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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0354000 |
| Transcript ID | LotjaGi1g1v0354000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT5G42700.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q9FMZ4|Y5270_ARATH B3 domain-containing protein At5g42700; TrEMBL-Plants: tr|I3SCU0|I3SCU0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0354000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82583435..82587843) extracted from Lotus japonicus Gifu genome v1.2.
GGGGAAGTGAGAAGGCAACGGTCGACAGGGCAGTAGAGAATATTTACATATAAATTTCAAAACCTCTTCTTCTTCTTCGT ACTATCATTGAGCTAGTGTACTGTTGGCGGTGAAAATGGTGGCGCAATACGAAGAGATTCGCCGGCAAAGAGTGGAGGAG AACAGGAAGAGGATGGAAGCTCTCAACCTCCCTCAGCTCTCTCACGCTCTTCGCAAATCCCCTTCTCCCAAACCCTCTCC GGTAAGTTCCAACCTCTCTCTCACCGTCACTTCAGTTTCCATTCCAATTTCCCGATTCCACTTTCCGATCACCGCCGTGC TTTTCATGTTCCAGCTGAAGCAAGTGAAATCTCGCACCACCCAGAAAGAGCTTGTTGAGGTCAGGAGGTCCAGCCGTGTC GCCAACATGCCCACTCCTGTTTACAAAGAAGTAAACTAACCTCTCTCTCTCTCTCTCTCTCTAGCTTCCATTATTTTCTG GCTGTTACTAACCGCCACCATTTTCTTTCTCTGTCACACAGGTGTCTGTTGATACTGGGAAAATGCCTCGAATTCGAAGG TTAGGTTATTTAATGTTATGGAAATGGATTTTTCTTTTTATTGTGAGCTTAGTAATGTATATTTATGTGTATTTTTTGAT CTCATGGTTTGTAGAGCTTACAATAAGCATAGGGATTATTCGAATCGGGTGTATGCTTCAGATGAAGACAGGGAGGAAGC CTTTGAGAGAGCAGAAAAGTTACTTGAGGATTTAGGATCTGAATTTCCTGCCTTCACCAAGCCAATGCTTCAGTCCCACG TCAGCGGGGGATTCTGGCTGGTAATTAAGTTTCTAGGGTTTCACTTTTTTGTCCATGTTATGCTGCATTTTTTTATGTTC AAATCATCATATTTGTGACTCATGTAGCTAATTTTTCATGTCTATTCACTTAGCCATATCTTTTTCACACAATGCCTGGA CCGGGACTCTGCCTGGTTTAAGACATCCTTTGAGAATTAAATCTTACTTTATGTAATGTTTACTAGAAATATTGAAGGTA AATTGTTGGGTAGCTTGACTTCAGTCTACTAGTTTAAGCTAAATATGCCCTTGAACTTAATGGGAGACGAGTGCTCTCTT TGCTTGATTAATAGGGCTTCTTTATAGAAATAAATGCATATTTTAATTAGAGTTCTTAGTGCGTTTACATAAAAATTATT TGGGGTTTAAACCAAATTTCATATTATGGTTATTTGTTAAAGATGGAATTTAGACAATGTTGTTAATGGCGGATGGTGGA CGATGGCGGAGAGCTAAAAACCCGCCATATTTGACAAATAAAGATGGCGGGATATCGGTCATGGCGGAGAGCCAAAATTC CACCATGAGATTCCGCCATGGCAGATATTTTATAACACTGAATTAAATTGAGGACAAATCGATAAACTTTCCTTTTCAAA TTACCATGTTTAAGGGATGTTAGAGAAGTATTGACAGTTGGATGGAGTTGTTAGTGAGAGGGTAGTCTGTTAAGAAGTTA GGTGAATGGTTAAATTGGAGGGAACTGAGAGGGTGTTCTTGAATAACATCAGTTCCGTTCTTCTGCATTGGCCGGTTCAA TGTAAACAAGAAGCACAGTGAATGAATTGCCATTAGTAATCCGCTGCTGATTGAGTATATTTCTTAAGAAGTGTCTGAGA