343800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80821279..80824415) extracted from Lotus japonicus Gifu genome v1.2.
CGCTTTCCTATTCATCCCTGTGTTTCTCGTTAGGGTTCTACTGTAGACTATACTGTTCACGAGCTCCTTCTCCGCCATAG GGTTTACGCGAGAGGTATTTCTCATTCCCCTATTGAATTTCAAGTTCCACTTTTCCTGAATTATCATCCTCTATACTTTG TCTCTCTGTAGTGTGTGTTCCTTACTTAATTTAGTTTAGATTGCAGAAAAATCATTCAATTTCTTTGCCTTTTTTATGCT TAGGTAGGTAGTTATCTGAATGTCTAATTCAATGGATGAGATGTTGATTCCGCCGAATGCGAAGAGAGGAAGAAACAGTG AGACTGAGACTGAAATTGAAGACAACAAAGACAGGCTCAGTGACTTGCATGATTGCATTCTCCTTCACATTTTGTCATTT CTGAGCGCCAAATACGCAGTTCGAACATGCATGTTATCCAAAAGATGGAAGGATCTCTGGAAACGCCTTCCGAACCTTAT TTTACTCTCCTCAGATTTTGACACATTCAAGTTTTTCACCAAATTTGTGTCTACCATTTTGACCCGTCGTGATGGCAAAA CTGCGCTGCACACTCTCGAATTTGAGCGTGTTGGTTCCATCCAGTCTCCCCTCATCAAAAGAATAGTAAACTATGCTGTT TCCCGCAATGTCCAGCGATTAGGAATTGATGTCGAATTTGACATGCAACACCTGCTACCTTGCATTTTCACATGCCATAC TTTAACATCTCTTAAACTCATTGTGTACCCGAAAGGTTACAGTAGGGGTAGCACTTTATTGCCTGAGTCTTTGAATTTGC CAGCTTTAACCACCTTGCATCTGGGGAAGTTCACCTTTTGCTCAAGCGGTAACAACCGTGCCGACCCATTTTCAGCATTT AAGAGGTTGAAGAGTTTGATCATTGACCGTTGCGATCTAAAGGATGCAGAAACCCTCTACATATCAAGCTTGACGCTTGT CAGTTTAGCTTTGCTTGATCCTCCCTCTCAGACCTTCTACAAAGTTGAGCTGTCCACACCATGTCTTCATAGGCTTGCTT GCACGGGTTCTCCTTCTCTGTACCTCGATGATAGCGGTCTTTCTTCTGTTCAGGAAGTAGATATTGATATAGATATGTAC TCATATTCCCCTGTACCTCCTTTGATCCTACTTTGCTGGCTTCAAGGTTTTGTTAATGTAAGATCATTGACTGTTTCTAC AAACACTCTTCAGGTACCTTGGCATGCTTTAAGGCTTTGTTTTTAATTTATACTTAAGATCCTTCTCAATTTCTAATTTT TGTTAAAAATCAATTGGTTTGCATTATCTAATTCACCCTCATTTCTTAGGTTCTTTCCTTAGTTCCTGGTTTATTAAAGT ATAAGCTCCCTTCATTGACTAACATGAAGAGATTGAAAATAAAAAGGGAACCTCTTTCAGAAGACCTGAAAATGATAAAG ATAGTTATGATAAACAGAGAGAGAGAAGCCACTGAGTCGCGGAAAGAAGCTGCCAAGTTACGGAAAGAAGCTGACTTGTT ATGGAAAAACAGACGGACGCTAACTGCACCTTTGCCTGATGGAATAGTGGACTTTTTGATTCAAAATTCACCATCAGCAG AAGTTGAAATCATAGATTGCTTATGTTGAAATTGGCATTCAACTTCTTGAAGAAGGTAACATGGTTTGGTTTTTGCTTCG TTCCCTTTATTGTTAGGTCTTTTTGCTTAGAACTGGTTATGAATGGATAATTACGAGACCCTTGTGTAGAGAAACAAATT TTATGTGTAATAACATGATTGCATACTATATCAGCTTTAGTTCATGCTCTATAGCTAGGATGGAGAGTGGAGTTATGCAG TTGCTTTTGTTAAATGAAAGAACGTTGTTGGTGCTTTTTGTTAAATCCTTGTCTTGAGGTTAATGAAGGTTGATGAGAAC AATGAAAGAACTAATTCTTAGATGTTGAAGAAACAAGTAGAATCTGAGTGCATTTGATTTGCTAAAAATGAAGTGCTAGA TAGCACGTAAATACTTGATTCATGTTTGATTTTAAAAACGATCATGTGGCGAGATAAAGTAGAAGGTGAAGGACTGGACT AAATTCTTAAAATTTGTTACTTAGTATAAATATTCAACTTTTTCTTCAACTTCTTGACAACTCTCTTCGTCAAGTCCACT TCTCCCTCTCAGCCTTCAGCAGTCACCATTTCTTTCCATTTTATTCCTAAAAATACTTGTGTGGTGCATCAACCACCATC ACAATAGATACAATCAAAGGTTGTATTGTGACTCAGCTACTTGTGTTGTGTTGTTCTACTCGTGTATGTCTTAACAAGCA TCAAATGCTCCCTTTGTGTAGAATAGAATTGATACTCGAATCTACATGAAAGTAAATTACATAGAAATTATTTATTTTGG TATGATATGATGGAACAACCAAATCATTTATTTCAACATCTGTTATTGTTGAAGAAAAACAATAAATACAACAATGGATC