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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0344700 |
| Transcript ID | LotjaGi1g1v0344700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor; TAIR: AT3G21175.2 ZIM-like 1; Swiss-Prot: sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24; TrEMBL-Plants: tr|I1JV87|I1JV87_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0344700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81098267..81103289) extracted from Lotus japonicus Gifu genome v1.2.
TGGAAAATAAACGAAACCAAATGAATTGTAATTTTTTATTACTTCTATATTACCCTTATTTTTAAAACACTAATATTGAA TAATATAGAAACCTAATTTTGTTATTAGCGTCTTCATTCGATCTCCTTCTCGAACCTTCTCTCACCTCCCGAATTCAATT CATTCATGGAGACTGAGTCTGTGTCTGAGTTCGATCCATGGAGCTAGCTTCCAAATTAGGGTTCCTACTCCTGTCCACAA ATTCAGAAATCGATGGCGGCCGTGAATCCACCACAGCCTCTGCAGTTCGAGGACCCTGCGATACCGCTCGACGACGACGA CGGTGCTGCCGGTGATGATGATGATGCTATGGATGAGTTGGAGGAGGCGGATGTCAATCCAGTGAGCGTTGCAGTGAGTG CGAATCACGAAGCAGTTGTTTTGCCTTCGCGTACTAGTGAGCTCACTCTCTCTTTTGAGGGTGAGGTTTATGTCTTTCCC GCTGTCACACCTCAGAAGGTTAATTTACATTTTTATCTACTTTTTCCACTTTTTCTTGGAAACTTCCTATCACTTCTAAG GTTTTTTCTTTTTGTTTGATTGTGCTAGTTGTTGTTCTTATTGTAGCTTGTTGTTTTGTTGGCATAATTCATAGTAATTG GGGACAGGTCTGGTTTTGTTGAATTTAGTACATGAGTTGTTAAATTGTAGTTAGGACTGTATATTAATCAAACTTACACA GGGTTTTACTTAATAAGATAAAATGAAATGCTAAGTTCAGTGGCTTGCTGATTATCAATATATTTTTATCAGTGTTATCA AATATCTGCCATGGCAGTTTCTCATGGTGTTTTTCCGCTGTGGCCGATATCCCACCATATGGCCGCTATTTCCACCATAT TCCGCAATTTTTAATCATGTATGGCGGGATTTTGGCTTTTCGCCATGACCCGCCATCCACAATTAATAACACTGATTTTT ATAGAACTTCTTTTAGAGCGCGCATAATGAAGCCGTAGACAGTGTAATAAAATCCAATCAGCAAAGTAGTTTGGTCTAAA GGTGTGATGCTAAATCAATAGTTCCCTACGGGGCATGTGGACTACTCGTCTATTCCTTTATTGGGTCATAACATAATTGA AAAGAAAGATATGTGAGGCTTGGGTGTGAACCGGAAAAGCGCTGCAGAAGTGTAAAGTTGGATTATTTGAAGTCTGTTAT TGTAATCTGTGTTGTGATGTGAAGAATCAGCTGTTCGAGTTCCTAAGCAGTATATGGCAAAAACTCAAAGACTATATGGT ATAATTAAATAAGGGCGTTCTTGCTAAAAAAGATTAATGCACCACAAACTACAAGTTGGTTCTTATAAACGGACCAAGCT ATATCTCCAATTTGGTTTTTATAATAAGGAATGAGGGAGTACTTCAAAACTCTTTAAATTAAACATATTTACTGCTTGAC TCTCCCAAAGGACAATGATTGAGGGTTTAGCTATTGAACTGTTTGATAATCAAATTTAACATTGCAGGTGCAAGCCGTTT