Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0344600 |
Transcript ID | LotjaGi1g1v0344600.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein, putative; TAIR: AT5G22720.1 F-box/FBD/LRR protein; Swiss-Prot: sp|Q9FNI9|FBD14_ARATH Putative FBD-associated F-box protein At5g22720; TrEMBL-Plants: tr|A0A072UNA8|A0A072UNA8_MEDTR F-box/RNI superfamily protein; Found in the gene: LotjaGi1g1v0344600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81091796..81097685) extracted from Lotus japonicus Gifu genome v1.2.
TCAGCTTATGCTCATGTTGTTTTCAGATCGGGTATTTCAGATTTTTGAGGGTTCGGCGCCCACATCGGGTTTTAAATTTG AGTTTGGGTAACCCGAAACCCAAGGGTTTGGGTTTGGGTTTAATATTTTGCACCTATATTGGGTTTGCGTTTGGGTTTAG GTGTTAAGTTCGGGTTCAGGGGAATTGTCAAACAGTTGAGATTCATTCATTTCAATCTCTCGACTCCTTACTCCTTCGTT TCCACAGCGCGAACAAAGTAGAGCCGCTCAATCTAGAGGTATTTCTCCATTCCCGAATGAATTTCATTTTCCATTTTTCC TGTATGATTGATCATGCTTGCTGATACTTATTAGGGTTCTTTCTAGGTTTTTTCCCCCAATGCAATCGAACATGACTTTG CTTAGTTTTGAAAATCCACTCTATAATTGCATCTCTGTTACTTTAGATTGCAGAAGAATCATTCTATATATTTTTTTCCT TTACATGCATAGGCACTTATCTGAATGTCTGATTCAACGGTTGAGATGTTGATTCCGCCGAAGGCGAAGCCAGAAATGCC CAGCCAGAGTGAAAATGAAGATAGTACTGATTCAACAGTTGAGAAGGCAAAGCGAGGAAGACATAGTGAAGGTGAAAGTG AGAGTGAGAGTAAAGTGAACAATGACAGGCTTAGTGATTTGCCCGATTGCGTTCTGCTTCACATTTTGTCATTTGTGAAA GCCAGGAATGCAGTTCAAACTTGCATATTATCCACAAGATGGAAGGATCTATGGAAAAGTCTTCCTTCGCTCATTTTACT TTCCCCAGACTTTTCGACATTGAAGATTTTCACCAAATTCGTGTCTAAGCTTTTGGAACTTCGTGATGGCTCACTCCCGC TGCACAGCTTTGATTTTGAGCGTCATGGTTCTATTGAGTATATTGTCCACAGACGGGTAGTAGACTATGCTTTGTCACAT AATGTTCAGCGATTGGCAATGACTGTGGAATATGACTATTGTCACGTCGCTCGCATTTTTTCATGCCAGTCTTTAACATC TCTTAAGCTTTCCGTTCACCCTAAGCAATATAATACTTTTAGCACTTCATTTCCAATATCTTCATGTCTGAATTTGCCAG CATTGACCAGCTTGCATCTGGTTGGTTTCACCTTCCACGGGAGTAACAATGGCCAAGTTGAGCCCTTTTCGGCCTTTAAG AAGTTGCATAGTTTGATCATTCGCAATTGTACCGTTAAGAATGCACAAACCTTCTGCATATCAAGTACAACACTTGTCGA TGTAACTATGCGTACTCCTTTTGGGGACTTTCACAAAATTGAGCTCTCTGCACCAAGTCTTCAAAGGTTTGATTTTACTG GCTCCTCTCCCTATAAGCGGCTTTGTGGGAGCAGTCTTTCTTCTGTTAAAGAATTAAGTATCGATGCATATATGGGCTCA TATTCCCCAGAGCCTCCTTTGGTTCTACTCAGCTGGCTGGAAGAGCTTACTAATATCAAATCATTGACAGTCTCTACAAA TACTCTTCAGGTGCCTTGGCAGGCTTTGGGACTTTATTTTTACTTACTTCTTAAGATGCTTTTTAATTTCAAATTTTGTT AAATATCAGTCTACTTGCGTTTTATCGTTCCTAATTCACCCTCATTTCTCATTGCTTAGGTTCTCTTCTTAATTCCTGAC