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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0346700 |
| Transcript ID | LotjaGi1g1v0346700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT1G16930.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930; TrEMBL-Plants: tr|I3SQ21|I3SQ21_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0346700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81384067..81386112) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGTTCATTAAATAGAGGTTATGAACAATTTACACAAACCCTTTTTTTTCCCAAAATCATGAACACCATCTCATCGC TGCCGTGCTGCATCCACTGATTCTGATCGGAAGTTTGGTTCAGCAAATATGGTGGACAGGATTAGCAAGTTACCAGATGA ACTCCTCTGTCACATTCTCTCATTTCTCCCAACTCAACAAGCAGTTGCCACCAGCATTCTTTCAAAGAGGTGGTTGCCGC TGTGGATCTCAGTCCCCGTTCTCGACTTCGACAATCAAGCCCATCCAATAGGCGACATTGAAATGTTAGTATACGCAACC CTTCAAGCCAGAGATCCGCAACAACCCATCACAAGTTTCCGTCTCATATATGACGTTTATGATCCTCAACGTGCCAATGC CGATGTCAATGTTTGGGTAAACACTGTTATACAACGCGGGATTGAGAACATTGAAATCGAGCCTGAAATCGAGCTTGAAC TCGATCCTGAATCCGAGCCTGAATTCGATCCTGAACCTACCAAGATTCAGCGTGTAGGTCCTAACATTTGTTTGAGCAGC AAAATTTTCAGTTGCAGAACCCTTGTTGTTCTCAAATTGAAAAGGGTATCTTTGGCTGCTTCTTCTTCCGTTGAGCTTCC CGCGCTCAAATCTCTAAATTTGAATCGTGTTAATTTTGAAGAGCCTCAATATCTCATGGAGCTTCTTTATGGATGTCCAA TACTTGAGGATTTGAAAACATTTGTGATAAGATATGCTCATGATGGCTCTTTTTGTGAGGATAGGGTTAAAATCTTACCC AAATTGGTGAGGGCAGAAATACGTATTGTTCGTATCGAAACTATGGATGGTAATGATGCTAATGTTCTTCTGAAAGCGAT ATCGAATGTGGAGTTTTTGACCATTACACAGGTTCGAATATATTGGATAGAAATGTGTTTAGTTTGTAATTGGTCTTGTT TTTAGAATTCTCATACTTTGTCTTTATAACTAAGTGCAGTTTGAACTTAATGATGCTGTTCCGGAATTTCCTCATTTAAG ACATTTGGGCCTCAGCTTGGAGTTTCATAGCTGTCATTCGGTGATTTTGATGCTTAAGAATTGCCCCAAGCTTCAAAGTT TTATTTTTGGTGGAACTTTTAAGAATGTTCCACCTTACCCTCATTTTGTTCCTGAATGCCTTACTTCATGCTTAACTAAG TGCTATCTTAGATATTACCCAGGATATTTCCGACACACATACCTACAATTTGCAAAATATATTTTGCAGAATTCAACCCA TTTACAGGTCATGAAAATTGGTGATACTTCACCTAGTCCACCTGAAGTGCTGGAGGAGTTAGCTTTGTGCCCAAGGAAAT CTGCATCGTGTGAACTTTCATTTATATGATAGGTTTGTTAGTAGCTGTAAGATGACAGCATGTGTCATTTTTAATTTAAT GCAAACTCTGGATTTGGAGGACATAGATGGTCTAATTACACCTCTTTGTATACCCATTATCTGGTTTTTATTTGATGCTT GACCACTCAACTGGATGTGAGGGTTTAAATGGATTGGAAATTTCTATTTCATATGCTATGCTGGTGATGTACTGTTTTCC TATTGAAAAAGGTAACTTTTTCTTCTTTCTCATGATAGTATTATCACTATTATGACATAATTCTTGGCTAGTGGCCAATC ATGTTATAAGATACCTGCAGGAGCATCAATTCCATGCCTTAATTAGCTGGTACGATTTAGTGATCTACATACTGCAAATT TACATCAGAATCCTTTCTAGTTGTTGTAAGGATTGTATTGTGTTGATGTCTGTCAAAGTAGCTTAGGAAGATATTGTTAA AATTTATCTCATGAACAACAATAACCCTCATAATCTGGTTTTTTATCTAGCTCAAGGACATAGTGTGATCCATATAGCCG ACTTCACTTAATGGGATAAGGATTTTGTCGTTGTTGTTGTTCTTGGGCATAGTAGCTTTCTTTGTGATTCTAACTAGTAA GGAGGAGTAGTTAGTGGGTGTTGTGCATTTGAAATGCTAATAATTT
