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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0354000 |
| Transcript ID | LotjaGi1g1v0354000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT5G42700.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q69V36|Y6944_ORYSJ B3 domain-containing protein Os06g0194400; TrEMBL-Plants: tr|I3SCU0|I3SCU0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0354000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82576596..82581942) extracted from Lotus japonicus Gifu genome v1.2.
TCATCAGTGAGTGTTGGCGGTGAAAATGGTGGCGAAATACGAAGAGTCTCGCCGGAAAAGATTGGAGGAGAACAAGAAGA GGATGGAGGCTCTCAACCTCCCTCAGCTCTCTCAAGCTCTTCGCAACTCCCCTTCTCCCAAACCCTCTCCGGTTAGTTTC AACCTCTCTCTTTCTCACCGTCTCTTCAGTTTCCATTCTGATTTTCCGATTCCACTTTCCGATCACCGCCGTGCTTTTCA TGTTTCAGCTGAAGCAAGTGAAATCTCGCACCATCCAGAAAGACCTCGTTGTGGTGAGGAGGTCCGGCCGTGTCGCCAAC ATGCCCGCTCCTGTTTACAAAGAAGTAAACTCACCACCCTCTCTACCTTCCATCAATCACTCTCTCGCTCTCGCTCTCAC TCTCGCTAATTGCCATTTTCTTTTTTCTATATTACACAGATTCTTATTGATAGCGTGAAGATACCTCGAATTAGAAGGTT TGTTTGTTTTTGTGAATGGAGTGGAGTGTCTGCTTCTTCTTTCGTTTGCTAATGTATGTGCATTTTTCTATTTAATGAAC CTTATGCTTGTAGGGCTTATACGAATACGAGTAAGTACAGGGATTATTCGAATCGGGTGTATGCGTCGATGGAAGACAGA GAGGAAGCTATGGAGAAAGCTGATAAGTTACTTGAGGATTTAGGTTCTGATCATCCAGCTTTCATCAAGTCAATGCTCCA GTCCCATGTCACTGGTGGATTCTGGCTGGTAATTCAGTTTCTGGGGTTTCACTTTTTGTCAATGTTATGCTCCCTTTTAT TGACACTTTATTATTCCTTCTGAAATGGGGTTCAGCTTCATGAACCATTTACTTCAAATCAACATATTTGTAACTTATGC TATGTAGCTTATTTTCATGTCTATTCACTTGAGCCATTCCTTTTCTAAGATTTGGCTCACTCACTTTAGAGTAAGCATCA TAACTATTAATAGTGATTGCCTGCCTTGAAAAAGACGATAAAATAACTCGGTCAATGGTTGTGATGCTTACTTTATTCTC TAAAGTGAGTGGAACTTTAAAGGAGCCAAACCCCCCTTTTCTAACTAATTGTAACTGAGTAGTTGCATCATAATAACTAA CTACAATCTAGTGTAGCAGAGTCTAGACTAGTCTCTAGACTCCAATACTGGTTGAGTTGGCAAGACATGCGAGTCAAGAA TAAAATGCATCGACTGCAATCAACTAGTAAGGTGGACTAGAGCTTGGTATTTTGTCTCAGAGGAAGATATAGAAATATTA GCTTGTTTCTTAGATTTCCAGGAGACCAAGGATGCCCCTAAACAATATTTAGTAATTAACCTTCTTGAGTCAGGGCAGCC TAATAGAACCAGTAATGGAAGAACTCTGAATTGCTGGTGGGAAAGAAAAAAGGCCTTTTTATGAGGGGAAACTCTTGAGA TAGTTAAATATGCGGATCACTGCAGGGACAAGGAGTGATCCACAACTGATTGAGTATATTTCTTAATAAGAGTTTGGGAC AGTTTGAGGCAATAGAGAGATTTATGCAGTCACATACTTTGGTTGGATCAACTGATCGGTAACTGGCAACTGTCTGTTAG TAAGGATTAGTTACTAGTTAGCTTAACAGTTAGTTAGTGAATGAGTTAGTTAGAGAGAGTGAGAGAGGAGAGACTATAAA TAAGAGGGAAAGGGGAATAAGAAGTAGGGCTAGATTGTAATCAGGGATATATGGGGAGAGTGCTGGTCTCTAGATTTTAT TTCTATTATTCTGTATTTGCTGGTTCCTATCATGTGGGTCACCTGGAAGAACTTGTTCAAGGAACTACACTCTAGCTAAT GTGATAGCAAGCAGGATTCTATCATGGGGATCACCTTGAAGAATTGCATTATTTACATCCACTTGATCAAGGAACAACTA CCCTCTAGCATGAGTGATAGCAAGCAGGATTCTTACAAAGTTATAGCAGTGAGGCTGCAGGAGAAAATGCCCCAAAGTAC