TTAGTGAACCGTAAGCTCCCATTCTTAAGTAACCTGAAGTCATTGAAAGTTAAAGTGCAGCGACTTTCATATATTCTTAG AATGACAATGATAGCTGCGAAGATACAGAAAGCCACTACTGCGTCACGGAGAGAAGCTGCCAGGTTACGGAAAGAAGCTA AATACTTAGGGAAAACAATATATGAGCGTGCACCGATACCTGCTGGAATAGTGGACTTTTTGCTTCAAAACTCACCAACA GCAAAAGTTGAGACCAAAATGTGCTAAAGGTAAAATTGGCATTCAACTTTTTGAAAAGAGATTCTTATAATTTGTTTTGT TTTTCCTTCCTTCCCTATTGTTCTTTGCTCAGTCTCTCTGCTTTTAAATTATTGATGGATAAATTATGAATCCCTTGGGT TGAGAAACAAATTGTACATGTGCAATAATGTGATTGTTTGTATCCTTCTCACAACAGTAAGTCGGTTCTCTTTTGCTAGG ATGGGGTAATGTCATTGCTTGTATTGAATGAAAGGAAGTGGCTGGTGGTTTGGGAAAAATCTCTATTTTGACGTTAATGG ATGTTGATCAGAAAAAAAGAATAAAGAGTTTTTAGATGTTGAAGAAATGTGAAAAGTAGAATCTTTTGGTGCATAAAATT TGATTGAATACAGAGTGCTAGTTATCAGAAAAATACTTCTTTCACGTTTGATTTTGAAAATGGTAGCAGGACAATACAAA ACTAAACATGCAGGACAGCACACTAGTCTTAAAATATGTCGCTCAGGAAATCATGGGCAACTTTTTGTCCCACACAGAAC ATCATCGAAAAAGAAAAATGTTTGCAAAATTATTAATGTTATGCACCAACCACCTACACATTTGATAGAACTAAAAGTTG TGCAGTGACTTAGTTAATTTAATTATATTGTGCTGTTCTGTGTATGTCATACCTTAAAAACACACCCTTTGTGCATTGGT CAGTGCATCAAATGCATGATAGCTTAACAACCAAATACATATTTGGTTGGGTGCATCTTGATCACATGTAGTATTCTTTC TAGTTGATTATAAAATTTGCGTAGTCAATAAATCATTCTTTACAAGCAGGATTGTTGATGGAAAATGGGAAGCAATGTAA ACTTGAAATTGGCGAAGAAGTCAAAGTTTTAAAGGGCCTTTGTTTGCATATTGGAAGTTGCAGTGCTGTTTGTGTCTTTG TTAGCAAGTCATTCTTTTTAAAATAAGGCTATAGTTACTTATGTGTTTATTCTTAAAAAAAAAGTTAGTTATGTGTTTCC TTTGTTTTAGTTGCGTTATAATTTTGCATATCCTACCGTCTGTTTCGAATTTGGTTAGATTAAGGATGATCACCCATTCA AACATCCGGAGTACTCAATATTTTGTTTTCGGAATATCAGAAGATGAATTTTGGTGCAAATGTTCAGTTGCATGTATTTA GTTATTGACTTGTTGGTGATATGGTTAAGTGATGATAACTTGTGATCTTTGGTGTGAAGGGAATACTGGAGTTATTTTTT GGCTGTTTGGCTTTATTTTCAAAATGAAAATGCTAGAGTTTTGCATCTCAAATTTCAGATCAAATCTTGATTTTGTGGGC ATGCAAACATATTTGGGTTAAAAACTATAATCGTCCTGAACTTTGAGCGAGTTTTGAAAACCGTCCCTCGCCGGAAAATT ATCTGAAAACCATCCTTAGACTATTGAAAACAATTTCGACCCGTCCCTCCGGCCACCATAGGTCCGACCAACGTGCTTAC GTGGCTGTCCACGTCAATTAATGAGCCTACGTGTAATTTTTTTATTATTTAAAATTAAAAAAATTCCTAATTATTTTATT TAACCCAATTATCCTAAATTAACCCTAAACCCCCTTTGAACCCAGAAATCTTGTAAGGTTCCATCTTTGAACATTCTGCA TTGAACATTGCTCTTGAAACAGAGTAAAACAGAGAAGGAAAACACTGCATCAGATTCTGGGGTGGGGTTGGAGAGGGAAG AGAACAAGAAACCACTGCCACCACCCCCAACCTCACGCACCACCACGCCCACCCACCACCACGGCACAAACCCATCACCC CCAACCTCACCAACCCAGAAACCCACCCACCACCAGAGCAAAAATCAACCACCCTCACTCCCACCACCCTCAACCTCACC ACGGCACAAACCCACCACCCCCAACCTCACATACCCAGAAACCCATACCCACCACACCCACCCACCACCCCCAACCTCAC