CDS sequence (LotjaGi1g1v0346700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGACAGGATTAGCAAGTTACCAGATGAACTCCTCTGTCACATTCTCTCATTTCTCCCAACTCAACAAGCAGTTGC CACCAGCATTCTTTCAAAGAGGTGGTTGCCGCTGTGGATCTCAGTCCCCGTTCTCGACTTCGACAATCAAGCCCATCCAA TAGGCGACATTGAAATGTTAGTATACGCAACCCTTCAAGCCAGAGATCCGCAACAACCCATCACAAGTTTCCGTCTCATA TATGACGTTTATGATCCTCAACGTGCCAATGCCGATGTCAATGTTTGGGTAAACACTGTTATACAACGCGGGATTGAGAA CATTGAAATCGAGCCTGAAATCGAGCTTGAACTCGATCCTGAATCCGAGCCTGAATTCGATCCTGAACCTACCAAGATTC AGCGTGTAGGTCCTAACATTTGTTTGAGCAGCAAAATTTTCAGTTGCAGAACCCTTGTTGTTCTCAAATTGAAAAGGGTA TCTTTGGCTGCTTCTTCTTCCGTTGAGCTTCCCGCGCTCAAATCTCTAAATTTGAATCGTGTTAATTTTGAAGAGCCTCA ATATCTCATGGAGCTTCTTTATGGATGTCCAATACTTGAGGATTTGAAAACATTTGTGATAAGATATGCTCATGATGGCT CTTTTTGTGAGGATAGGGTTAAAATCTTACCCAAATTGGTGAGGGCAGAAATACGTATTGTTCGTATCGAAACTATGGAT GGTAATGATGCTAATGTTCTTCTGAAAGCGATATCGAATGTGGAGTTTTTGACCATTACACAGTTTGAACTTAATGATGC TGTTCCGGAATTTCCTCATTTAAGACATTTGGGCCTCAGCTTGGAGTTTCATAGCTGTCATTCGGTGATTTTGATGCTTA AGAATTGCCCCAAGCTTCAAAGTTTTATTTTTGGTGGAACTTTTAAGAATGTTCCACCTTACCCTCATTTTGTTCCTGAA TGCCTTACTTCATGCTTAACTAAGTGCTATCTTAGATATTACCCAGGATATTTCCGACACACATACCTACAATTTGCAAA ATATATTTTGCAGAATTCAACCCATTTACAGGTCATGAAAATTGGTGATACTTCACCTAGTCCACCTGAAGTGCTGGAGG AGTTAGCTTTGTGCCCAAGGAAATCTGCATCGTGTGAACTTTCATTTATATGA
Protein sequence (LotjaGi1g1v0346700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDRISKLPDELLCHILSFLPTQQAVATSILSKRWLPLWISVPVLDFDNQAHPIGDIEMLVYATLQARDPQQPITSFRLI YDVYDPQRANADVNVWVNTVIQRGIENIEIEPEIELELDPESEPEFDPEPTKIQRVGPNICLSSKIFSCRTLVVLKLKRV SLAASSSVELPALKSLNLNRVNFEEPQYLMELLYGCPILEDLKTFVIRYAHDGSFCEDRVKILPKLVRAEIRIVRIETMD GNDANVLLKAISNVEFLTITQFELNDAVPEFPHLRHLGLSLEFHSCHSVILMLKNCPKLQSFIFGGTFKNVPPYPHFVPE CLTSCLTKCYLRYYPGYFRHTYLQFAKYILQNSTHLQVMKIGDTSPSPPEVLEELALCPRKSASCELSFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 35 | 34 | 9.312 | ||
| PANTHER | 2 | 111 | 110 | 5.5E-67 | – | |
| PANTHER | 2 | 111 | 110 | 5.5E-67 | – | |
| Gene3D | 3 | 207 | 205 | 2.3E-16 | ||
| SUPERFAMILY | 3 | 45 | 43 | 2.75E-12 | ||
| Pfam | 4 | 36 | 33 | 4.3E-7 | ||
| SUPERFAMILY | 141 | 315 | 175 | 1.26E-9 | – | |
| PANTHER | 144 | 387 | 244 | 5.5E-67 | – | |
| PANTHER | 144 | 387 | 244 | 5.5E-67 | – | |
| Gene3D | 208 | 386 | 179 | 6.7E-7 | ||
| Pfam | 315 | 361 | 47 | 6.1E-9 | ||
| SMART | 320 | 390 | 71 | 5.7E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0346700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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