CAGTTTGAGTACCCCTGCCTACTTGATTGCTTGAGGCTATAGAGAGATTTATGGAGTCAGCATACTTTGGAGGGATCGGC TGAGCGAGGGTTAGTTAGCATGACAATGATTTAGTTAGTCAATGAGTTTATTAGAAAGAGTGTAGAGACACTATAAATAA GAGGGAAAGGGGAATAGGTAGGGGCGTAGGGTATCTTGAATAACATCAAAACAATGCAGGCAGGAGGAACTCCATGAAGA AATGCATTATTTACATTTACTTGTTCAAGGAACTAGCCTCTAGCTACTGTGATAGCAAGTGGCATCTTACAAAATGTATC AATTTTCCTTTCTTGATCATTATGAGAATGAGATTTTCTAGAAATATATGGCAATTTTCTTTGTTTAGTAATGTGGCATG CATTATGTGGTGGACCAACAAAATAAAGGGAAACTGATTATAAAGGACCTTGAACCTAGCATCAGAAATATGCTCTAGTC TTTGATGTCACAGTGAAGCATCATTCCTTACGTATGAACAACAGAAACTTGTGATGGCATACTAAGTATGAACAACCACC ATGTATATTAGCTGAACCAATCGTCTTTTGGTAGAAATATGTTTAATGAGACAAGAATTATTATGAAAGTCAAGAAAACA ATTCAGACTTTGTATCAATTTTGTTACAGAAACCAAGTTGACCTTAAATGCGGGAACATGTTCGGTTGAATAATTTATAC ATGATTTGTTTTTATATTTTTCGTAATTGCAAGTTTTGTCTCGTGACAGAGAAATGTTAAATGCATTTTGACCCACAATT ATTTATATTGGGCTAATCATTTCGGCAATCCTTGACAACAGGGCCTTCCAGTCCATTTCTGCAGGAAGAACCTACCTAAA CAGGACGGAGTGATCACTTTGATTGATGAGGATGGTGATGAGTATTCAACAATATATTTGCCTCGAAAAACAGGACTAAG TGGTGGATGGAAAGGTTTTGCAGTTGCTCATGACCTAGCAGACGGGGACGCTTTAGTTTTTCAATTAATCAAACGCACTG CATTCAAGGTGATTAAGTATTGATGATGGCTCATTCATTCCTTAGTGTTTAACCCATGAATCATATAATGATATTCACGA ATTTTAATTTGAATTTTTTCACAAAAGGAAGTAGTAAAAAAACCTGTGTTTGACTAACAATGAAGTCTTTGGCCTTTTAT TTTAATTTTTGTTTGATATTTTAGTCCATATGCTGTAGGGTTTCTATGGTCATTAGAATAAACTTCAAAATTTTGATTGT TTTTTATTTTTAATTTATTATTTTAGAATTTTGCTATATGTTTTTATTTGTCAATTCCTTAGTAAGTATCCTTAGGAATT AACAAGATTCTGGTTAATTAGTTTTCTTCTCTTACCATGTGCTTTTTGGGCTCTCTATAAAGCAATTTTTGTATGAGTTT GATGCCTAGAGGTAGAATCATTAAAAAAATAAAAAGACTCAAGATATGAATTAAAAATCAATAAAATAATTATAATTTTG GTATGATTTTCAGCAACTTAAATATATATTTTGCTAAATTTTTTTTTCCAGGTCTATATTATTAGAGTGAACAGTCCTCC AGAGGGTACCACAGCTTAATGGCACTTGGAGATTGGAGCAAGAAATATTAATATAGGTATTATTCTTTTTGGCAAACATA AATTCTATCCTTAGTTAGATGTAAAAATAATTTTATTTCCTTTTTTATATTTTTTCTTCCTCTAGGAATACCTTTTGTTG AAATGAAATTAGAATCACCGGATAACAACTTGCTTCTTCTTGATGTGTGTATAGTTTTGGGGTTTAGTCCTACACATTTT GGGTACTGGACTACTGGTGCCATGAAATGGTGTTTTCATGTTTGGAACTCAAGTGATGAAAAATGTAGTAAACCCAGTGA TGTGTAATGGGACATGAATATTTTTGGGGAATAGAATCTGGGAAAGCCCATAGGAGAACAAAAGAGAAGATGATCCTTCT GGCAATGCCACTTTGGTGTTCCGTTGGCTTTTACTGATTGCGAGCTTAATGCCTTCAAGTGTTAGCCTTTGCTGAGGACT GAGGTATATCATCCTTAATTAACTCTAAAAATTATTAAAAATGACAATAGTTTCTTTCATAACCTTCATGGTTAAGTGTC