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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0344600 |
| Transcript ID | LotjaGi1g1v0344600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT5G22720.1 F-box/FBD/LRR protein; Swiss-Prot: sp|Q9FNI9|FBD14_ARATH Putative FBD-associated F-box protein At5g22720; TrEMBL-Plants: tr|A0A072UNA8|A0A072UNA8_MEDTR F-box/RNI superfamily protein; Found in the gene: LotjaGi1g1v0344600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81094495..81097507) extracted from Lotus japonicus Gifu genome v1.2.
GGGGAATTGTCAAACAGTTGAGATTCATTCATTTCAATCTCTCGACTCCTTACTCCTTCGTTTCCACAGCGCGAACAAAG TAGAGCCGCTCAATCTAGAGGTATTTCTCCATTCCCGAATGAATTTCATTTTCCATTTTTCCTGTATGATTGATCATGCT TGCTGATACTTATTAGGGTTCTTTCTAGGTTTTTTCCCCCAATGCAATCGAACATGACTTTGCTTAGTTTTGAAAATCCA CTCTATAATTGCATCTCTGTTACTTTAGATTGCAGAAGAATCATTCTATATATTTTTTTCCTTTACATGCATAGGCACTT ATCTGAATGTCTGATTCAACGGTTGAGATGTTGATTCCGCCGAAGGCGAAGCCAGAAATGCCCAGCCAGAGTGAAAATGA AGATAGTACTGATTCAACAGTTGAGAAGGCAAAGCGAGGAAGACATAGTGAAGGTGAAAGTGAGAGTGAGAGTAAAGTGA ACAATGACAGGCTTAGTGATTTGCCCGATTGCGTTCTGCTTCACATTTTGTCATTTGTGAAAGCCAGGAATGCAGTTCAA ACTTGCATATTATCCACAAGATGGAAGGATCTATGGAAAAGTCTTCCTTCGCTCATTTTACTTTCCCCAGACTTTTCGAC ATTGAAGATTTTCACCAAATTCGTGTCTAAGCTTTTGGAACTTCGTGATGGCTCACTCCCGCTGCACAGCTTTGATTTTG AGCGTCATGGTTCTATTGAGTATATTGTCCACAGACGGGTAGTAGACTATGCTTTGTCACATAATGTTCAGCGATTGGCA ATGACTGTGGAATATGACTATTGTCACGTCGCTCGCATTTTTTCATGCCAGTCTTTAACATCTCTTAAGCTTTCCGTTCA CCCTAAGCAATATAATACTTTTAGCACTTCATTTCCAATATCTTCATGTCTGAATTTGCCAGCATTGACCAGCTTGCATC TGGTTGGTTTCACCTTCCACGGGAGTAACAATGGCCAAGTTGAGCCCTTTTCGGCCTTTAAGAAGTTGCATAGTTTGATC ATTCGCAATTGTACCGTTAAGAATGCACAAACCTTCTGCATATCAAGTACAACACTTGTCGATGTAACTATGCGTACTCC TTTTGGGGACTTTCACAAAATTGAGCTCTCTGCACCAAGTCTTCAAAGGTTTGATTTTACTGGCTCCTCTCCCTATAAGC GGCTTTGTGGGAGCAGTCTTTCTTCTGTTAAAGAATTAAGTATCGATGCATATATGGGCTCATATTCCCCAGAGCCTCCT TTGGTTCTACTCAGCTGGCTGGAAGAGCTTACTAATATCAAATCATTGACAGTCTCTACAAATACTCTTCAGGTGCCTTG GCAGGCTTTGGGACTTTATTTTTACTTACTTCTTAAGATGCTTTTTAATTTCAAATTTTGTTAAATATCAGTCTACTTGC