AGGTTTATTTAATTCTTTATATTATTTTGAAGGAAGAGTTACATAACAACCTGTCATTTGCTTTCCTTTTGTTTCCTTCT ACAAATGAGAATCAAACATTGTACTAACTTTAAAACCAAAATTTGATTGGTCTTTAGGCTGCATATACAGATGATAAATA AAACTCATTCAGCATGCGATGTCATTGTTTTAATAAGAGAAATAGAGGGATTCATCCATGCATCCATTACTGATATGTCT ACCACTCCAAATAAATCTTGATGCAATCATATGGATGTGAGAATAGAATAACATGCCAAGTTTCAATTTGATCCATCCTA GTGTTGTTTGGGTCGTGATCAAGTTCTGTATCTGAGTGCTTTAATGTATTCGTTCAGACCTTTGTTGTTGAAATTTTCAG CATTAAAATTTCCTTTGAAGATTCGGATAACTTAACCAAGTCCACATCTACTCAAGCATTATCTGCATCATCACTTTCCA ATCCCTTCTATAGGTGCTCTCACAAGCATTATCTTCACATTGCATGTTACAAGGCTTTATTTTTTGAGATGTTGCTTTCA TTCCATTTTTTATCAAAAAAGAAATTCGCTTGCAGTAAAACGATCCGAACACATCCTCACTGCTTAGGCTCTCCTCTAAG GGTCTGTTTGGTTTGCC
CDS sequence (LotjaGi1g1v0343800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAATTCAATGGATGAGATGTTGATTCCGCCGAATGCGAAGAGAGGAAGAAACAGTGAGACTGAGACTGAAATTGA AGACAACAAAGACAGGCTCAGTGACTTGCATGATTGCATTCTCCTTCACATTTTGTCATTTCTGAGCGCCAAATACGCAG TTCGAACATGCATGTTATCCAAAAGATGGAAGGATCTCTGGAAACGCCTTCCGAACCTTATTTTACTCTCCTCAGATTTT GACACATTCAAGTTTTTCACCAAATTTGTGTCTACCATTTTGACCCGTCGTGATGGCAAAACTGCGCTGCACACTCTCGA ATTTGAGCGTGTTGGTTCCATCCAGTCTCCCCTCATCAAAAGAATAGTAAACTATGCTGTTTCCCGCAATGTCCAGCGAT TAGGAATTGATGTCGAATTTGACATGCAACACCTGCTACCTTGCATTTTCACATGCCATACTTTAACATCTCTTAAACTC ATTGTGTACCCGAAAGGTTACAGTAGGGGTAGCACTTTATTGCCTGAGTCTTTGAATTTGCCAGCTTTAACCACCTTGCA TCTGGGGAAGTTCACCTTTTGCTCAAGCGGTAACAACCGTGCCGACCCATTTTCAGCATTTAAGAGGTTGAAGAGTTTGA TCATTGACCGTTGCGATCTAAAGGATGCAGAAACCCTCTACATATCAAGCTTGACGCTTGTCAGTTTAGCTTTGCTTGAT CCTCCCTCTCAGACCTTCTACAAAGTTGAGCTGTCCACACCATGTCTTCATAGGCTTGCTTGCACGGGTTCTCCTTCTCT GTACCTCGATGATAGCGGTCTTTCTTCTGTTCAGGAAGTAGATATTGATATAGATATGTACTCATATTCCCCTGTACCTC CTTTGATCCTACTTTGCTGGCTTCAAGGTTTTGTTAATGTAAGATCATTGACTGTTTCTACAAACACTCTTCAGGTACCT TGGCATGCTTTAAGGCTTTGTTTTTAA
Protein sequence (LotjaGi1g1v0343800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNSMDEMLIPPNAKRGRNSETETEIEDNKDRLSDLHDCILLHILSFLSAKYAVRTCMLSKRWKDLWKRLPNLILLSSDF DTFKFFTKFVSTILTRRDGKTALHTLEFERVGSIQSPLIKRIVNYAVSRNVQRLGIDVEFDMQHLLPCIFTCHTLTSLKL IVYPKGYSRGSTLLPESLNLPALTTLHLGKFTFCSSGNNRADPFSAFKRLKSLIIDRCDLKDAETLYISSLTLVSLALLD PPSQTFYKVELSTPCLHRLACTGSPSLYLDDSGLSSVQEVDIDIDMYSYSPVPPLILLCWLQGFVNVRSLTVSTNTLQVP WHALRLCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| SUPERFAMILY | 22 | 79 | 58 | 5.36E-11 | ||
| PANTHER | 28 | 319 | 292 | 3.4E-71 | – | |
| PANTHER | 28 | 319 | 292 | 3.4E-71 | – | |
| Gene3D | 28 | 325 | 298 | 4.0E-18 | ||
| Pfam | 32 | 72 | 41 | 4.1E-6 | ||
| SUPERFAMILY | 140 | 265 | 126 | 2.28E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0343800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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