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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0349300 |
| Transcript ID | LotjaGi1g1v0349300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serpin-like protein; TAIR: AT1G47710.1 Serine protease inhibitor (SERPIN) family protein; Swiss-Prot: sp|Q40066|SPZX_HORVU Serpin-ZX; TrEMBL-Plants: tr|A0A061FCG1|A0A061FCG1_THECC Serine protease inhibitor (SERPIN) family protein; Found in the gene: LotjaGi1g1v0349300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81903335..81905149) extracted from Lotus japonicus Gifu genome v1.2.
AGTATTAGATGTATTTGTTATCCCTCCCTCATTCTAATTGTCAAATCCTAATAATGGCTTCAATCAGAATCAGAGGCATG GTTAACAAAGGTTTGCAGGTAGGAAGATTACTTTCACGAAGTCAAGGTTTTAGAGGTTTCTACAATATTCCATCACATCT TGATAAAACCTTAACAAGCAACCAAACCGACGCTACCCTCAGCATCACAAAGAATTTATTCCTGAAAGAAGAATTTCAGA ACAAGAACGTCGTGTTTTCGCCGTTGTCGCTTTACGTCGCACTTAGCATGGTGGCTGCGGGCTCGGAGGGCCCCACGCTC AATGAGTTTCTCACCTTCCTCCGAGCCAAATCCACCGACCACCTCAACTCCTTCACCTCTAAGGTCGCCTCGGTCGTGCT TCGTGATGGTGCTCACGACGGCGGCCCTCGCCTCTGTTTCAGTAACGGTGTGTGGGTCGAACAATCCCTTCCTCTTATCC CTTCCTACAAACAACTGGTGGCTACTGATTACAAGGCCACCTTTGCCTCTGTTGATTTCAAGAATAAGGTCAGTAAAATA CATAATTTTCTAAATTTTGAGGCTTCATTACCTAATTTTCCAACTGCCTTATGATTTTGATTTTGCATTCATACTGCTTC CTTCTTAGTATATGCAAATTTTGATCAAACATCAATGAACATAGTCACACACTCCCAATTTTTAATCTATTCAAGCATGT ATATATGTTAAATTGATAAACTGTAAACGATATGTATGTCAAACAAGTGCAGAAATTCCTTGTCACAATATCTGCCTTTA TTTATTTGCATACTGATTTTAAATATATGATGATGGTTTCAAAGGCTCATGCAGTGGTCAATGAAGTTAATTTATGGGCT GAAGAAAAGACAATGGGCCTTATCAAGAACATTCTTGATCCGACGGATTTTGATAACTTAACTAGGCTCATCCTTGCAAA TGCTATGTACTTCAAAGGTGCATGGGAAGAGCCGTTCGCTGCATCAAAGACGAGGGACCATGATTTTCAACTTCTTAATG GCACATCAATCAAGGCTCCCTTCATGACCAGCAAGAAGGACCAATTTATTGGTGTTTTTGATGATTTCAAAGTGCTTAGA CTCTCTTATGACCAAGGTAACGATGATCGTCACTTCTCCATGTACATTTTCCTTCCAAATGCAAATGATGGGCTGTCGGC TTTGGTTGAGCAAGTGACTTCTGAATCTGAGTTTCTAGAACGCCATCTTCCTTGTCAAGAAGTGAAAGTAGGTGATTTTA GGATTCCAAAATTTGAGATTTCTTTCGGACTGGACATTTCTAATGTGGTGAAGGAGATGGGACTAGTTTTGCCTTTCTCC GAAGATTATGCAGATTTTACAAAAATTGCGACTCCTCTAGATGAGCCTCCTCTATGTGTTTCCAACATAGTACAAAAGTC TTTTATCGAAGTGAATGAAGAAGGCACTGAAGCTGCAGTTGTGACTGCTATACAAGTGAGGTGTGGGTCTCTAAGGATAC GTTTTTTACCAAAAGTGATAGATTTTGTAGCTGACCACCCTTTTCTCTTCATAATTAGAGAAGATTGGTCTAAAACAATC CTCTTTACAGGACAAGTGCTTAATCCTCTTCATGATTGAAATGATATCATCAATGGCCACTTCGGAGAATAACAAAATCA TTAGTGATTTGAATATTTTTTTGTGATTTTCTCATTATTTTTATTCGTTACAATAGGACTTTAGTTGCTTTAAATGTGAT GAAAGGTAAGACATGTTTAATTTATTCATGTATAATCTCAATAATTCAGTTTAAT
