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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0343900 |
| Transcript ID | LotjaGi1g1v0343900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT5G22720.1 F-box/FBD/LRR protein; Swiss-Prot: sp|Q9FNI9|FBD14_ARATH Putative FBD-associated F-box protein At5g22720; TrEMBL-Plants: tr|G7JSX5|G7JSX5_MEDTR F-box/RNI superfamily protein; Found in the gene: LotjaGi1g1v0343900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80841540..80844781) extracted from Lotus japonicus Gifu genome v1.2.
TCCTAATTGTGTTATAAACCTAATTAAATCAACTAAATTAATTTCCCCAAAGTTATCTCAATTCACCCCAACTAACCCAA ATCCCCAATTCAGACAAAACAAATTAGGGTTCATAACTTCTTCCCCTCTTATTCTTCTTCCTCCTCTGGTTCATCATGTT CTGTTACTAGAAAGGGGAGAAGAAAGAAAGAAAAACGACAAGGAGAAGAGGCTTGAGTTCGGTTCTGAATATCTGGGTTT GGATCCGAAATTTTGGGTTTGGATCTAGGTTTATCATAGGAGAAGGAGAAGAAGGTGAGAGAGAGGAACAGAGAACGAGA TTAAAGATTGAAGAAGATGAAGCAGAAATTTGGGATGAATAGAAGTTACTGATGGTAGTGGGTGTGGATCTAGGGCTCGC GAACGAGAATCTTGGCCACCACCACCACTCACGGCTTGGCCACCGCCACTAATTCTGAGGGCTGTCTATGATTACCCATT TGAACCTTGTGTGTTTTCTTCCTCACCCACTGGTGTTTCGATTGGAGAGGTGCCTTGCTTTTTGGAAGGTGGGTGTGTGC TGCGTGTGTGGGATGGGGTAGCAGAAGCATTTTGTTCTAGTGCAGGGTCATACCAAGCTATTTGAAAAGAACAATTTAAA GGAGGTTTGTGTAAGCTGCCCACGCATCTCATGCTGCCCACCACCACTTCTGGGTCTCAATCTCCTGGTTCTCAATATTT GATATGGAACTATTTTGGTAACTGGAAATCTATTATAAGTGGTCGTAATAGTAAAATCCAATGATTCTTATATTTTTTAA ACTTGTTTGAAGAAGATTCATGTTAATGAAGAAGATATGAATTGGGGATTTGGGTGAATTGAGATAAGCTTGGGGGGGTG AAATTAATTTAGTTGATTTAGTTAGGGTTATAACATAATTAGCAATATGTTAATTAAGTTAAAAAATCTGACTTGTAATA TTTTTTTATTTTTTTTTTAATCCACGTCACCTCATTAAACTCCGTAAGCATGCCATTTAAGCACTCGCTGGAGCTCCTCC GGCGAGGATCCGCTCCAAAAACTTTTCAAAGATGATGACTATTTACAATAATTTCTCATTCCCCGAATGAATTTCATCTT GCTGTATAATTGCTGCTCTGTCTCTCTAGTTTGTGTTCCTTGATTTAGATTGCAGAAAAATCATTCTATTTCTTTGGCTT TGTATGCTTAGGTAGGTAGTTATCTGAATGTCTAATTCAATGGATGAGATGTTGATTCCGCCGAATGCCAAGAGAGGAAG AAACAGTGAGAGTGAGACTGAAATTGAAGACAACAAAGACAGGCTCAGTGACTTGCCAGATGGTGTTCTCCTTCACATTT TGTCATTTCTGAAAGCCAAATATGCAGTTCAAACATGCATATTATCCACAAGATGGAAGGATCTTTGGAAACGCCTTCCA GACCTTACTTTACTCTCCTCAGATTTTTCAAGCTTAATCTTTTTCACCAAATTTGTGTCCACCATTTTGACCCGTCGTGA TGGCTCAACTGCGCTGCACGGTCTAGATTTTGAGCGTGTTGGTACCATCCAGCCTCCCCTCATCAAAAGAATCGTAGACT ACGCGGTTTCACGCAATGTCCAACGATTAGGAATCTATGTAGAATGTGACATGCGGCACCTGCTCCCTTGCATTTTCACA TGCCATACTTTAACATCTCTTAAGCTCGTAGTTTGCCCTAAAGGTTGCAGTAGTGGTAGCACTTTATTGCCTGAATCTCT GAATTTGCCAGCACTAACCACCTTGCATCTGGGGAATTTCATCTTTTGCTCAAACGGCAACGACCACGCCGACCCATTTT CTGAGTTTAACAGATTGAATAGTTTGATCATTGATTATTGTAAGCTAAAGGATGCACGGACTCTGCATATCAAGCATGAC GCTCGTCAATTTAACTCTGCGTCCTAGTGGGGACTACTCTATTGAGCTATCCACACCATGTCTTTATAGGTTCACTTGTA CAGATTTTCCTGATAACTACCTCTGTGGGAGCGGTCTTTCTTCTGTTAAGGAAGTAAATCTTTATGCAGATAGGTGCTTA TATTTCCGTGAGCCTCCTCAGGTTCTACTTAGCTGGCTGCGAGGTCTTGTTAATATAAGATCATTGACGGTTTCTTCAAA