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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0349300 |
| Transcript ID | LotjaGi1g1v0349300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serpin-like protein; TAIR: AT1G47710.1 Serine protease inhibitor (SERPIN) family protein; Swiss-Prot: sp|Q9S7T8|SPZX_ARATH Serpin-ZX; TrEMBL-Plants: tr|I1JTG3|I1JTG3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0349300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81903380..81905167) extracted from Lotus japonicus Gifu genome v1.2.
TCCTAATAATGGCTTCAATCAGAATCAGAGGCATGGTTAACAAAGGTTTGCAGGTAGGAAGATTACTTTCACGAAGTCAA GGTTTTAGAGGTTTCTACAATATTCCATCACATCTTGATAAAACCTTAACAAGCAACCAAACCGACGCTACCCTCAGCAT CACAAAGAATTTATTCCTGAAAGAAGAATTTCAGAACAAGAACGTCGTGTTTTCGCCGTTGTCGCTTTACGTCGCACTTA GCATGGTGGCTGCGGGCTCGGAGGGCCCCACGCTCAATGAGTTTCTCACCTTCCTCCGAGCCAAATCCACCGACCACCTC AACTCCTTCACCTCTAAGGTCGCCTCGGTCGTGCTTCGTGATGGTGCTCACGACGGCGGCCCTCGCCTCTGTTTCAGTAA CGGTGTGTGGGTCGAACAATCCCTTCCTCTTATCCCTTCCTACAAACAACTGGTGGCTACTGATTACAAGGCCACCTTTG CCTCTGTTGATTTCAAGAATAAGGTCAGTAAAATACATAATTTTCTAAATTTTGAGGCTTCATTACCTAATTTTCCAACT GCCTTATGATTTTGATTTTGCATTCATACTGCTTCCTTCTTAGTATATGCAAATTTTGATCAAACATCAATGAACATAGT CACACACTCCCAATTTTTAATCTATTCAAGCATGTATATATGTTAAATTGATAAACTGTAAACGATATGTATGTCAAACA AGTGCAGAAATTCCTTGTCACAATATCTGCCTTTATTTATTTGCATACTGATTTTAAATATATGATGATGGTTTCAAAGG CTCATGCAGTGGTCAATGAAGTTAATTTATGGGCTGAAGAAAAGACAATGGGCCTTATCAAGAACATTCTTGATCCGACG GATTTTGATAACTTAACTAGGCTCATCCTTGCAAATGCTATGTACTTCAAAGGTGCATGGGAAGAGCCGTTCGCTGCATC AAAGACGAGGGACCATGATTTTCAACTTCTTAATGGCACATCAATCAAGGCTCCCTTCATGACCAGCAAGAAGGACCAAT TTATTGGTGTTTTTGATGATTTCAAAGTGCTTAGACTCTCTTATGACCAAGGTAACGATGATCGTCACTTCTCCATGTAC ATTTTCCTTCCAAATGCAAATGATGGGCTGTCGGCTTTGGTTGAGCAAGTGACTTCTGAATCTGAGTTTCTAGAACGCCA TCTTCCTTGTCAAGAAGTGAAAGTAGGTGATTTTAGGATTCCAAAATTTGAGATTTCTTTCGGACTGGACATTTCTAATG TGGTGAAGGAGATGGGACTAGTTTTGCCTTTCTCCGAAGATTATGCAGATTTTACAAAAATTGCGACTCCTCTAGATGAG CCTCCTCTATGTGTTTCCAACATAGTACAAAAGTCTTTTATCGAAGTGAATGAAGAAGGCACTGAAGCTGCAGTTGTGAC TGCTATACAAGTGAGGTGTGGGTCTCTAAGGATACGTTTTTTACCAAAAGTGATAGATTTTGTAGCTGACCACCCTTTTC TCTTCATAATTAGAGAAGATTGGTCTAAAACAATCCTCTTTACAGGACAAGTGCTTAATCCTCTTCATGATTGAAATGAT ATCATCAATGGCCACTTCGGAGAATAACAAAATCATTAGTGATTTGAATATTTTTTTGTGATTTTCTCATTATTTTTATT CGTTACAATAGGACTTTAGTTGCTTTAAATGTGATGAAAGGTAAGACATGTTTAATTTATTCATGTATAATCTCAATAAT TCAGTTTAATACTTTTCTCGACTTTTTG