GTTTTATCGTTCCTAATTCACCCTCATTTCTCATTGCTTAGGTTCTCTTCTTAATTCCTGACTTAGTGAACCGTAAGCTC CCATTCTTAAGTAACCTGAAGTCATTGAAAGTTAAAGTGCAGCGACTTTCATATATTCTTAGAATGACAATGATAGCTGC GAAGATACAGAAAGCCACTACTGCGTCACGGAGAGAAGCTGCCAGGTTACGGAAAGAAGCTAAATACTTAGGGAAAACAA TATATGAGCGTGCACCGATACCTGCTGGAATAGTGGACTTTTTGCTTCAAAACTCACCAACAGCAAAAGTTGAGACCAAA ATGTGCTAAAGGTAAAATTGGCATTCAACTTTTTGAAAAGAGATTCTTATAATTTGTTTTGTTTTTCCTTCCTTCCCTAT TGTTCTTTGCTCAGTCTCTCTGCTTTTAAATTATTGATGGATAAATTATGAATCCCTTGGGTTGAGAAACAAATTGTACA TGTGCAATAATGTGATTGTTTGTATCCTTCTCACAACAGTAAGTCGGTTCTCTTTTGCTAGGATGGGGTAATGTCATTGC TTGTATTGAATGAAAGGAAGTGGCTGGTGGTTTGGGAAAAATCTCTATTTTGACGTTAATGGATGTTGATCAGAAAAAAA GAATAAAGAGTTTTTAGATGTTGAAGAAATGTGAAAAGTAGAATCTTTTGGTGCATAAAATTTGATTGAATACAGAGTGC TAGTTATCAGAAAAATACTTCTTTCACGTTTGATTTTGAAAATGGTAGCAGGACAATACAAAACTAAACATGCAGGACAG CACACTAGTCTTAAAATATGTCGCTCAGGAAATCATGGGCAACTTTTTGTCCCACACAGAACATCATCGAAAAAGAAAAA TGTTTGCAAAATTATTAATGTTATGCACCAACCACCTACACATTTGATAGAACTAAAAGTTGTGCAGTGACTTAGTTAAT TTAATTATATTGTGCTGTTCTGTGTATGTCATACCTTAAAAACACACCCTTTGTGCATTGGTCAGTGCATCAAATGCATG ATAGCTTAACAACCAAATACATATTTGGTTGGGTGCATCTTGATCACATGTAGTATTCTTTCTAGTTGATTATAAAATTT GCGTAGTCAATAAATCATTCTTTACAAGCAGGATTGTTGATGGAAAATGGGAAGCAATGTAAACTTGAAATTGGCGAAGA AGTCAAAGTTTTAAAGGGCCTTTGTTTGCATATTGGAAGTTGCAGTGCTGTTTGTGTCTTTGTTAGCAAGTCATTCTTTT TAAAATAAGGCTATAGTTACTTATGTGTTTATTCTTAAAAAAAAAGTTAGTTATGTGTTTCCTTTGTTTTAGTTGCGTTA TAATTTTGCATATCCTACCGTCTGTTTCGAATTTGGTTAGATTAAGGATGATCACCCATTCAAACATCCGGAGTACTCAA TATTTTGTTTTCGGAATATCAGAAGATGAATTTTGGTGCAAATGTTCAGTTGCATGTATTTAGTTATTGACTTGTTGGTG ATATGGTTAAGTGATGATAACTTGTGATCTTTGGTGTGAAGGGAATACTGGAG
CDS sequence (LotjaGi1g1v0344600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGATTCAACGGTTGAGATGTTGATTCCGCCGAAGGCGAAGCCAGAAATGCCCAGCCAGAGTGAAAATGAAGATAG TACTGATTCAACAGTTGAGAAGGCAAAGCGAGGAAGACATAGTGAAGGTGAAAGTGAGAGTGAGAGTAAAGTGAACAATG ACAGGCTTAGTGATTTGCCCGATTGCGTTCTGCTTCACATTTTGTCATTTGTGAAAGCCAGGAATGCAGTTCAAACTTGC ATATTATCCACAAGATGGAAGGATCTATGGAAAAGTCTTCCTTCGCTCATTTTACTTTCCCCAGACTTTTCGACATTGAA GATTTTCACCAAATTCGTGTCTAAGCTTTTGGAACTTCGTGATGGCTCACTCCCGCTGCACAGCTTTGATTTTGAGCGTC