TCCCATCAGCCTTGTACTTGATTTTAATATTCTATATCATTTGCAACCAATTTGGTGCTTTCTCGGAGGAAGAGAAACAA TGTGACCAAGTGATTTTCTCAAGAGCATCCAACATTCAAATTTAAAGCTTGCTGTGCCTTTGGTTTTGTCTTGGACTCTT GGAGGGAAAAAAATTGGTATCCTGAGGAACATTTTGAGTAAGATAAAAATGAAGTAGATATTGAAGGAATAATGTTATTG GTCATCGAAGATGTTACAATGGTAATCTTTAAATTTAAAATAGCTTGGGGTGTTTCTGGTGTGGGTAGACTGTCTGGTGT TAGGTGGCTGAGGTTGTGATTCTATGGAGTTGTGAGGTAAAGAGGTTAAGGTGATCGAGTCAAGAATGGAAGGAAAAAGA TCAAGGTTCAGGTCAGTAGATGGGAATGCAGACTGTGGAATAGCAGGCTGAGTTTGTCCAGAATTGGTTTCATCACTGGC TGGTGCAAAAGGAAATCTACTCATAGAAAATGACATTGTGAGATAAGATTTGATAAGAACCTAGATTGCAATGCAACCTT GAACCTAGCATAAAAAATATTACAAACAGAAAATTTAGGAGTAACTTGTGATGGCATACCAAGTCCGAACAAGCCACCAT ACATATTAGCTGAACCTGTCGTCTTTTTAGTTGAAATATTACAATTACCAACAGAAAATTTAGGAGTTACTTGTGATGGC ATACCAACTACAAAGTATGAACAACCCACCATGCATATTAGCTGAACCTATAGTGTTTTTAGTTGAAATCTGTTTAGTAA GATGAATTATTATGAAAACAAGGAAACAATTCAGAGTTTGAATCAATTTTTTTACAGAAACCAAGTTGACCTTAAATTCA GCATCACATTAGGTGTAATATTTTGTTATTATATATCTTTTTAAGACAATCATATTAGGTTGAATCTTGATATTTTATGC ATAATTCGTTTTTGATATTTTTTGTAATTGCAAGTATTTATTGAGACAGAAATGTTAAGTGCATTTTGACCCACAAATTA TATTGGGTTAATCAATTTGCCAATCCTTGACAACAGGGACTTCCATGCCATTTCTGCATTGACAACCTTCCTAAACAGGA TGAAATGATTACTTTGATTGATGAGGATGGGGATGAGTATCCAACAGTATATTTGGCTCGCAAAAAAGGACTCAGTGGTG GATGGAGAGGCTTTGCGATTGCTCATGACCTAGCTGACGGGGACGCTTTGATTTTTCAATTAACTAATCGCAGTACATTC AAGGTGATTAAGAATTGATGATGCTCATTCATGACTTAATGTTAACACATGAATCATAGTGAAAAAAAACTTACCTGTAT GTGACTAAATAATGAAGTCTTTGACCGTTTATTTTAACTCTTGTTGGCAATATTTTTCAATCCATAAGCTGTGGTATCAA TATTTATACACCATTTTAGTTATTTCAAATGTTACGCAAGGGTTTTAAGGTTTTTATAATAAACAATTATGATCTTTTAA TTATTAATATCTTAAATTTTGTAGCTTTGTTAAATACTTTTTTTTTATATAATTCCTTAGTATGTATCCTTAGGAATTAG CAAGATACTCGTTATTTAGTTTTCTTCTCTGACATGTTCCCTCTGAGCTCTCTATCAAGCAATAGCATGAGTTTTTGATG GCTATAGGTGAATGATTCAATAAAAAAACTCAAGATAATAGAATAATTATAAATTTTAATGTACTTTCTGCAGCCTAAAT ATATGTTCTCTTCCAGGTCTACATTATTAGAGTGGACAGCCCTTCAGAGGATACAGCTTAAGTGAATGGCACTTGGAGAT TGGAGCCAGAAATATTAAGGTATTACTTGCTTGGCAAACATAAACATTCAAAATTATCTCCTCAGTAAGATGGAAATGGA ATTATAATTTTACTGTTTTTATATTATTTTATTTTTTTATTCCTATTACATGCCAACAACTTGTTTCTACAGTACGGGGG ATAGTTTTGTACCATTTGATAGTAGTGCCATGGAATTTTTTTTCATGAGTAATTATACTTAGACATACAAATACACTCAA TAGTCAATAGACATCCCATTTTTCCTTTATTTATCTCTTATAATGTATATCATATATCCCATTCACTACTGTTATTGGAT GCATGCATTGTGCACATTTCTATCAAATATTTTCCTTTCATGGTTTGGGGCATGGATTTTCCTTAACTACATTTGAGTGG TGAAAATGTAGTCAAACATTTTCCTCTGGACATGAATTCTTTTGGGGCCAAACTGCCATTAAAATGAAAAAAATTGATCT TAAGAGTCATGCTTATCACAAAAAATATAAGAAAGTCCATAGGAAAAGAATAGAGAAGATGATCCTTCTGGCAAAGCCAA TCCGGCGTTCTGTTCGCTTTCATGGTACATAATAACCGTCCTTACTGAAGTAATCCAATACATAAAAGTGATTGAATGTG TAGTGATGAAATAAATGAGATGATGATGTAGATTATGAAAGAAACCACTATCATTTTTAATAATATTTAGAGGTAATTAA