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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0355300 |
| Transcript ID | LotjaGi1g1v0355300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit; TAIR: AT1G45230.1 DCL protein (DUF3223); Swiss-Prot: sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic; TrEMBL-Plants: tr|I3S0R7|I3S0R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0355300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82672630..82677907) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGATATGGGCCTTCCTTTAGAAGAAACTTATGGGTTGCCCAAGTTTTAGACCCAGCTATTGTTGGGCACTTGGGCTA TCAACAAAAAATGAAATTTTCTTCTTTATCCTGGTAAGGTTTGCTCTGCACTGAGAGCGAGTGAGCATGCTCCACCTCGC AGATTTTGATAACAAACAAACCATGTTTCAATAATTGAGGTTTTTCATTCAGACATGGCTTCTTCATCTTCTTCTCCACT GTCCCCAACACAGTCACATATCCACTCCCTCGGTAACCCTTCTTCCTCTTTCCGCTCCCCTCCGCTCATTCTATCTTTCC GTTTCTACTGGAGCGCCTCGTTGCCACTTCACACTCGTCTCTCCGCTCTCAAAGCTGCTGCTGCTGCTGCTTCTTCTGAT GCTGCTGACAATTTGCTTCGGAAACCGCTAATTACTCCGCGGAAGGACCCAGCTGGAGTTTTGGAGGAACATGGGTATGC CTATGAAGAAGAAGATGATGAAGAAGAAGAAGAGGAAGATAAATGGGTTGACTGGGAGGACCAGATTTTGGAGGATACCG TTCCTTTGGTTGGATTTGTCAGGACGATTCTTCATTCTGGACAGTAAGTTTTCTCCTTTATTTTTCATCAATTAGATAGA AAATGTGATATTTTTTTGTCATTTTCACCAGACACTTCAACTAGGCAATGTTGAATAGTAGTAAGGTTGTGTTTGAGTAA ACAATTTAATTTGATAAACTTATTTGAAATAAGCTCAAAATAGGTTATATGTAAGCATAAACTCTTGTTCATAAGCTAAT CTTATCAGTTTGTGAAAATAAGCTCAAAACAGCTTATAGGTAGGTCATAAGCTAGTTACATAAGCTCTTTCACACACTCG CATAAGCTCAAATAAACTCTTCCAAACTGGGTCTAATATAACAGGTTCTCATGCTTTATGTAATGATGCATATTGGGTGA TGGTACAATTTCAACAATTTTTGTTTACTAAATGGTAATGTGTTTGTGTGTATAATATAGTTAAGATTGAAGTCTGAAAA AAAAAGGGATTGATAGATGAATAGGTGGTGGTCGTCTAAGTGTGCATGTGAACATGGACCATTTAAGAGATTCGTAGAAA GTGAGAGGAGCAACCAAACTCCAGCCAATATTATTAAGTGTTATGATTTAGGAAATGAGAAGTGGCAGAGGAGCCAAGAC TTCATACTCATGTATATGGATGAAGAAGCTAGCTAACTGAAGCTTCTAATCTGTATTGGGTAGTCCACCAGTAATTGGCA ATAGGGCATTATGTTTATATGTGGTTGATGGGGTTGTGGTGTAAAAGAAATGGTGATTGTGGAATTGGGTCTTTGGAAAG AAGAAAGGTGGATACTTTGTAGAAGATAGGGGCAATCTATACTTTTTTAGTCACATTGTGCGTGGGACAACAAGTTGTTC TTTCGTTTAGTAAGTAATTCAATAGTTGAATCATGTATACCAAATTTAAGATAATTTAGACATTCATGTATATGCAATCT ATAAGTAGTAATTTACTTATATTTTAAATAGTATATTATTCTACTTAATAGATATTGTTGTATTCAACAGATATTTTAAT GCTTTTTGTTTCCTTTGAACTCAACTCCAATGAATCTATGCAGAGATGGGTGCACGCATGTGTCACTATGTAGTTGTTTC TCACGTTATTCTCTGCATGGCCTATTTGATTCTTTGACTAAAAACCTAACACATACTTATTACAGACCACAGACTAACTC TAACATTCTAATGTCTTAACCTTTAAATATTACACTACTTAAGTAATCAGTAAATTTCTTGACAGCGAAAATGCCAATAC TTGTACTCAAGTTTTGTATAACACGCTTTCTAAAATATGATTTCAGAACTTTATATTGAGAAGGAATGATACAAATATGA