TGCTGCTTTTGGGAGGACGTGATGTGCAGGCAAGCATGTCTACAGTTGAAGTACCACTTGATCAAAGTAACAGGGTAATG AAGATATTTGCTTAACAATAACAGGTTGTTAACATGAATTGCATTTTTATGCTTGCATTTGTGCATTGGCTACTGCAATA TCTAGGGGACGGATGGCAATCCAAAGCGTTCAAACCTTTCACGAAGAATAGCTTCCTTGGTCAGGTTCCGTGAAAAACGC AAGGAAAGATGTTTTGACAAGAAAATTAGGTACACCGTGAGAAAAGAGGTGGCACAGAGGTAAATATATTACAACACACC CTTTCACCCCATTAGTGAATGACTTATTTTACTTGTATGAATTTGTTTACCGAAATTGTCTTGGCAGTGATGAAATATGG TCACTCTGTTGTCTTAGAATATTGTTTGTAAACCTCAAGAGTTGTGGTAAAGCTCAGGAAGTTATTTATATGTTTTGCAT CTTGGCCAAGTGTCAGCTCAACTCTGCACACAATATTCCAGACAAGACTGTTAAAAATTTCAACTTTAGAGAAAGTAGAA TACTGGTCTTTTTTCTTCTTGAGGAGTGAAGTAGAAATAAATAAATTCAATATAGCTTCGTAATCCTCTTTGCAAAACAG TAAAGCAAATATGTTGGGAAAAGCCACCAACACCATTAATGTAAAAGAGGTTTCATGCTCGGTCTGAATAAATTTATTTA TATTGAATTATCATACAGTGAAATCTTAGACTTATTATCAGGTAAGGCAAATCAGTGAGCATACTTCTCAACAGCTAAAA GTGAGGAGTGAGGAACATAATGCATTGTCTCTGGATAATTGGTAATTGAATGCCATTTTGGTCATTTGAGGTCCAATACT GTTATCCACTCCTTGTATGGTTTTGTTTGATTTCAAATTGTTTTCTAAATTTGGTGTTTTTATAAGAAAATATAAATGTC TTTTTTTTATTATGGTTTTGTTTGATTTCAAATTGCTTTCTAAATTTGATGTTTTTATAAGAAAATAATAAATGTCTTTT TTGATTATGTTTTTGTTGTCTTCTTTTTTCTTTTTTTTTTCTCGCTAGGATGCATCGGAAGAATGGCCAGTTTGCATCCT TGAAGGAAGGCCCAGGTTCATCTAATTGGGATTCTGCTCAGAGTTCTGGTCAAAATGGCACTCCTAATTCTGAATCTCTG TGAGTTTTAAGCTTGGATACTTTTTGTATATATATTATTTTATTCAAATGTAATGGTTCTTTTGTGTGAGATACATCATT CATGCTTCTTGTTTTTTCATGTCCTCCAGACGTAGATGTCAACATTGTGGTGTCAGTGAAAATAACACTCCTGCAATGCG CCGTGGCCCTGATGGACCTAGAACTTTATGCAATGCATGCGGCCTTATGTGGGCTAATAAGGTGAGTCATTATGCTAATG TGTACATTTTGGATATAATGCTTTGTTCAACTTCTGCACTTCATTTAAAGTCCAATAACAACATTAGCCTTTTCCACTAG GTGGTGTCAGCTATATAGGTTAAACTTCAAACTATGCAATCATGTAATGCCAAAAATCAAGTCATTAGATTTAAAATAAA ATGATCAGAATCTGACTTTTTTTTTTCCTTTTATATAATCCCCTCCTTAAGTTGATTGGAAACTATTTTGGATCTCTTTA GATTATGCAACTAAACCATATCCATTTATCATTTTTTACGGTGCCATTTCATTGTTGATGATCTGGACTAAGTTCTTACA GGTATAAGAACTGGCTGGGGCTTTATAGCAAATGGCCCCTAGGCCTTAGTAGTGGCAAGTTAGATCCAGATATATGATAT GCTGGTCTAATATATTTGTTCCGTTTTTTCCTTGCATTCATTCCCACTGAGTCTGCTTCTTAACTATGACAGGGGACACT CAGAGTTCTCAGGAAAGGAGGAAGAAGTATTTCTGTTTTGCAAAGTGAACCGGTATGTAAGATGTAGTTTTCTATGTTTT