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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0355500 |
| Transcript ID | LotjaGi1g1v0355500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | THO complex subunit 5 like; TAIR: AT5G42920.2 THO complex, subunit 5; Swiss-Prot: sp|F4K4J0|THO5B_ARATH THO complex subunit 5B; TrEMBL-Plants: tr|D5LMF8|D5LMF8_9FABA Cold-induce protein; Found in the gene: LotjaGi1g1v0355500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82707257..82711272) extracted from Lotus japonicus Gifu genome v1.2.
ATCATTACTTACTACTTACTAGTGTATTTTTTTTTTTCATTTTCCTATGTAAGAAAATAAAAATCAATGCAATAAAATTT ATAAAATTATTAAAAGATTGTAAGGAAAAAAAGTTATTAAAAGATGAGGAAGCGATTTGGGGAAAATGGAAGGGTTTTAG GGCTAGAAGAAATAGCTTGATTCTGCTACCTCTGAAAAAATCAGAGAAGAATCAATGGAAGACGGTGAGATAGAAGAGGG TTCAATCCCTATGGCGGAGGAAGATGAACCAGCCTTCGCCCACTCCCCAGAGCAGAGCAAGCCGGAGGAATCACCCTACG AAATGCTGCTTAACAGCAAAGCTTCCGTCGAGAACATCATCGCCGAGATCCTCTCCATCAAGAAAGAATCCAAACCCAAG TCACACCTTCGCGATCTCGTCACTCAGATGTTCCTCCACTTCATCATTCTCCGCCAGGTCCCTCTCCCATTTCTAGGGTT TATGCAATTTCATAATCAACAATTCCCTTACCCTAACTGTGTTGAATTCAAATTCACTGTTTACAGGCGAATCGCTCTAT TTTGTTGGAGGAGGATCGCGTGAAAATGGAAACGGAACGGGCGAAGGCGCCGGTGGATTTTACCACCCTGCAGCTGCACA ACCTGATGTATGAGAAAACTCACTACCTTAAAGCTATAAAGGCTTGCAAAGACTTCAAGTCGAAATATCCCGACATTGAT CTCGTGCCCGAGGAAGAATTCTTTCGTGACGCTCCCCAAGATATTAAGGACTCGGTTATGTCGAAGGACAGTGCCCATAA TTTGATGCTGAAGAGGCTCAATTTTGAGTTGTTCCAGGTGACAATGATGTGTTCTGTTCAATTTTGACATTTAACAATTA GCTGGATTTGACAAATGAATTAATGGAAGAGAATGAAGTTCGCATTGCATTCTAGTATATGTTAGACTAACCGAGTGTAG TGTGTTCAATTATGGTGTTTAATTTTCAAAGAGAGCTTGATGTTTGTTGTATTGGATTTTGGCAGAAGTTTATATCCCCT CAGAAAAAAAATTGTATTGATAAGCTAGTAGTTTCTGCTCCTATAGTAAATAGAGATTGTGGGATAAACACAGGGTAGGC TTGTGTTAATGCGTCTCTATGATTTTCTGAGCCATATATGTATACATTTGATCGTATATGGATCAAAGTTACTTGATACT TGTTGATAAAGTTGTGAAGACTAAGAGTAATGTGTGTGTTGTGCTTGCATGTTGAAAGAGTGTGATCATATGATGGTAGT CTTTTAATATGTATCTAGTAGCATTGTGTGAAAATTGAAAAATTCTGTCTCATTCATTTATCTTTTATTATTGCATTAGT AACCTGCCTTCCTTGAGTTTTCTTGTGAATAGCACTAAATATTTTTGCAATTCTATATCAGCGTAAAGAGCTCTGCAAAC TTCATGAGAAACTGGGACAACAAAAGAAAGCCCTTTTGGAGACTATTGGAAACCGAAAGAAGTTCCTTACAAGCCTCCCT TCGCATCTCAAGTCTCTTAAGAAAGCATCCTTGCCAGTACAAAACCAACTAGGACTTATGCATACAAAGAAACTAAAGCA GCATCAATCAGCAGAGTTGCTTCCACCGGCTCTTTATGTGATTTACTCACAGCTGTTGGCTCAAAAAGAGGCCTTTACAG AACCCATTGATGTGGAGATTCTAGGAAGCCTGAAAGATGCTCAAGCTTTTGCTCGCATTCAAGCTCACAAAGACACTGGT AATTATGAATTGATACATGAATTTTAGGGATAGGGTTAGGGTATCCACTGACACTGGGTGATCATTATAATTTTTTTTTA TGATTCAATTTTAAAGACCACTTCTAAGGAATAATTCAGGACATCGTTAGCTCTTGAAAATCATAGGTAGTTGTTATACT AACAACAAGATACAAGTAGAGGAAGTTTATTACCAGTGTTGAAGTACTGCCATGACTGCCACATCTATTAATGGTCTTAA GTTTATATTTCCTTGGCTTATCTAAATGGATAGTTAAATTTTTACAATCTTTCTAAGCATGTGTCTTACAGTTACATAGC TTTAGAATTGCTTGAGCATTTGAATATTTTAATCCTGAGTCTTCGAATTGATTTCTGTAATTTTCTCCAACCTGAAACAG AAAATATAGGTATTGACTGTGATGTTCTTTTATTACTAGGCATTTCCTCGGGTAATGATAATTCCAAATTGGAAGATGAT