CCATACTTGAAGCTAAAAATACAAGGCATAGTATCTAAACAAGTTGGGAATATCATTTCGTTATGGATTCTTCAGATTTA CTCCAAAATGTAAATTTCTTGCTACCTCTTTGCATTTAAATCTGTATGTTTGAATTGATGAGACATTGCTGCATACATCT AGGGTTCAATAAATGACAATATTGCTTCAATGAAACAAAAGCAAAAGAGAGTACTTACTCTTGGGATGAAGGAAATGGCC TCTCTTGAGCTATCGCTGACATTGTCGTGTGTCAGATGAGACAGTTTCATTTGCCTAAACATGTTGGTCGTTTTTAAGTG CTCTTCCATTTTCATCATTACCCAGGTTGCGTGTGCAATACCTGGATAATATGAAACGGTCAACAAGGCAAAATGGATTT AGTTGGTTCAAACCCCATTGCCACGGGCACTGGAGAATTAAGGCAATCCTTTGTCCTTGGTCACATGGAGGTCTGATTTT CCAGCATTTCAGTAGAGATAGGGAAGAGGGGAATAAAATCAAGGCAATTTACAAATCATCAGCCTTTTTGTAAAAGTCAC ATGCGTACATGCAAAGAAATTTAACTAATAATTATGTTCATGAATGTACATGTTCTGTTTTCATTTATCTTGGACATTCT GATGATACCTTGTTGTGAATTCTTGCTCTAGTTATGAAAGTGGAGATAGACTAAGTCCGGAGCATGAGAAAACCATTCTT GAGAAGCTGCTTCCCTTTCATCCAGAATCTGAGAAGAAGATCGGATGTGGAATTGATTATATAACGGTATATGTTTCTTT CCCTCTTTCACTCACTCTCAGACACAGCACATGCACAGTGCACTACTTGATTGCCAGAAAGCTTTTGCCCATAGTACCTT TTCTTTTCTTTTTTCCTTTTTCTGTTGAGTCTGATATTAGCAATCTATTGGATACCGTGACATTAGTTTTTTCCTACTGT AAGATTTTTACGCCTCATCCATCATTAAATTAGAATAGCTATGGTGGATGGTCTGACTCGCTAACGGTAGGATCTGTCTC TTGTAAAACGCGGTGCAATTTACTAATTAAAGTCGAAGTTGGTAGTTGTGATAGAATCAAAGGAATTAGTTTTTATACCA TCTAATTTGCTAATCATAAATAATAGCAACACACACCTTTTATGTTGTGTAGGTTTACAATTTATTAAGCCTCTGTTACG GATATGTTTTTTCAGGATCTTCATCTAAAAGTTGTCTACTTGTCTTCATTTTTCCCTTTCTTGTAGTTCAATTCATTTGA TATTCCAAATCCAACTACTTCCCTTGATCTTTTTCTCATCCATGATAGGCATGAATTAACATAATAAATGCGTTCAGTGT TATTTTTCGGCTATTTCTTTTGCAGTTGTCCAAATATAGCTTTTGGCCATGGTGTTACCATTATGTGTAGTGATGTTACA CTTATACCTGTCTTGGCTGCTGAAAAGATGTAAAATGATTGGATTCCAGCTAGGTTGTCAATCCCGGCGGGATCCTGTGA GATCCCGATGTCCCATCCCATCTCAGCCAAGTACTAGGACGACCACCACCATCCCATCCCACTTCGCCATACTAGCATTT CCCGCGCGTACCCGGACAAGGAAGGGTCTGAAATTTTAAGAAATGTCCTCCAATTTTAAACGTTGGGGTGTTTTTTAGGG GCATATCCGGGTTTTCGCAACAAAAAAACCCTAGATGGGAGGAAGAGTTTGCTCTCTCAAGACCTATGACTTCCATTGCT AGTTTGCCACTATGAGAGTACGAATATGTAATGAATTTCAAGTAATATTTATCATCGATTTAGTATACATATATATGGTA TAAATTATACAAAATGTAGGCAAAAAATCACTATCCCAACCATCCCACTATCCCATTTTTGGGGCCGGCTGCTATGTGCC GGCTGCCGAGATCTGGGGTTGACATTATAGGATTCCAGTTTTCCCTTTTTAGGCTAAGGAGGAATAGTGCAAACTGTGCA ATTGTTTGCTTCTGCTAACTGTCTTCCATTACATTCCAACATTGGGTTTTCAGATAAGAAATGTATATAAATTAAATATG CATTTACTGCATTATTAACATGTTTGGATCACCTTCTCTTTCCTCTGAATTATTTCTGCCACCCACTCCCAGAAGCTGCT CACACTCATAAGCTTCTTCTCATAATTGATTTTACTTTTAAAATCGTTTTTAGAAAGATTTCCAAATATGCACTATGTCC AATCTGGTTTTTCTTGGGAGTGATTGTAACTCTTGGTTTGTGATATTTATATGTTGCTGAAAGATCTATTTTCCCTTTTC CTACGACAGATTGGATACCATCCTCAATTTGATCGATCTAGGTGTTTGTTCATAGTACGGAAGGATGGAGAGCTGGTTGA