ATGGTTCTATTGAGTATATTGTCCACAGACGGGTAGTAGACTATGCTTTGTCACATAATGTTCAGCGATTGGCAATGACT GTGGAATATGACTATTGTCACGTCGCTCGCATTTTTTCATGCCAGTCTTTAACATCTCTTAAGCTTTCCGTTCACCCTAA GCAATATAATACTTTTAGCACTTCATTTCCAATATCTTCATGTCTGAATTTGCCAGCATTGACCAGCTTGCATCTGGTTG GTTTCACCTTCCACGGGAGTAACAATGGCCAAGTTGAGCCCTTTTCGGCCTTTAAGAAGTTGCATAGTTTGATCATTCGC AATTGTACCGTTAAGAATGCACAAACCTTCTGCATATCAAGTACAACACTTGTCGATGTAACTATGCGTACTCCTTTTGG GGACTTTCACAAAATTGAGCTCTCTGCACCAAGTCTTCAAAGGTTTGATTTTACTGGCTCCTCTCCCTATAAGCGGCTTT GTGGGAGCAGTCTTTCTTCTGTTAAAGAATTAAGTATCGATGCATATATGGGCTCATATTCCCCAGAGCCTCCTTTGGTT CTACTCAGCTGGCTGGAAGAGCTTACTAATATCAAATCATTGACAGTCTCTACAAATACTCTTCAGGTTCTCTTCTTAAT TCCTGACTTAGTGAACCGTAAGCTCCCATTCTTAAGTAACCTGAAGTCATTGAAAGTTAAAGTGCAGCGACTTTCATATA TTCTTAGAATGACAATGATAGCTGCGAAGATACAGAAAGCCACTACTGCGTCACGGAGAGAAGCTGCCAGGTTACGGAAA GAAGCTAAATACTTAGGGAAAACAATATATGAGCGTGCACCGATACCTGCTGGAATAGTGGACTTTTTGCTTCAAAACTC ACCAACAGCAAAAGTTGAGACCAAAATGTGCTAA
Protein sequence (LotjaGi1g1v0344600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDSTVEMLIPPKAKPEMPSQSENEDSTDSTVEKAKRGRHSEGESESESKVNNDRLSDLPDCVLLHILSFVKARNAVQTC ILSTRWKDLWKSLPSLILLSPDFSTLKIFTKFVSKLLELRDGSLPLHSFDFERHGSIEYIVHRRVVDYALSHNVQRLAMT VEYDYCHVARIFSCQSLTSLKLSVHPKQYNTFSTSFPISSCLNLPALTSLHLVGFTFHGSNNGQVEPFSAFKKLHSLIIR NCTVKNAQTFCISSTTLVDVTMRTPFGDFHKIELSAPSLQRFDFTGSSPYKRLCGSSLSSVKELSIDAYMGSYSPEPPLV LLSWLEELTNIKSLTVSTNTLQVLFLIPDLVNRKLPFLSNLKSLKVKVQRLSYILRMTMIAAKIQKATTASRREAARLRK EAKYLGKTIYERAPIPAGIVDFLLQNSPTAKVETKMC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 53 | 53 | - | – | |
| MobiDBLite | 19 | 53 | 35 | - | – | |
| SUPERFAMILY | 41 | 99 | 59 | 1.96E-10 | ||
| Gene3D | 50 | 400 | 351 | 1.7E-22 | ||
| PANTHER | 51 | 433 | 383 | 5.0E-82 | – | |
| PANTHER | 51 | 433 | 383 | 5.0E-82 | – | |
| ProSiteProfiles | 53 | 106 | 54 | 8.57 | ||
| Pfam | 55 | 94 | 40 | 1.4E-5 | ||
| SMART | 59 | 99 | 41 | 0.008 | ||
| SUPERFAMILY | 169 | 372 | 204 | 5.1E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0344600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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