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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0344800 |
| Transcript ID | LotjaGi1g1v0344800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor; TAIR: AT4G24470.1 GATA-type zinc finger protein with TIFY domain-containing protein; Swiss-Prot: sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25; TrEMBL-Plants: tr|G7J4K3|G7J4K3_MEDTR GATA transcription factor; Found in the gene: LotjaGi1g1v0344800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81103355..81109340) extracted from Lotus japonicus Gifu genome v1.2.
TTTGAGAGACAAATATAGAGAGGCCCATTAGGTGGTTGTTTTTGTTTTACCTCATCCTCTTTTCAGTTTTCACTCCCTCA TACATTGCTCACCTTCACAACACGACATTCTGAGACACATTTATCCCCTTTGTCCCTCCCTCGTTGGTTCCTTACTCCAT TCTCTTCGACAACTCACTCTCCCTCTCTCAAATTCTCACATAATTATTAGGGTTAGGGTTTCAACCATTCCTCCAATTTC GAATGCATTGAAAGCCCCTAATTCTCCCACCCTGCTACCAACAATGTACAGCTCCATGAACATCCCCGATCAGATCGAAG ACAACGACGGCGAAAATCACATCCATTACGATTCCCATACCCTCGATGACGGTGGCGGTGGCGGTGGCGGAGTCGAAGAT GTTTCCACCGACAACGCGTATGGTTCCGGTGGTGTAGGCCATGAATTGTCTATCCCGCCCTGCGATGATTCTAGCCAGCT CACGCTTTCGTTTCGGGGCCAAGTTTATGTATTTGATTCTGTCACGCCTGAAAAGGTAGCTTTTTCCCCTTTTCTTCTTC ACTGTTGATTATTTTCCCCCAATTTGATTTTTTTTCTTCAATAAAAAATGTGAATTTTCCATGCAACTGAAGGAGATTTA TGTTGTTTTTGAGAATGAAGTGTTGCATTTGGTTTCTGTTGACAGGTTCAAGCAGTGTTGTTGCTTTTGGGAGGGTGTGA ATTATCTTCTGGGTCGCAAGGTTTGGAGATATCGCCTACAAATCAGAGGGTATATATATACACATGTTCATTGTAGGACT TCAAGCTCAAGCAAAAGTGGCTGATGAGTTTTTGTTTTGTTTTGATTGGTTGTGTTTTTGGGTGCAGGGTTCAGCGGAGT TTCCTGCGAAATGCAGTCTACCGCAGCGAGCAGCCTCGTTAATTAGGTTTCGTCAGAAGAGGAAAGAGCGGTGCTTTGAT AAGAAAGTTAGATATGGTGTGCGTCAAGAAGTTGCGCTAAGGTGTGAATCTGATCGTGAGCATACTGGCTTTCTAATTGA AACTTTTTAAATTAATGTTGGCATGGACTCTTAAATGTTGATGCTGCTTTATATATGTACCATCATTCAAATGATGGTTA GGAATGGATTTTTTTGTTTGCTTTTAAACCGGTTTAGATGTAAGTAGTACATATGTAATTTGTCATTATGGTGGAGACTC AAGAATACATGCTTTAAAGTGTCATCTCCTTACAAAGTATTGGGAAATATAGATTTTAGAGTGGGCGATGTGCATGAGTT TAGTTGAAAAAATCTTTCTTTGGTACTTCTATGTTAAGAACTATGATTACCTCATGACATATATTTGGGACAATCTTGAC TTGGATGATGACGGTGTTGAGTAATCTCATAATTTCACTATTTAACAGCCAGTGCTTTTGTATAATGGAAGGACTGGATC CTAATTTAATATCCAACTTTGTTATGTTGTGCCAGCATATACTTACATTTGCCGAATACTATCGTTAAATCTTTCATAGT TTCATTGGTGTGATGAGGTGCATTATTTTGTACATTTTTTTCATTTTCGTTTTACTTGTCTGTGTATAAATTTAAACATG