CAACCCAGAAACCCATACCTACCACCAGAGCAGAAATCGACCACCCTTACTCCCACCACCCTCACCCCCATCGAACAACC CCCACCACCAGGAAACTCAAACCCAACCCCACAGATCTGTCAAGCAAACCAGAAAAAAAAAGAGAAGAAGAAGAAACTAA CACAACAACAACAACATGCAAATGGAAAATCAAAGTTTAATCGTTTAGATCTGGCCGTTTGGGAAAGGATTTAGGGTTCG ATTTGTTTGGGAAGGGATTTAAGGTTTGATTCAGGAGATGAAATGGGATTTAGGGTTTTTTTTATGGAAGGGAATGAAAA GGGGGTGAGGAGAGCAGCAAGAAGAAGAAGAAGAAATCATAAAAAATTCAAAATTTTAATTTTTTAAATGAATAGGAAAT GAGTAGTTTTAAATAGGAATTTTTTAATTAGATTAATTTCTAATTAATTTTTTTTTAATTTTAAATAATAAAAAAATTAC ACATAGGCTCATTAACTGACGTGGAATGCCACATAAGCAGCTTGCCGGAGCTATGGTGGTCGGAGGGACAGGTCCAATTT GTTTTTGAAAGTCTGAGGATGGTTTTCAGATAATTTTCCGGCGAGAGACGGTTTTCAAAACTCGCTCAAAGTTCAGGGAC GGTTATAGTTTTTAACCCAACATATTTTATTGCAAATTGATTGATTGTCAAATACAACCATCCTTTTCTTCATCTTTCAC GCCCTCTGTTTGAACTTTCTAAATCCTTTTCTTCATTTGATCCCCAGGACCCTCTGGTTGAACTTTCTAATTCTTCAGAC ACAGACATTGACATTCCTGGAAACTTTGATTAGAAGGTACCAAGAGATTAATCACCTCGGGGATTTTATACAGTCCCTCT GTAATATACTGTCCATGTACTAATGAGATGCAACCTACAAGCAGGGATAGGAGACAGTTAAGAAAATGTTGGTTATGACT GAATTTAACACACAAATGGAATGACGATTACTGACGAGCAAGTGTAGAGAAGCTCTGCTGTTCCCGCCTAATAACATTAA GTTGTCTGCAATATTGGTGCTGGTATAAGTGGCAAAATATCTTTTATGCTACCTTAACCTTCCAGCCAATTAAGCTTCTT GTTCAATTTACTTGCAAATTTGCCATATTATGTGCAATTTTATGTTTGTCTAAATCTTTGCCTACCATCGAACCTCGGCA GAATGTTCATCCATGTGTAGCACATTTCTCGTTTCAATTAGGTTTGTCCATTTGTTTATGTTTAATAGAATTAGGTTTCT TATAATAAAAAGTAGAATAGAATTGCGATTGAGAGAATTAATTTGTTTGACAATTATATGGTTAAAATATGTTTAAAAAA GTGATTGATATTTAGCTAGTAGGATAGAATTACTCTTGAAGTGTAATGCATATATGATTTGTGAGTCTCCAAATCAGAAT GAATTCTATAAAATATTTACTTCGGATAAATGTATTTCATTTAAATGAAATGGTGAGAATTTGCTCAAAAGAAATAAGTG ACTCCATTGACATCAAACACCATATATTTTTTAATTTTCTTTTTACAAATAAATTAAATTTCGTTTTCTAACATTCTATA ATAAAATATAAGGTAGCGTTTATTTGGTAGACAGGTGAGAAGGGAACGGAACATGATTTATGAGTTCCGTTATGTATTTG TCATATTTTTAAGATGAATTGGAACGGAATAAAAAGTGACATGAACGAGATACTTTGGTTCCCTGGAAAAATGTGGAACA AAAGGGAACATAATGAAACACTCTCTTAAAACTTTTACACGGTCAAAAATACTCCTAATCTATATTTGAAATATTTTGTA TCTAAACCGTTTAAAATCACTTCTAAAGTGAAAAACACTTATTATATTTGTAAACAAAGTTAAATGAATTTCTGTTTTTT AAGAAAATTACTTAAAATAGAATCAATTATATTTTTAAAAGTAAAATCAC
