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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0348600 |
Transcript ID | LotjaGi1g1v0348600.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Divalent-cation tolerance protein CutA; TAIR: AT2G33740.2 Nitrogen regulatory PII-like, alpha/beta; Swiss-Prot: sp|P93009|CUTA_ARATH Protein CutA, chloroplastic; TrEMBL-Plants: tr|I3SA72|I3SA72_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0348600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81733155..81735023) extracted from Lotus japonicus Gifu genome v1.2.
ACCACTTCCACACTCTTCTCCACTGCTCCTCCATCCTCCGCCGTCTCCTCCTCTGTGATACGGCGTCGTTTACCCCTTGT CGGCGCGTTTTGCATGCTCACTCTAGGGCTCTCCAATTTCTACAGGCCCTTGTATTCCTCTGCTCTCAAAACGGGGTGCG TTTCATCGCTCTTACGGTTTTCGATTCTCTCTGGTTTTCGATTCTCTTGATCTCTCTTTTCATTTTGTTCAATTTCCTCT GTTTCAGATCTAGTTTGGCAAAGAGAAGTTACAGTATTAGAATGGAAGGGAACACCAACAACACCACTGTCCCAAGCATC GTTGTCTATGTCACTGTTCCCAACAAGGAAGCAGGTTGCACGAGGAGCAATGCTTCATGTTCTTTGTTTATTTGTTGTAA ATTTTGTGTCTTTGTTTTGATGTTTGTGTGTTGATTTGTTCTGCAGGGAAGAAGTTAGCTGAAAGCATTGTCAAGGAGAA GCTTGCAGCTTGTGTAAACAGAGTACCGGGTAACAATTTTCTACTCCAGATTGCTAATGTTTCAGTGGAATTTGTGAGGA GCTTCCATAAATTGATTATTGAATGAAATCTATGTATGTCCTTGTTCAGTGATGAGGCACAAATATGATACTGCTGAATT CCTACCATATGACTTAATTTTACTTAAATTTTTGCTGTTACCTAGTTCCCCATGATCTAACACCAGGCGGATGAACTAAA GATATGCTTATATATTAGATTAGTAAGCAAAGACAATGCGCATTAAGGTGTGAACTTCCATTGTGGATTAAAACTTTTGG TGAAAAGACTCACTTCATATTAAGGGTTACTTAGCTTGCATCTAATTCACTTCAAACACTAATATTGACCAATCTATGCA ATTGCTAAATCGTAACCTATAAATAGATTTACCCTGAGGCATGGTCAGAGTTACTTTTTCCATCCTTTATCATGGCGTTA GCTGCGTGCAGGAATTTGACACTTGAATGAGTTCACGACTTGACATCTATCTTCAGTTTGAGTTGTATAATTGTTTGACA TATGCAAATGTAATCATGTCAAGCATCTTTGTGATTGTTCTGGTAGGGAAGAAAGGATTGGATTTGATTGTTGATATGCT CGAGTTGATTTGTGTTGTAACCAAGTTGATTGTATTGTTTGCATGTCTGACTTTTAAAAGCAATGTGTATTATGTCTTGT GCAGGTATTGAATCAGTATATCAGTGGCAGGGAGAGGTATGATCTAAAATATTATCTGTTGACAATGATAACTATTAGGA TATGAAATTACTAATTGGAATAAAATATTTTGTTTTAAAATGTTGTCATCCTAAAGTTCAGAAGTTACAATTTTCTAGTG TGCATTAAGGTTCTTTTGGAATTGTTTAAGAAAATTTACTGCAAAGTATTGTTTGTAACTTGATTTTGCTAGCTTTCTGT TGCAAATTGACAGATCCAAACTGATTCTGAGGAACTTCTGATAATCAAGACTAGGCAATCCCTTCTGGAACCATTGACAG AGCATGTCAAAGCAAACCATGAGTACGAGTAAGGATTCTTTTAAATATCTGGCAATATTGAACTTGATTTGTGATAAAAT GAAAAGTTCTAGTTGCATTTGTTATTTGATCCTAAAAGACAGCTTTAAGAAAGGAACACTTGAACCATATCTGCCAAGAC TGAAGAACTTTGGCATTAGATCCATGTTGAGATAAACTGAGGTGGAATTATGGAGAATAGTAATGCATTTACATGCTTCT GACTTTTTTCTTTTGTCTTTTTTTCAGTGTGCCAGAGGTAATCTCCTTACCCATCACTGGCGGCAATCTTAAATATTTAG AATGGATAAAGGAGAGCACAAGGGAGTGA
CDS sequence (LotjaGi1g1v0348600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCACTCTAGGGCTCTCCAATTTCTACAGGCCCTTGTATTCCTCTGCTCTCAAAACGGGGTGCGTTTCATCGCTCTT ACGATCTAGTTTGGCAAAGAGAAGTTACAGTATTAGAATGGAAGGGAACACCAACAACACCACTGTCCCAAGCATCGTTG TCTATGTCACTGTTCCCAACAAGGAAGCAGGGAAGAAGTTAGCTGAAAGCATTGTCAAGGAGAAGCTTGCAGCTTGTGTA AACAGAGTACCGGGTATTGAATCAGTATATCAGTGGCAGGGAGAGATCCAAACTGATTCTGAGGAACTTCTGATAATCAA GACTAGGCAATCCCTTCTGGAACCATTGACAGAGCATGTCAAAGCAAACCATGAGTACGATGTGCCAGAGGTAATCTCCT TACCCATCACTGGCGGCAATCTTAAATATTTAGAATGGATAAAGGAGAGCACAAGGGAGTGA
Protein sequence (LotjaGi1g1v0348600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTLGLSNFYRPLYSSALKTGCVSSLLRSSLAKRSYSIRMEGNTNNTTVPSIVVYVTVPNKEAGKKLAESIVKEKLAACV NRVPGIESVYQWQGEIQTDSEELLIIKTRQSLLEPLTEHVKANHEYDVPEVISLPITGGNLKYLEWIKESTRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 16 | 153 | 138 | 5.6E-65 | – | |
PANTHER | 16 | 153 | 138 | 5.6E-65 | ||
Gene3D | 43 | 153 | 111 | 4.5E-46 | ||
SUPERFAMILY | 51 | 152 | 102 | 1.52E-36 | ||
Pfam | 52 | 149 | 98 | 2.4E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Response to metal ion | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus. |
Expression pattern of LotjaGi1g1v0348600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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