TTATGGATTCTTGCAATTGACTCAATTCTAAAACCTAGGTTTTCTTATTTGCGGCATGTTTGTGCTTTAAAGAGAGTGAT TTTTCTTTGAAAATATTCTCACAAGTTTTATAACTATGTAACAAGTCTTTTTGAAAAAAAAGACCAAGATCCTAGGCAAA ATCTGCTTTGATAATTTTCTCATGAGCTAAAAATAGCAGATTCTAGAGAAAGGTTCTGAACAAAAATTTATCATGAAAGT GCTATATCTCAAAGATGAAATAAGCACACCCTTAATAGATATATTCCTAAAGCACTAATTTTACCCTTTAAATGAGTGAT TTACATGAAGATATTTCTAAATCTGATGATGGAAAAGATTTTGTTTCCATTTTTTTTGCACTGTTTCTAAATCTTCTGTT TGCACAACTGCCATCTGAACTTCTATATGGCGGGATTTCGGCTTTCTGCCATCCACAATCAACAACACTTTGTTTATTGT TTTTACTTTTTAGTATAGAGGTTCTGAACTATGACTATTTGGATTATGAACTACGTGGGTTTACAAGTTTTTTCATTGCA GCTGCTGTAGTGGCCATTCTATGATCTACTAAGCTGCATATAGCATTTTCGGGGTAGTCACTCCAAGCCATGTTCTGTCG CTAACCACTTTTTTTGTTTATCCCTATTTTCCTGTTTTTGTGTGTCAAATATTGAGCATAATAAGTTTAGATGAAAGTCA CAAAACTAACATTATTGCTTCCATGTTTTTTTTGCTTCCTCTTCTGGTTTGCATGTATTTAACTGAGTACAAAAAATATG AAATATAAGGCATACTTTAATATCCTCCGACAGTATGTTGAATGCTTGATACATCCATTTATTTATGTATGCTTGAGTGA AAGGCTACATTTCGTAAGCTCTCATCTTCTCGTGGAGTATTCCTTGTCATCTCTGTTCCACTTTTTTTGTTGTTGTTGTA TGTCATTTTATCTTTCGACTTTATTTGCATCAATTCATAATTTCACTTATATATTTTCAAATGTAGGATGCAACGTAATA AAGGACAATTTACATCAGCTAAGAAACAAGATGGAACTAACAGTTGGGGTGCAGATCAAGATTCAGTTCAGGATTTAGTT CAATCAGAAACCTCGTAAGTTTCATGTTACCCATGTAATACTGTAGCGCGAGTCTTTTGTCATGTGAATTTTTCGACTGA ATGTGGGTTTCTAATGGTTCAATTTGAACTGAGATATGCATTGGATGTTTTACCATCTCCTTGATTTGCCTGATTATATA GGTGCACGCATTGTGGAACAAGTTCAAAATCCACCCCCATGATGCGAAGGGGGCCATCTGGTCCAAGGTCACTTTGCAAT GCTTGCGGGCTTTTTTGGGCAAATAGGGTAAGTATTTTTCCACGTGGTTTTTATGGGGGGGGGATATTTTATTCGTGTTA TTTTCCATTCCTAGACATCTTTCTATCTAAAGCATTTGAAATTGGGGAAAAATATTATCTTACACAGTTACACACTTATT TCTAACCAGAAGAGACTCCCCTCTGGCCGTGTTTTAAATCTTTTTGCTATTTTTTCCTCTGTTTCTTGAGTGCTAAGGAT TGAACCCTAGGTCTCTTATCTTACATCACTTTGTTATTAGAGATTTGCCTGTCAACCAACAGCGGGGACAGACCCAGTCT TTGCCAGCAGAAGAGATTGATGTAGGAGTATGAGTCCCAATATCAGCTGGATGGGAGACACAGAACTCCCATTTTAAGTA AAGGCTCTCCACAGACTGGCTTTTAGGACTTAGGAGTGGACACTCTACATCTTCATCTACTGGAAATTGTAACTAGAAAA AACATTAGTAAATTGTTTAATGTTAACTGAGAGTTGGTTTGTTTTTGAGAAAGGGAAAACCTAGTCTTATAAAGCTCCTG CTACGCATAAGTTCCAGGGAGGGGCCGAACTCACTTTGTGGATCTAATGTAGGCAGCCTTACCTTGCGTTTTTGCAAGAG GCTGATTCCACAGCTTGAACCTATGACTGCAAAGTTGTAGACTTATAATTTCATTCTTTCTATATGATTTATATGGTACC ATAGTAGTCAATCCCGGATAGCGACGCGTAGCAGCCTGCCCCAAAAGTGGGATGGCTGCTATTCAGATTTTTTATATATA ATAAAAAGCTTAATACTATATACATATAAATACCTAAAGATGTCAAATATTGCCTAAAATTCATAACATTCATGATAGCA