CCAGGTGTATTCCCTGATTGGAAGCCAATTGTAAATGCTAAGTGACATTTTTAGATACTGTTAATTACATCAGTACTAAA CACATAATAAAGTGATTTGGATACCAACTTGATGGAATTTGCAGGACCTTTCTATTGATGTCAAGCCTACTGTTCTTCCA GGGGAATTGCCTGTCATCCAAGATGAGCAAGTAGAACTCTTTCACATATTGCAAGTTTATCCTCAGTACTGTTGTTCCAT TTAGCATTTACATAAAAAAATTGTGGTGTGTATTCAGGGTATTTCTGAAGATCCTTCTGAGGCCGTTGCTGCTGAAGTTT CTAACAATCGTGCTGTGAACCCCGGTGATGAGGTAGTTCTAAATGTTTTTTTACCTCAAATTTCAATTATTCAGACACCT TTTTTCAAGCATTGACAAAATAAAAGCTTCTAATGGGTATTAGGGTGATTTACTTGTTCAGGAATTGCCTGAATCTGCAG ATCACTTTAAGAACTCTCTGCCACTGGATATTAGTCATTCTTCGCCAAATGATGATGAGCAGGTATTGTTTGAGTTGTTT GTTTTGTAGAGTAGTTTTGCCTATGTGGCTCTTGTATTCACAACTCCCACAACTGTACAGGTGGCTCCACTTGAACTATA CCAATGAAACTTAACATGGAGCTACTGGTACATTAGTAAATGCAAGAGCTGCATAAGTAACCTAATTCTCCATAGTTATT ACTTATTAACGTGAGGTTTGTTTGATGTACAGGAACCTCTGGTTGAACTTTCTAATTCTTCAGACACAGATATTGACATT CCTGGAAGCTTTGATTAAAAGGTCCCAAGAGATTCATCACGTCTGTGATTTTATACAGGCTCTCTGTAATATATTGTTCA TGTACTAATAAGATGCACAGATCTAGAAGCAGTGATACAAGACAATTAAGAAAATTTGGGTTATGACCAAATTTAACACT CACAAATGGAATGGCCATTCTCTGATGAGCAAGTGTAGAGAAGCTCTGCTGTTCCCGCCTAACATTAAGGAGTCTGCAAT ATTGTTTGTGTATATGTCATCCGTTGATCTTCCTTGACTGTTTATATCATGAAATACTAATTAGCTAGGGCTCATGTTAA TAAAATGCCCCTGACTCTGATAATTTAGTTCAGATCAAAGCATTGAGACAATAAATCTAAGAGATGAAACTATGGCGATA TGCTGTGCCACTCAATGGATCAAAGCATTGATACCATAGAAATAGACTTGTTTCGAACTTCTGTACATGTACTTGTAAAT AAATATAGTTTGTCTTACTCGTCTTCTCAGCTAGTTACATTTATGTTGTCTATTGTCTTGGACATTTTGGTTCTTGTTGT CTTCAACTCATCATCATATACAAATATCCTAATATTGTACTAAACTTAGTCATATTAAAATGAACTTCTCAGAAATGTTC CACCACCTATAAGTCAATTAAGCTTATTGAATTTAGTTGCAATTTGTCATTCTATGTGCTAGA
CDS sequence (LotjaGi1g1v0344700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCCGTGAATCCACCACAGCCTCTGCAGTTCGAGGACCCTGCGATACCGCTCGACGACGACGACGGTGCTGCCGG TGATGATGATGATGCTATGGATGAGTTGGAGGAGGCGGATGTCAATCCAGTGAGCGTTGCAGTGAGTGCGAATCACGAAG CAGTTGTTTTGCCTTCGCGTACTAGTGAGCTCACTCTCTCTTTTGAGGGTGAGGTTTATGTCTTTCCCGCTGTCACACCT CAGAAGGTGCAAGCCGTTTTGCTGCTTTTGGGAGGACGTGATGTGCAGGCAAGCATGTCTACAGTTGAAGTACCACTTGA TCAAAGTAACAGGGGGACGGATGGCAATCCAAAGCGTTCAAACCTTTCACGAAGAATAGCTTCCTTGGTCAGGTTCCGTG AAAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTACACCGTGAGAAAAGAGGTGGCACAGAGGATGCATCGGAAG