CDS sequence (LotjaGi1g1v0349300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAATCAGAATCAGAGGCATGGTTAACAAAGGTTTGCAGGTAGGAAGATTACTTTCACGAAGTCAAGGTTTTAG AGGTTTCTACAATATTCCATCACATCTTGATAAAACCTTAACAAGCAACCAAACCGACGCTACCCTCAGCATCACAAAGA ATTTATTCCTGAAAGAAGAATTTCAGAACAAGAACGTCGTGTTTTCGCCGTTGTCGCTTTACGTCGCACTTAGCATGGTG GCTGCGGGCTCGGAGGGCCCCACGCTCAATGAGTTTCTCACCTTCCTCCGAGCCAAATCCACCGACCACCTCAACTCCTT CACCTCTAAGGTCGCCTCGGTCGTGCTTCGTGATGGTGCTCACGACGGCGGCCCTCGCCTCTGTTTCAGTAACGGTGTGT GGGTCGAACAATCCCTTCCTCTTATCCCTTCCTACAAACAACTGGTGGCTACTGATTACAAGGCCACCTTTGCCTCTGTT GATTTCAAGAATAAGGCTCATGCAGTGGTCAATGAAGTTAATTTATGGGCTGAAGAAAAGACAATGGGCCTTATCAAGAA CATTCTTGATCCGACGGATTTTGATAACTTAACTAGGCTCATCCTTGCAAATGCTATGTACTTCAAAGGTGCATGGGAAG AGCCGTTCGCTGCATCAAAGACGAGGGACCATGATTTTCAACTTCTTAATGGCACATCAATCAAGGCTCCCTTCATGACC AGCAAGAAGGACCAATTTATTGGTGTTTTTGATGATTTCAAAGTGCTTAGACTCTCTTATGACCAAGGTAACGATGATCG TCACTTCTCCATGTACATTTTCCTTCCAAATGCAAATGATGGGCTGTCGGCTTTGGTTGAGCAAGTGACTTCTGAATCTG AGTTTCTAGAACGCCATCTTCCTTGTCAAGAAGTGAAAGTAGGTGATTTTAGGATTCCAAAATTTGAGATTTCTTTCGGA CTGGACATTTCTAATGTGGTGAAGGAGATGGGACTAGTTTTGCCTTTCTCCGAAGATTATGCAGATTTTACAAAAATTGC GACTCCTCTAGATGAGCCTCCTCTATGTGTTTCCAACATAGTACAAAAGTCTTTTATCGAAGTGAATGAAGAAGGCACTG AAGCTGCAGTTGTGACTGCTATACAAGTGAGGTGTGGGTCTCTAAGGATACGTTTTTTACCAAAAGTGATAGATTTTGTA GCTGACCACCCTTTTCTCTTCATAATTAGAGAAGATTGGTCTAAAACAATCCTCTTTACAGGACAAGTGCTTAATCCTCT TCATGATTGA
Protein sequence (LotjaGi1g1v0349300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASIRIRGMVNKGLQVGRLLSRSQGFRGFYNIPSHLDKTLTSNQTDATLSITKNLFLKEEFQNKNVVFSPLSLYVALSMV AAGSEGPTLNEFLTFLRAKSTDHLNSFTSKVASVVLRDGAHDGGPRLCFSNGVWVEQSLPLIPSYKQLVATDYKATFASV DFKNKAHAVVNEVNLWAEEKTMGLIKNILDPTDFDNLTRLILANAMYFKGAWEEPFAASKTRDHDFQLLNGTSIKAPFMT SKKDQFIGVFDDFKVLRLSYDQGNDDRHFSMYIFLPNANDGLSALVEQVTSESEFLERHLPCQEVKVGDFRIPKFEISFG LDISNVVKEMGLVLPFSEDYADFTKIATPLDEPPLCVSNIVQKSFIEVNEEGTEAAVVTAIQVRCGSLRIRFLPKVIDFV ADHPFLFIIREDWSKTILFTGQVLNPLHD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 22 | 426 | 405 | 1.27E-100 | ||
| PANTHER | 41 | 427 | 387 | 4.1E-142 | – | |
| PANTHER | 41 | 427 | 387 | 4.1E-142 | ||
| SMART | 49 | 426 | 378 | 8.7E-76 | ||
| Pfam | 50 | 426 | 377 | 1.4E-94 | ||
| Gene3D | 63 | 370 | 308 | 2.8E-118 | ||
| Gene3D | 212 | 421 | 210 | 2.8E-118 | ||
| ProSitePatterns | 399 | 409 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular space | That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
Expression pattern of LotjaGi1g1v0349300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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