ATAAAAGTCATAGGTCTTGAACGATAACACACAACTAAAAACCACTATTGGCCGTGATTCAATATAGCACCGCTATTGGC CGCGATATGCCGCTATTTTGTCCGTTATTCGCGTGCTACGGCTGCTATTGTGAGGTGTGCCGCTATTTCATCTCAATAGC GGCAGGTAGCTGCTACGCCGCTATAGCGAGCTACTGACTACTATGTATGGTACGATTTTCAGTTAGTAAATTATGTGTGA ACTTTTCCAGGTGTGTTTGGATGAACATTAGCAAAATTGATTATGGACAAAATTGATTCTACTAAAATTGCGTATGGTAC ATGCGAGTTAAAATGATGTGATTTATGTTTGGAAACCTTTACAAAAAAAGTGGGTTTTGTATGGTAATATTATTATGAAA TTCAGTCTTAAAATCTCAAAAATGATTATGTGTAACCCAGAAGCAACTACTTGATGTGTCAAGTAGAATTGATTCTGCTT TACTGGTGCACCCAAACGTCATTTTGACTAGTTAGAATTGATTTTAACCAAGTAGAATTGATTCTATAGAATTGATTGTG GTTTCCAAACACGCTCTAAAAGACTAAAACTATTTGTGATTATAAAAAAAATCTTAGGCTGTCCTGCTTATCGATTTCAC TATGAATTCTTAGTCTCAGATGTTAATTTAATTTCCTTTTCCTCCCATTTCAAAGCATATGAAAGGGAAGTGCACATATA TTCTCGTAGGCATTAAATTCAAATTTAGCCAACTGAATCTGAAATTTGCTACTTTCATTCATTCTGAATCTTATCGTGGA GTTGTCAATAGTCCCGGGTTTTGACATTGAAATTGTGCAGGGTACTTTGAGGGATCTTTCTAGGAGAAACCATGAACAGT CTTATGCTCCTCCTGAGCAGGTATGATGCTTTTCATCTTCTATACATCAGGTTATCTTCTACTCCATCTGGTAATAAATG CATTTCCCCTAATTTTGCGCCTAATCACCAGGTAGGAGAGGGTAATGACTTGAACTGTCGGACTGCAACCCCTTCACATC ACGATCCCCGGACTGCAACCCCTACACATCACGACCCCGTTGATGATAAAACAGCTTTGGTGGTATCTGATTGTTGAGTT TTTCTGGTCCTTGACAGTGGCAATTGTAGGTTTTTAGTAATTGCATTCAGTTTGGCTGATAGTTGTACAGATATAGCAAA GCTTTCATCAATACAAGAGGTTTATTTCTATACTCTTGGATTAGTTACATTTGTTGTTTGTCTCTGAATGCATAAACTAG AATTTGAATGATGACTTGATCTCATGCCCTGGACGGTTGTTTTAGTTTGATCTTAATGTGAAAATATTCCAAACAGTATG CAATAGCTCAATTTAATCTTTCCGGTTAAATGAAGTTGGATAACCATGGCCGACTCTAGGCTTTCAGTCTGGATGAATCG TGTGGGACTAAGGGCCAGACCCACAAGAAATTAAGTTTTGATTAACCAGTTAAAATAATAAAATGAAAAAAAAAAGAATT GAGACTAAAGATATCTGTTGACACAATGCAAATAGACATTATCGCTCACTTTGTGATAAAAAGTGAATGAAATTCTTTTG ATTGGTAGAAAGTTTGTATGTGACTACACATTGCACCCAAACTAGTATTTGAATTCATAGCCAGTGTATAGTCTGCCACT CCACCTTCAACACCATCTCTCCCACAAGAACCACCATAACCAACATTACCTTAAACCCCATTTTCTTCTCATAGAAGCCA AACTCCATTGCCCAGAAGAACCACCTTCAAACCACCTCCATTGCACAGAAGCCATAACCAAGTCATTAATTCATTGTTCA TACCTTCATCAAGCACCATAACCAAGTCATTAATTCATTGTTCATACCTTCATCAAGCATAACTGGTGATATAATAAAAT ACAACGGAACAAAATGAAATGAGATAGTACAGATTAAAAATACTTTCCACTGTTTAAATATAGGGTTAATGGTCAAATGA GGCCCTGCGTTTGTAAGTGTGTTTGATTTTAGTCAATTTGAGAAAAAAATGACGTTTAGTGGCAGTCATTTTTACAATTA CTGGCAGTTTTTGACCGCTACTAAACGTCGTTTTTCGTCAAAGGGTCTAAAATCAAACTCGCTTAC