ATTGATGCAATTCAGTGAGATAATGATGATGATGAAGACTTGTATCGATCTGCAAAGGCTTACTTTGCATTAAGCTTGAA ATGTTTGAATACTTACAACAATCAATCATGTCCGAGTACATTGGTTTTCATGTTTCTTAGTTGCTTTTGAGGGTTAGGGG TTTAGGCACACAGCCAATTTTCTCATCACATTCTGTCTGGTTCTTTTGCGGTTGCAGAAATATTCAAACAAAACTTATGT TTGTTGATTATGCGCCTGTATAAAAGTTGCATAAACAGACCTAAAAATTATGCTTGTTCTTATATGCATTTTGATTCATG AGCTGTGAAAGTTTGCTTTTGCTTCAGTTTTAATTGATTTCTTCTGGTACCTGAGTAGCATGAGTGGTGCTTTCTCATTA ATACCTCTATTTATTTATATATTTCTTTTTTCTCTTGCAGGTAGACACTGATATGGTTAAGTTCCGTCTGGGGCTCAGTT TTTGGGGTAAAACTTGTAGTTTGTCTAACGTATGTATGATGTTTAACTTGTAACTTCATCTTTTGTAGTAGAGCTAACGA TTGATGTTTAGGAACTGGCTCTTCTGCACGTATATATAAATTAACAGAGCGACCCTATGTGTGGGACCTTACTGAATCTG ATCTATTAAGAGCATGTAGTTTTAGATTGAAATTGAAAGCTCATTAACACAGGGCCCTATCCTTTTACCACTACGACCTG CAATTGATGGGTAAACATAATATTTACTTTGAAAACAATAAAAAATGACAAAAATATTGTTTTATAT
CDS sequence (LotjaGi1g1v0354000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCGAAATACGAAGAGTCTCGCCGGAAAAGATTGGAGGAGAACAAGAAGAGGATGGAGGCTCTCAACCTCCCTCA GCTCTCTCAAGCTCTTCGCAACTCCCCTTCTCCCAAACCCTCTCCGCTGAAGCAAGTGAAATCTCGCACCATCCAGAAAG ACCTCGTTGTGGTGAGGAGGTCCGGCCGTGTCGCCAACATGCCCGCTCCTGTTTACAAAGAAATTCTTATTGATAGCGTG AAGATACCTCGAATTAGAAGGGCTTATACGAATACGAGTAAGTACAGGGATTATTCGAATCGGGTGTATGCGTCGATGGA AGACAGAGAGGAAGCTATGGAGAAAGCTGATAAGTTACTTGAGGATTTAGGTTCTGATCATCCAGCTTTCATCAAGTCAA TGCTCCAGTCCCATGTCACTGGTGGATTCTGGCTGGGACTTCCATGCCATTTCTGCATTGACAACCTTCCTAAACAGGAT GAAATGATTACTTTGATTGATGAGGATGGGGATGAGTATCCAACAGTATATTTGGCTCGCAAAAAAGGACTCAGTGGTGG ATGGAGAGGCTTTGCGATTGCTCATGACCTAGCTGACGGGGACGCTTTGATTTTTCAATTAACTAATCGCAGTACATTCA AGGTCTACATTATTAGAGTGGACAGCCCTTCAGAGGATACAGCTTAA
Protein sequence (LotjaGi1g1v0354000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAKYEESRRKRLEENKKRMEALNLPQLSQALRNSPSPKPSPLKQVKSRTIQKDLVVVRRSGRVANMPAPVYKEILIDSV KIPRIRRAYTNTSKYRDYSNRVYASMEDREEAMEKADKLLEDLGSDHPAFIKSMLQSHVTGGFWLGLPCHFCIDNLPKQD EMITLIDEDGDEYPTVYLARKKGLSGGWRGFAIAHDLADGDALIFQLTNRSTFKVYIIRVDSPSEDTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 3 | 227 | 225 | 9.3E-102 | – | |
| Coils | 3 | 23 | 21 | - | – | |
| PANTHER | 3 | 227 | 225 | 9.3E-102 | – | |
| MobiDBLite | 27 | 47 | 21 | - | – | |
| Coils | 106 | 126 | 21 | - | – | |
| Gene3D | 106 | 222 | 117 | 2.5E-25 | ||
| SUPERFAMILY | 124 | 220 | 97 | 2.55E-24 | ||
| CDD | 128 | 219 | 92 | 6.28635E-27 | ||
| ProSiteProfiles | 130 | 221 | 92 | 12.323 | ||
| SMART | 130 | 221 | 92 | 1.9E-20 | ||
| Pfam | 130 | 219 | 90 | 8.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0354000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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