CTTTTCATATTGGAAATGCATTAAGGGTTTGATTAGAAAGAATTATCCATTATATGCAGACAGTTTCATTCTCAGACACT TCAGGAAGCGGAGTCGTAATCTGTGAAGTTAGCACTATCTTTTTATGGCTGTACCATTTTGTATTAGAGTTCACTTTTTT TCAAATCCCTTTTGAGTTTTCGTGTTTTCTTGTTGCTGGTAGCATATTATAATGATCTGAAAAAAATGAGATTAGATAAA TTTCTGGAGTTTAGAAGAGTGGTTAGCATTTAAGACCTCACTACAAAATGCTAGAAAACGACTTCATTTTACTATTGACG ATATGTCAATATTTGTAGTGATTTGAAAATATGGGACTGTAAACTATGTGTATAGAGAGACCTTGATGATAATGTTCCTC TCAGTTAAATTAATTTCCAATTTAAGGAGATTCTAGTTTATGTTCTTATTTTTTTTTTGAAAAGGAGAATTCTAGTTTAT GTTATCCTATGTTAATTCCAAAGCAGGTCTAAACTCCTGGGAGGACTTATAGTAGTGTTGACAAGTTGCTTGTATGGAGA ATTTCTTACAGAGAGAACCAAGAGCCCGGTTGGAGACAAACTTATTTGAGTTTATCTACTAGAAAAAACACTAGATAAAC TCCAACAAATGCTCTTTGGTTTGTATCCAAATGGGTTGCAACAAGTATGATGGTGGTAGGATTGAAGTTAGTTAATAATG GACAGGAGCTGTGGAGATAACTGCTTTAAAAAATTAGCAGAAGGTGGACTCTATTTTTGGGAGGTTATTTGTAAAACATG AAAATTAGTGGATAAGAATCTAGCTTGGAGAGTGTGGAGTGGGCCCAGCTTCAAATTTTGGATCTTTAATTGAGTCACTT CACTCCGGCCTCTCAAGTAGTGGGAATTTTCTATTCCTGAGCATGATATTCAAATGTTACTGCAAGATTTTGTGACAC
CDS sequence (LotjaGi1g1v0355300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCATCTTCTTCTCCACTGTCCCCAACACAGTCACATATCCACTCCCTCGGTAACCCTTCTTCCTCTTTCCG CTCCCCTCCGCTCATTCTATCTTTCCGTTTCTACTGGAGCGCCTCGTTGCCACTTCACACTCGTCTCTCCGCTCTCAAAG CTGCTGCTGCTGCTGCTTCTTCTGATGCTGCTGACAATTTGCTTCGGAAACCGCTAATTACTCCGCGGAAGGACCCAGCT GGAGTTTTGGAGGAACATGGGTATGCCTATGAAGAAGAAGATGATGAAGAAGAAGAAGAGGAAGATAAATGGGTTGACTG GGAGGACCAGATTTTGGAGGATACCGTTCCTTTGGTTGGATTTGTCAGGACGATTCTTCATTCTGGACATTATGAAAGTG GAGATAGACTAAGTCCGGAGCATGAGAAAACCATTCTTGAGAAGCTGCTTCCCTTTCATCCAGAATCTGAGAAGAAGATC GGATGTGGAATTGATTATATAACGATTGGATACCATCCTCAATTTGATCGATCTAGGTGTTTGTTCATAGTACGGAAGGA TGGAGAGCTGGTTGACTTTTCATATTGGAAATGCATTAAGGGTTTGATTAGAAAGAATTATCCATTATATGCAGACAGTT TCATTCTCAGACACTTCAGGAAGCGGAGTCGTAATCTGTGA
Protein sequence (LotjaGi1g1v0355300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSSSPLSPTQSHIHSLGNPSSSFRSPPLILSFRFYWSASLPLHTRLSALKAAAAAASSDAADNLLRKPLITPRKDPA GVLEEHGYAYEEEDDEEEEEEDKWVDWEDQILEDTVPLVGFVRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKI GCGIDYITIGYHPQFDRSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRSRNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 9 | 224 | 216 | 1.7E-90 | – | |
| PANTHER | 9 | 224 | 216 | 1.7E-90 | – | |
| Gene3D | 109 | 205 | 97 | 3.5E-22 | – | |
| Pfam | 123 | 199 | 77 | 7.0E-28 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0355300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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