CDS sequence (LotjaGi1g1v0344800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAGCTCCATGAACATCCCCGATCAGATCGAAGACAACGACGGCGAAAATCACATCCATTACGATTCCCATACCCT CGATGACGGTGGCGGTGGCGGTGGCGGAGTCGAAGATGTTTCCACCGACAACGCGTATGGTTCCGGTGGTGTAGGCCATG AATTGTCTATCCCGCCCTGCGATGATTCTAGCCAGCTCACGCTTTCGTTTCGGGGCCAAGTTTATGTATTTGATTCTGTC ACGCCTGAAAAGGTTCAAGCAGTGTTGTTGCTTTTGGGAGGGTGTGAATTATCTTCTGGGTCGCAAGGTTTGGAGATATC GCCTACAAATCAGAGGGGTTCAGCGGAGTTTCCTGCGAAATGCAGTCTACCGCAGCGAGCAGCCTCGTTAATTAGGTTTC GTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATGGTGTGCGTCAAGAAGTTGCGCTAAGGATGCAACGT AATAAAGGACAATTTACATCAGCTAAGAAACAAGATGGAACTAACAGTTGGGGTGCAGATCAAGATTCAGTTCAGGATTT AGTTCAATCAGAAACCTCGTGCACGCATTGTGGAACAAGTTCAAAATCCACCCCCATGATGCGAAGGGGGCCATCTGGTC CAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAATAGGGGTACTTTGAGGGATCTTTCTAGGAGAAACCATGAA CAGTCTTATGCTCCTCCTGAGCAGGTAGGAGAGGGTAATGACTTGAACTGTCGGACTGCAACCCCTTCACATCACGATCC CCGGACTGCAACCCCTACACATCACGACCCCGTTGATGATAAAACAGCTTTGGTGGTATCTGATTGTTGA
Protein sequence (LotjaGi1g1v0344800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSSMNIPDQIEDNDGENHIHYDSHTLDDGGGGGGGVEDVSTDNAYGSGGVGHELSIPPCDDSSQLTLSFRGQVYVFDSV TPEKVQAVLLLLGGCELSSGSQGLEISPTNQRGSAEFPAKCSLPQRAASLIRFRQKRKERCFDKKVRYGVRQEVALRMQR NKGQFTSAKKQDGTNSWGADQDSVQDLVQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSRRNHE QSYAPPEQVGEGNDLNCRTATPSHHDPRTATPTHHDPVDDKTALVVSDC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| MobiDBLite | 12 | 26 | 15 | - | – | |
| PANTHER | 15 | 267 | 253 | 3.7E-133 | – | |
| PANTHER | 15 | 267 | 253 | 3.7E-133 | – | |
| ProSiteProfiles | 59 | 94 | 36 | 15.188 | ||
| SMART | 59 | 94 | 36 | 7.1E-12 | ||
| Pfam | 63 | 93 | 31 | 2.7E-13 | ||
| ProSiteProfiles | 126 | 168 | 43 | 12.481 | ||
| Pfam | 126 | 168 | 43 | 2.1E-15 | ||
| Gene3D | 185 | 243 | 59 | 8.6E-14 | ||
| SMART | 188 | 241 | 54 | 4.7E-16 | ||
| ProSiteProfiles | 188 | 237 | 50 | 10.528 | ||
| SUPERFAMILY | 191 | 243 | 53 | 1.38E-12 | – | |
| CDD | 193 | 241 | 49 | 2.80753E-15 | ||
| ProSitePatterns | 194 | 221 | 28 | - | ||
| Pfam | 194 | 230 | 37 | 3.8E-15 | ||
| MobiDBLite | 236 | 281 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0344800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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