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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0346200 |
Transcript ID | LotjaGi1g1v0346200.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT1G16930.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FFW2|FBD17_ARATH FBD-associated F-box protein At5g38590; TrEMBL-Plants: tr|I3SQ21|I3SQ21_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0346200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81343752..81345519) extracted from Lotus japonicus Gifu genome v1.2.
CGAGGCACGAGCCTTTCTTCAAACGCCATCCTTCTATTTTTCCCTATTTTCCATTTTTCCTCATACCTTCTAAAACCGCC AAAACCCATTCATTGTTGTGCCATTCTTCCATTTTACTCTAACTGCTATATGTTCGCAGAGGCTCCATCTTTTCCCTCCA TTTGTTTCTGATTCATTTCTACTGCCCCAAAACCAAACCGCACTTCCGTGCTGCATCCACTGATTCTGATCGGAAGAATG GCAGATATGGATGACAGGATTAGCAGGTTATCAGATGAACTCCTCTGTCACATTCTCTCATTTCTTCCAACTCAACAAGC AGTTGCCACAAGTGTTCTTTCAAAGAGGTGGTTGCCGCTGTGGATCTCAGTCCCCGTTCTAGACTACGACAATGTGAGTA ACCGCGAACCCTCACATTCCTTTGAAAGGTTAATCTACGCAACCATTCTAGCCAGAGATCGGGCACAACCCATTACAACC TTCCGTCTCAAATACAAGCCTCGTGTTCGTGAACATGTCAAGGATGTCAATGTTTGGGTAAACACTGCTATACGACGTGG GATTCAGAACCTTGAAATCAAGCTTGTATTAGAGCCTGAAACCGATTCTGATACCGATTTTGAAGCCGATTTTGATTCTG AAACCGAGGATGAAGTGCTGCCAGAAATTAGGTTGAGCTGCAGCAGAATTTTCAGCTGCAAAACCCTTGTTGTTCTCAAG TTGAAAGCGGTATCTCTGGCTGCTTCTTTTTCGTTTGAGCTTCCCTCACTCAAATCCCTACATTTATCTCATGTTAAATT TGATAAAGGTCAATATCTTATAGAGATTCTTTATGGATGTCCAATGCTTGAGGATTTGAAAACACGTAACCTAGATTATG GCACCGGCTCTATTTGTGAGAAACGATTTAAAATCTTACCTAAATTGGCGAGGGCAGATATGGATTTTTCTTGGCTGGAA ACTGAGGATGGTAATAATCTCAAGATTATTCTGAAAGCAATATCTAATGTGGAGTTTTTGACCATTGACCTGGTTAGAAT ATATTGGATAGTAAATACTTCTAGTTTGTTGTCTGGTTTTGTTTTTAGATAATGTCACATATATTTCTCATAATTTGTCT TTATAACTACTGCAGATTGGAGTTGAGGTTGTTGATGATGTGGTTCCTGAATTTCCTCATTTAAGGCATTTGACCCTCTC CGGGGCTTATAGAAACTCGCATTTGACGCTTTTGATGCTTAAAAATTGCCCCAAGCTTCAAAGTTTTAAACTTTGTGGAT CTTTTGGTGCTAAGGACGTTCTAACTTACCCTCAATTTGTTCCTGAATGCCTTACTTCGTGTTTATCTAAGTGCTATCTC GAACGTTACCAATTTACAGAAAGTGACCTAAAATTTGCGAAGTATATTATGCAGAATTCAACATATTTACAGGTCATGAA AATTGGTGATGCTTCACCTAATCAGTCTGAAGTACTGAAGGAGTTGTTAGCTTTGATCCCAAGGAAATCTGCATCGTGTG AACTTTCTTTTATTTGATAGGTTTGTTAGTAGCTGCAGCATGTGCCATTTGTTAACATAATGCAAACGTGAGGGTTTAAG TGGATTGGAAATTACTATTTCATATGCCAATGATGTACTGTTTTACCCATTGAGAAAGGATGCCTTTTCTTCTTTCTCAT GATAGTATTATGACATAATTCTTGGTCGGTGGCTTATCATTTTATAAGATACTTGCAGGAACTTCAATTCCATTCCTTAA TAAGCTGG
CDS sequence (LotjaGi1g1v0346200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATATGGATGACAGGATTAGCAGGTTATCAGATGAACTCCTCTGTCACATTCTCTCATTTCTTCCAACTCAACA AGCAGTTGCCACAAGTGTTCTTTCAAAGAGGTGGTTGCCGCTGTGGATCTCAGTCCCCGTTCTAGACTACGACAATGTGA GTAACCGCGAACCCTCACATTCCTTTGAAAGGTTAATCTACGCAACCATTCTAGCCAGAGATCGGGCACAACCCATTACA ACCTTCCGTCTCAAATACAAGCCTCGTGTTCGTGAACATGTCAAGGATGTCAATGTTTGGGTAAACACTGCTATACGACG TGGGATTCAGAACCTTGAAATCAAGCTTGTATTAGAGCCTGAAACCGATTCTGATACCGATTTTGAAGCCGATTTTGATT CTGAAACCGAGGATGAAGTGCTGCCAGAAATTAGGTTGAGCTGCAGCAGAATTTTCAGCTGCAAAACCCTTGTTGTTCTC AAGTTGAAAGCGGTATCTCTGGCTGCTTCTTTTTCGTTTGAGCTTCCCTCACTCAAATCCCTACATTTATCTCATGTTAA ATTTGATAAAGGTCAATATCTTATAGAGATTCTTTATGGATGTCCAATGCTTGAGGATTTGAAAACACGTAACCTAGATT ATGGCACCGGCTCTATTTGTGAGAAACGATTTAAAATCTTACCTAAATTGGCGAGGGCAGATATGGATTTTTCTTGGCTG GAAACTGAGGATGATTGGAGTTGA
Protein sequence (LotjaGi1g1v0346200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADMDDRISRLSDELLCHILSFLPTQQAVATSVLSKRWLPLWISVPVLDYDNVSNREPSHSFERLIYATILARDRAQPIT TFRLKYKPRVREHVKDVNVWVNTAIRRGIQNLEIKLVLEPETDSDTDFEADFDSETEDEVLPEIRLSCSRIFSCKTLVVL KLKAVSLAASFSFELPSLKSLHLSHVKFDKGQYLIEILYGCPMLEDLKTRNLDYGTGSICEKRFKILPKLARADMDFSWL ETEDDWS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 4 | 244 | 241 | 5.5E-20 | ||
PANTHER | 5 | 118 | 114 | 3.2E-41 | – | |
PANTHER | 5 | 118 | 114 | 3.2E-41 | – | |
SUPERFAMILY | 6 | 48 | 43 | 1.96E-11 | ||
Pfam | 7 | 39 | 33 | 2.1E-7 | ||
PANTHER | 148 | 219 | 72 | 3.2E-41 | – | |
PANTHER | 148 | 219 | 72 | 3.2E-41 | – | |
SUPERFAMILY | 149 | 236 | 88 | 3.92E-7 | – | |
Pfam | 177 | 202 | 26 | 0.0016 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0346200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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