CDS sequence (LotjaGi1g1v0344600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGATTCAACGGTTGAGATGTTGATTCCGCCGAAGGCGAAGCCAGAAATGCCCAGCCAGAGTGAAAATGAAGATAG TACTGATTCAACAGTTGAGAAGGCAAAGCGAGGAAGACATAGTGAAGGTGAAAGTGAGAGTGAGAGTAAAGTGAACAATG ACAGGCTTAGTGATTTGCCCGATTGCGTTCTGCTTCACATTTTGTCATTTGTGAAAGCCAGGAATGCAGTTCAAACTTGC ATATTATCCACAAGATGGAAGGATCTATGGAAAAGTCTTCCTTCGCTCATTTTACTTTCCCCAGACTTTTCGACATTGAA GATTTTCACCAAATTCGTGTCTAAGCTTTTGGAACTTCGTGATGGCTCACTCCCGCTGCACAGCTTTGATTTTGAGCGTC ATGGTTCTATTGAGTATATTGTCCACAGACGGGTAGTAGACTATGCTTTGTCACATAATGTTCAGCGATTGGCAATGACT GTGGAATATGACTATTGTCACGTCGCTCGCATTTTTTCATGCCAGTCTTTAACATCTCTTAAGCTTTCCGTTCACCCTAA GCAATATAATACTTTTAGCACTTCATTTCCAATATCTTCATGTCTGAATTTGCCAGCATTGACCAGCTTGCATCTGGTTG GTTTCACCTTCCACGGGAGTAACAATGGCCAAGTTGAGCCCTTTTCGGCCTTTAAGAAGTTGCATAGTTTGATCATTCGC AATTGTACCGTTAAGAATGCACAAACCTTCTGCATATCAAGTACAACACTTGTCGATGTAACTATGCGTACTCCTTTTGG GGACTTTCACAAAATTGAGCTCTCTGCACCAAGTCTTCAAAGGTTTGATTTTACTGGCTCCTCTCCCTATAAGCGGCTTT GTGGGAGCAGTCTTTCTTCTGTTAAAGAATTAAGTATCGATGCATATATGGGCTCATATTCCCCAGAGCCTCCTTTGGTT CTACTCAGCTGGCTGGAAGAGCTTACTAATATCAAATCATTGACAGTCTCTACAAATACTCTTCAGGTTCTCTTCTTAAT TCCTGACTTAGTGAACCGTAAGCTCCCATTCTTAAGTAACCTGAAGTCATTGAAAGTTAAAGTGCAGCGACTTTCATATA TTCTTAGAATGACAATGATAGCTGCGAAGATACAGAAAGCCACTACTGCGTCACGGAGAGAAGCTGCCAGGTTACGGAAA GAAGCTAAATACTTAGGGAAAACAATATATGAGCGTGCACCGATACCTGCTGGAATAGTGGACTTTTTGCTTCAAAACTC ACCAACAGCAAAAGTTGAGACCAAAATGTGCTAA
Protein sequence (LotjaGi1g1v0344600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDSTVEMLIPPKAKPEMPSQSENEDSTDSTVEKAKRGRHSEGESESESKVNNDRLSDLPDCVLLHILSFVKARNAVQTC ILSTRWKDLWKSLPSLILLSPDFSTLKIFTKFVSKLLELRDGSLPLHSFDFERHGSIEYIVHRRVVDYALSHNVQRLAMT VEYDYCHVARIFSCQSLTSLKLSVHPKQYNTFSTSFPISSCLNLPALTSLHLVGFTFHGSNNGQVEPFSAFKKLHSLIIR NCTVKNAQTFCISSTTLVDVTMRTPFGDFHKIELSAPSLQRFDFTGSSPYKRLCGSSLSSVKELSIDAYMGSYSPEPPLV LLSWLEELTNIKSLTVSTNTLQVLFLIPDLVNRKLPFLSNLKSLKVKVQRLSYILRMTMIAAKIQKATTASRREAARLRK EAKYLGKTIYERAPIPAGIVDFLLQNSPTAKVETKMC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 53 | 53 | - | – | |
MobiDBLite | 19 | 53 | 35 | - | – | |
SUPERFAMILY | 41 | 99 | 59 | 1.96E-10 | ||
Gene3D | 50 | 400 | 351 | 1.7E-22 | ||
PANTHER | 51 | 433 | 383 | 5.0E-82 | – | |
PANTHER | 51 | 433 | 383 | 5.0E-82 | – | |
ProSiteProfiles | 53 | 106 | 54 | 8.57 | ||
Pfam | 55 | 94 | 40 | 1.4E-5 | ||
SMART | 59 | 99 | 41 | 0.008 | ||
SUPERFAMILY | 169 | 372 | 204 | 5.1E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0344600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…