AATGGCCAGTTTGCATCCTTGAAGGAAGGCCCAGGTTCATCTAATTGGGATTCTGCTCAGAGTTCTGGTCAAAATGGCAC TCCTAATTCTGAATCTCTACGTAGATGTCAACATTGTGGTGTCAGTGAAAATAACACTCCTGCAATGCGCCGTGGCCCTG ATGGACCTAGAACTTTATGCAATGCATGCGGCCTTATGTGGGCTAATAAGGGGACACTCAGAGTTCTCAGGAAAGGAGGA AGAAGTATTTCTGTTTTGCAAAGTGAACCGGACCTTTCTATTGATGTCAAGCCTACTGTTCTTCCAGGGGAATTGCCTGT CATCCAAGATGAGCAAGGTATTTCTGAAGATCCTTCTGAGGCCGTTGCTGCTGAAGTTTCTAACAATCGTGCTGTGAACC CCGGTGATGAGGAATTGCCTGAATCTGCAGATCACTTTAAGAACTCTCTGCCACTGGATATTAGTCATTCTTCGCCAAAT GATGATGAGCAGGAACCTCTGGTTGAACTTTCTAATTCTTCAGACACAGATATTGACATTCCTGGAAGCTTTGATTAA
Protein sequence (LotjaGi1g1v0344700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAVNPPQPLQFEDPAIPLDDDDGAAGDDDDAMDELEEADVNPVSVAVSANHEAVVLPSRTSELTLSFEGEVYVFPAVTP QKVQAVLLLLGGRDVQASMSTVEVPLDQSNRGTDGNPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRK NGQFASLKEGPGSSNWDSAQSSGQNGTPNSESLRRCQHCGVSENNTPAMRRGPDGPRTLCNACGLMWANKGTLRVLRKGG RSISVLQSEPDLSIDVKPTVLPGELPVIQDEQGISEDPSEAVAAEVSNNRAVNPGDEELPESADHFKNSLPLDISHSSPN DDEQEPLVELSNSSDTDIDIPGSFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| MobiDBLite | 16 | 32 | 17 | - | – | |
| PANTHER | 17 | 330 | 314 | 1.5E-137 | – | |
| PANTHER | 17 | 330 | 314 | 1.5E-137 | – | |
| ProSiteProfiles | 57 | 92 | 36 | 12.914 | ||
| SMART | 57 | 92 | 36 | 2.1E-7 | ||
| Pfam | 59 | 91 | 33 | 1.0E-9 | ||
| ProSiteProfiles | 125 | 167 | 43 | 12.65 | ||
| Pfam | 125 | 166 | 42 | 9.4E-15 | ||
| MobiDBLite | 158 | 194 | 37 | - | – | |
| MobiDBLite | 167 | 194 | 28 | - | – | |
| Gene3D | 185 | 245 | 61 | 2.1E-10 | ||
| SUPERFAMILY | 189 | 243 | 55 | 1.47E-11 | – | |
| SMART | 190 | 243 | 54 | 8.2E-12 | ||
| ProSiteProfiles | 190 | 249 | 60 | 8.88 | ||
| CDD | 195 | 242 | 48 | 2.00034E-15 | ||
| ProSitePatterns | 196 | 223 | 28 | - | ||
| Pfam | 196 | 232 | 37 | 2.2E-14 | ||
| MobiDBLite | 271 | 345 | 75 | - | – | |
| MobiDBLite | 324 | 345 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0344700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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