CDS sequence (LotjaGi1g1v0349300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGTCAAACAAGTGCAGAAATTCCTTGTCACAATATCTGCCTTTATTTATTTGCATACTGATTTTAAATATATGAT GATGGTTTCAAAGGCTCATGCAGTGGTCAATGAAGTTAATTTATGGGCTGAAGAAAAGACAATGGGCCTTATCAAGAACA TTCTTGATCCGACGGATTTTGATAACTTAACTAGGCTCATCCTTGCAAATGCTATGTACTTCAAAGGTGCATGGGAAGAG CCGTTCGCTGCATCAAAGACGAGGGACCATGATTTTCAACTTCTTAATGGCACATCAATCAAGGCTCCCTTCATGACCAG CAAGAAGGACCAATTTATTGGTGTTTTTGATGATTTCAAAGTGCTTAGACTCTCTTATGACCAAGGTAACGATGATCGTC ACTTCTCCATGTACATTTTCCTTCCAAATGCAAATGATGGGCTGTCGGCTTTGGTTGAGCAAGTGACTTCTGAATCTGAG TTTCTAGAACGCCATCTTCCTTGTCAAGAAGTGAAAGTAGGTGATTTTAGGATTCCAAAATTTGAGATTTCTTTCGGACT GGACATTTCTAATGTGGTGAAGGAGATGGGACTAGTTTTGCCTTTCTCCGAAGATTATGCAGATTTTACAAAAATTGCGA CTCCTCTAGATGAGCCTCCTCTATGTGTTTCCAACATAGTACAAAAGTCTTTTATCGAAGTGAATGAAGAAGGCACTGAA GCTGCAGTTGTGACTGCTATACAAGTGAGGTGTGGGTCTCTAAGGATACGTTTTTTACCAAAAGTGATAGATTTTGTAGC TGACCACCCTTTTCTCTTCATAATTAGAGAAGATTGGTCTAAAACAATCCTCTTTACAGGACAAGTGCTTAATCCTCTTC ATGATTGA
Protein sequence (LotjaGi1g1v0349300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVKQVQKFLVTISAFIYLHTDFKYMMMVSKAHAVVNEVNLWAEEKTMGLIKNILDPTDFDNLTRLILANAMYFKGAWEE PFAASKTRDHDFQLLNGTSIKAPFMTSKKDQFIGVFDDFKVLRLSYDQGNDDRHFSMYIFLPNANDGLSALVEQVTSESE FLERHLPCQEVKVGDFRIPKFEISFGLDISNVVKEMGLVLPFSEDYADFTKIATPLDEPPLCVSNIVQKSFIEVNEEGTE AAVVTAIQVRCGSLRIRFLPKVIDFVADHPFLFIIREDWSKTILFTGQVLNPLHD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 292 | 292 | 4.7E-23 | ||
| Pfam | 18 | 292 | 275 | 7.0E-70 | ||
| Gene3D | 20 | 236 | 217 | 1.4E-82 | ||
| SUPERFAMILY | 28 | 292 | 265 | 5.5E-73 | ||
| PANTHER | 30 | 293 | 264 | 3.2E-98 | – | |
| PANTHER | 30 | 293 | 264 | 3.2E-98 | ||
| Gene3D | 78 | 287 | 210 | 1.4E-82 | ||
| ProSitePatterns | 265 | 275 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular space | That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
Expression pattern of LotjaGi1g1v0349300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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