ATCTCGCAAAGGCTAACACTTGAAGGCATTAAGCTCGCAATCAGTAATATTTGAAGTATTATTTTCTTTCGTAGGGATTA TTTCAACAATGAATTGTTTTTCATTTTTCTTAGTTCCTTCCAAGGGTTAAGGGTTTAGGCACACTGCAAAATTTCCCACC AGTTTGCAGAAATAGTCCTATAAAACCTTTGCATCTTGATTCTTGAGCTGTGAAAGTTTGGTTTTGCTTCAGATTTAATT TGATTTCTGATTTCTTCTATCTGAGTGGTGCTCTCTCATAAATTCCTCTACTTATTCATTTGCTTATTTTTTCTTTTGCA GGTTCTATATGGTCAAGTTCCGTCTTGGAAGTCTTGGGTTTAGTTTTTTGGTGTAAACTTGTAGTTTTTCTAAACCCTGA TATTTAACTTGTAATTTATCTTTACAAGTATTAGGAACTGGCTCTTCTGGATGTATAAATGAACAATGAACACAACGACC CTTTGCCGGGCTTTTTTTGGATCTGACCTATTAAATATAATATATAAACAGCGTTATTTGAAAATAAATAGGTTTTTATT GAATATTTG
CDS sequence (LotjaGi1g1v0354000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCGCAATACGAAGAGATTCGCCGGCAAAGAGTGGAGGAGAACAGGAAGAGGATGGAAGCTCTCAACCTCCCTCA GCTCTCTCACGCTCTTCGCAAATCCCCTTCTCCCAAACCCTCTCCGCTGAAGCAAGTGAAATCTCGCACCACCCAGAAAG AGCTTGTTGAGGTCAGGAGGTCCAGCCGTGTCGCCAACATGCCCACTCCTGTTTACAAAGAAGTGTCTGTTGATACTGGG AAAATGCCTCGAATTCGAAGAGCTTACAATAAGCATAGGGATTATTCGAATCGGGTGTATGCTTCAGATGAAGACAGGGA GGAAGCCTTTGAGAGAGCAGAAAAGTTACTTGAGGATTTAGGATCTGAATTTCCTGCCTTCACCAAGCCAATGCTTCAGT CCCACGTCAGCGGGGGATTCTGGCTGGGCCTTCCAGTCCATTTCTGCAGGAAGAACCTACCTAAACAGGACGGAGTGATC ACTTTGATTGATGAGGATGGTGATGAGTATTCAACAATATATTTGCCTCGAAAAACAGGACTAAGTGGTGGATGGAAAGG TTTTGCAGTTGCTCATGACCTAGCAGACGGGGACGCTTTAGTTTTTCAATTAATCAAACGCACTGCATTCAAGGTCTATA TTATTAGAGTGAACAGTCCTCCAGAGGGTACCACAGCTTAA
Protein sequence (LotjaGi1g1v0354000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAQYEEIRRQRVEENRKRMEALNLPQLSHALRKSPSPKPSPLKQVKSRTTQKELVEVRRSSRVANMPTPVYKEVSVDTG KMPRIRRAYNKHRDYSNRVYASDEDREEAFERAEKLLEDLGSEFPAFTKPMLQSHVSGGFWLGLPVHFCRKNLPKQDGVI TLIDEDGDEYSTIYLPRKTGLSGGWKGFAVAHDLADGDALVFQLIKRTAFKVYIIRVNSPPEGTTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 224 | 222 | 1.1E-106 | – | |
| PANTHER | 3 | 224 | 222 | 1.1E-106 | – | |
| MobiDBLite | 14 | 52 | 39 | - | – | |
| Gene3D | 102 | 219 | 118 | 1.0E-25 | ||
| SUPERFAMILY | 121 | 218 | 98 | 1.51E-24 | ||
| CDD | 125 | 216 | 92 | 3.77401E-29 | ||
| SMART | 127 | 218 | 92 | 5.2E-25 | ||
| Pfam | 127 | 216 | 90 | 1.8E-15 | ||
| ProSiteProfiles | 127 | 218 | 92 | 12.393 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0354000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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