TACTCTCCAGGTACCGTGGGATGTTTTAAGGCTTTGTTTTTACTTTCTTACTAAAGATGTTTTCTTACATTCAATTTTTT GTTAAAATTCAATTGTCTTGTATTATCTAGGCTAAAAAGCATTTTTGGCCCCTGATGTTTCAAGTTTGTGCAAGTTCTGC CCCTATCTATTTTTGTTGATGTTTCTACCCCTCATGTTTTCAAACAGTGCACCGTCTACCCCTCCGTCAGGGGTAGACGG TGCACTGTTTGAAAACATGAGGGGTAGACAATGCACTGTTTGAAAACATGAGGGGTAGAAACATCGACAAAAATAGAGTA GGGGCAGAATTTGCACAAAGTTGAAACATCAGGGGCCAAAAGTGCTTTTTAGCCTATTATCTAATTCTCCCTCACTGCTT AGGTTCTTTTATTAGTTCCTGATTTATTGAAGATTAAGCTCCCTTCATTGGCTAACTTGAAGAGATTGAAAATAAAACGG GAACTCCTTCCAGAATTGATGAAAAGGAGAATGAGAGATGCGATGTTAGAGAAAGCAGCTACTGAGACACGGAAAGAAGC TGCCAAGTTACGGAAAGAAGCTGCCATATTTTGGAAAACAAGACGGGAGCGAAAGACACCTTTACTTGATGGAATAGTGA ACTTTTTGATTCAAAACTCGCCGTCAGCAGAAGTTAAAATCATAGATCGCTTATGATGAAATTGACAATCAACTTTTTGA AGAAGGTAAGATGATTGTATACTGTCTCAGCTTGAGTTCACGCTGTTTAGCTAGGATGGGGAATGGAGTTATGCAGCTGC TGTGTTAAATGAAAGAACGTTATTGGTGTTTTGTGTTAAATCCTTGTCTTGACTCTTGAGGTTTATGAAGGTTGATGAGA ACAATGAAAGAACCAATTCTTAGATGTTGAAGAAAGAAGTAGAATCTGCGTGCATTTAATTTGCTCAACATGAAGTGCTA GATGGCACATAAATACCTGGTTCATGTTTGATTTTAAGAATGATCATGTGACTAGATAAAATTGAAGGTGAAGGATAGGA CAATTTTTTTTTTTACTTATTTAACCATGCACTGCATTCAAC
CDS sequence (LotjaGi1g1v0343900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAATTCAATGGATGAGATGTTGATTCCGCCGAATGCCAAGAGAGGAAGAAACAGTGAGAGTGAGACTGAAATTGA AGACAACAAAGACAGGCTCAGTGACTTGCCAGATGGTGTTCTCCTTCACATTTTGTCATTTCTGAAAGCCAAATATGCAG TTCAAACATGCATATTATCCACAAGATGGAAGGATCTTTGGAAACGCCTTCCAGACCTTACTTTACTCTCCTCAGATTTT TCAAGCTTAATCTTTTTCACCAAATTTGTGTCCACCATTTTGACCCGTCGTGATGGCTCAACTGCGCTGCACGGTCTAGA TTTTGAGCGTGTTGGTACCATCCAGCCTCCCCTCATCAAAAGAATCGTAGACTACGCGGTTTCACGCAATGTCCAACGAT TAGGAATCTATGTAGAATGTGACATGCGGCACCTGCTCCCTTGCATTTTCACATGCCATACTTTAACATCTCTTAAGCTC GTAGTTTGCCCTAAAGGTTGCAGTAGTGGTAGCACTTTATTGCCTGAATCTCTGAATTTGCCAGCACTAACCACCTTGCA TCTGGGGAATTTCATCTTTTGCTCAAACGGCAACGACCACGCCGACCCATTTTCTGAGTTTAACAGATTGAATAGTTTGA TCATTGATTATTGTAAGCTAAAGGATGCACGGACTCTGCATATCAAGCATGACGCTCGTCAATTTAACTCTGCGTCCTAG
Protein sequence (LotjaGi1g1v0343900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNSMDEMLIPPNAKRGRNSESETEIEDNKDRLSDLPDGVLLHILSFLKAKYAVQTCILSTRWKDLWKRLPDLTLLSSDF SSLIFFTKFVSTILTRRDGSTALHGLDFERVGTIQPPLIKRIVDYAVSRNVQRLGIYVECDMRHLLPCIFTCHTLTSLKL VVCPKGCSSGSTLLPESLNLPALTTLHLGNFIFCSNGNDHADPFSEFNRLNSLIIDYCKLKDARTLHIKHDARQFNSAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 28 | 229 | 202 | 2.3E-60 | – | |
| PANTHER | 28 | 229 | 202 | 2.3E-60 | – | |
| Gene3D | 28 | 234 | 207 | 6.5E-17 | ||
| ProSiteProfiles | 30 | 83 | 54 | 8.782 | ||
| SUPERFAMILY | 30 | 81 | 52 | 2.75E-11 | ||
| Pfam | 32 | 70 | 39 | 1.9E-6 | ||
| SUPERFAMILY | 129 | 226 | 98 | 1.94E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0343900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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