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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0352500 |
| Transcript ID | LotjaGi1g1v0352500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein mizu-kussei 1; TAIR: AT5G42680.1 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617); Swiss-Prot: sp|O22227|MIZ1_ARATH Protein MIZU-KUSSEI 1; TrEMBL-Plants: tr|I3SPZ3|I3SPZ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0352500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82390632..82391342) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCATCTGTGCATTCTAGTCCCTGCTACCCAATGGAAAACCCTGCAATAGCATCACTACTCCGCCACACAACAACAGC AGCAGCAACAACAACAGGGGGAAAACGAAGCAAATTCTCCACAGGAGGACTCTTAAAAATGTTCAAGCTTTTTCCCATGC TAACCTCAGGCTGCAAAATGGTTGCTTTGTTAGGAAGACCACGCAAGCCAATGCTCAAAGACAGCGCCACGACAGGAACA ATCTTCGGCTTCCGCAAAGGGAGAGTGAGTTTAGCTATACAAGAAGATACTCGGCAAATGCCAATTTTCCTCATAGAGCT TCCAATGCTGACAAGCGCTCTGAACAAGGAAATGGCCTCTGATATAGTGAGGATCGCACTCGAGAGCGAGACGAAGAGCA ATAAGAAGAAGGTGATGGAGGAGTTTGTGTGGGCAGTGTATTGCAATGGGAGGAAAGTTGGGTATTCTATAAGGAGGAAG CAGATGAGTGATGATGAGCTTCATGTTATGCAACATTTGAGAGGGGTTTCAATGGGAGCAGGGGTGCTTCCTAGTGATAA TAAGGAAAGTAATTCAGATGGGGAAATGACCTATATGAGAGCAAGGTTTGAGAGGGTGATTGGTTCAAAGGATTCAGAAG CTTTGTATATGATTAATCCAGATGGTGCTCAAGGACCAGAATTGAGTATCTTCTTTGTTAGAGCTCACTAG
CDS sequence (LotjaGi1g1v0352500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATCTGTGCATTCTAGTCCCTGCTACCCAATGGAAAACCCTGCAATAGCATCACTACTCCGCCACACAACAACAGC AGCAGCAACAACAACAGGGGGAAAACGAAGCAAATTCTCCACAGGAGGACTCTTAAAAATGTTCAAGCTTTTTCCCATGC TAACCTCAGGCTGCAAAATGGTTGCTTTGTTAGGAAGACCACGCAAGCCAATGCTCAAAGACAGCGCCACGACAGGAACA ATCTTCGGCTTCCGCAAAGGGAGAGTGAGTTTAGCTATACAAGAAGATACTCGGCAAATGCCAATTTTCCTCATAGAGCT TCCAATGCTGACAAGCGCTCTGAACAAGGAAATGGCCTCTGATATAGTGAGGATCGCACTCGAGAGCGAGACGAAGAGCA ATAAGAAGAAGGTGATGGAGGAGTTTGTGTGGGCAGTGTATTGCAATGGGAGGAAAGTTGGGTATTCTATAAGGAGGAAG CAGATGAGTGATGATGAGCTTCATGTTATGCAACATTTGAGAGGGGTTTCAATGGGAGCAGGGGTGCTTCCTAGTGATAA TAAGGAAAGTAATTCAGATGGGGAAATGACCTATATGAGAGCAAGGTTTGAGAGGGTGATTGGTTCAAAGGATTCAGAAG CTTTGTATATGATTAATCCAGATGGTGCTCAAGGACCAGAATTGAGTATCTTCTTTGTTAGAGCTCACTAG
Protein sequence (LotjaGi1g1v0352500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSVHSSPCYPMENPAIASLLRHTTTAAATTTGGKRSKFSTGGLLKMFKLFPMLTSGCKMVALLGRPRKPMLKDSATTGT IFGFRKGRVSLAIQEDTRQMPIFLIELPMLTSALNKEMASDIVRIALESETKSNKKKVMEEFVWAVYCNGRKVGYSIRRK QMSDDELHVMQHLRGVSMGAGVLPSDNKESNSDGEMTYMRARFERVIGSKDSEALYMINPDGAQGPELSIFFVRAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 235 | 229 | 2.5E-114 | – | |
| PANTHER | 7 | 235 | 229 | 2.5E-114 | ||
| TIGRFAM | 77 | 234 | 158 | 5.4E-72 | ||
| Pfam | 78 | 234 | 157 | 5.5E-70 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Hydrotropism | Growth or movement in a sessile organism toward or away from water, as of the roots of a plant. |
Expression pattern of LotjaGi1g1v0352500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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