GTTCCTGACGAAGAAGAAGATGGTCAAAGACGAAGAAAAAGGCCAAGGAGGGTACAAGTCAAGGAGAGCCCTGATCAGGG GGGAATCTTTCAAGTTCACCCACTTAAAATCATTATCCATGTGCATGAAGATGAGACTTTTGATGCTAAACATGCAAAAC TCATCACTCTAAGGTTTGAGTACCTGGTGAAGTTGAATGTTGTATGTGTTGGAACAGAAGGATCTGATGATGGTACTGAC AATGACATTTTATGCAATTTATTCCCCAATGATACAGGACTCGAGCTTCCTCACCAGGTTTGGTGTCTTTACTCGTTATT GGCATGTTCTTCATTTACCCATTCTCATCTTTGATGTATTCTCCAACTCATTTTTGACATGCCGTTCCTATCTCTTTGAA TGGTGATGCAGTCAGCCAAACTCTTTGTTGGAGATGCTGTAACATTCAATGCTCAAAGAGCTTCACGTCCCTATAAATGG GCTCAGCACCTGGCAGGAATTGATTTCTTGCCTGAGGTTTCTCCGCTGCTTCTTAATGACAACAGTGAGGCAACCAAGAG TGAAGATGTTATATCTGGTCTTTCACTATATCGTCAACAGAACCGAGTACAGACAATTCTACAAAGAATTCGCTCAAGGA AAAAAGCTCAGTTGGCTCTTCTGTGAGTCAATGCTCTAGCTTTTTTATGATTTCAGAATATCTAGGATCTTTTTTTATAT TCAATGACGATAAATCTGTAATTTGATCAAGTTAACATTTTCTATTGGACTTTGCATTTGGTTGTGTTGCTGTTACTGAC ATCTTAATAATGTTCCTTTCTTTGCCTGACTTTTGAATCTTCATAGTGTACAAGATCTGTATAGGATTGTCTTTTAGTCC ATTTAGTGAAATTCCATTCTGCTTTTGAAGATCCCTAGTTATCTTGCTTATTGATGTGGTTGGGCATGCTTAAGTTAAAT TCTGTGGAATTCTTTCACTGGATTACAGGGAACAGCTAGAATCTCTTAAAAAGCTTAAGTGGCCTCTTTTGTCCTGCAAA AGTGTTCCATGGGCTTTGCATACTCCTTTGTGCAACTTGGATGGTTGGTCACCTGTAAGAGCCCTCCCTGTACCTAATGA GGCTTCGTCTATGGCCATCATAGAAATAGAGAAGCATACTCAGGAACCCATGGATGTTGATGTAATTGAACGTTCTGGTG CCACAAAAGAAGAACTGGAGAGTTTAAGGGAAGATGGGGAGCTTCCAACTTTACTTCCTAACACTTCTAAGTTTGACCGT TCCAAGCAAGTGAGCTTAATTTCAAAAAGTCCTCCACTCAATAAAGCTAGGTCACAGAGTTTCAAAAAAGTTGATGATAA TTCGGATTTCCTGCTGGATACTGAAAGTGATTTTGATGAGCCAGCACATATTGAACAAGAACATGAAAATATATCATCTG ATTACTGTGCTAGAAAGTCTGTATCATGGATTGATTCTGGAGTCAAAGAATTTGTCCTTGTTCTTAGCAGAAAAACCAAT GCAGTTGAGAGGAATGTGAACTTAGAAGCCAAGGTAAAGAAGCCTCCCTGTTTAACTGCTGATTTGAATTCAAGGATCTA TGGGCACTTCCAACTAGTTTTTAATTTTTATTTTGACAGATAAAGGTCAGTATGGAATATCCTCTAAGGCCTCCTCTTTT TGCATTGAGTCTTTGCTGTATACCTTCTGGGGAAAAACATGACGAGAATGATGGACTGGAGTGGTATAATGAACTTCGTG CAATGGAAGCAGAGGT
CDS sequence (LotjaGi1g1v0355500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACGGTGAGATAGAAGAGGGTTCAATCCCTATGGCGGAGGAAGATGAACCAGCCTTCGCCCACTCCCCAGAGCA GAGCAAGCCGGAGGAATCACCCTACGAAATGCTGCTTAACAGCAAAGCTTCCGTCGAGAACATCATCGCCGAGATCCTCT CCATCAAGAAAGAATCCAAACCCAAGTCACACCTTCGCGATCTCGTCACTCAGATGTTCCTCCACTTCATCATTCTCCGC CAGGCGAATCGCTCTATTTTGTTGGAGGAGGATCGCGTGAAAATGGAAACGGAACGGGCGAAGGCGCCGGTGGATTTTAC CACCCTGCAGCTGCACAACCTGATGTATGAGAAAACTCACTACCTTAAAGCTATAAAGGCTTGCAAAGACTTCAAGTCGA AATATCCCGACATTGATCTCGTGCCCGAGGAAGAATTCTTTCGTGACGCTCCCCAAGATATTAAGGACTCGGTTATGTCG AAGGACAGTGCCCATAATTTGATGCTGAAGAGGCTCAATTTTGAGTTGTTCCAGCGTAAAGAGCTCTGCAAACTTCATGA GAAACTGGGACAACAAAAGAAAGCCCTTTTGGAGACTATTGGAAACCGAAAGAAGTTCCTTACAAGCCTCCCTTCGCATC TCAAGTCTCTTAAGAAAGCATCCTTGCCAGTACAAAACCAACTAGGACTTATGCATACAAAGAAACTAAAGCAGCATCAA TCAGCAGAGTTGCTTCCACCGGCTCTTTATGTGATTTACTCACAGCTGTTGGCTCAAAAAGAGGCCTTTACAGAACCCAT TGATGTGGAGATTCTAGGAAGCCTGAAAGATGCTCAAGCTTTTGCTCGCATTCAAGCTCACAAAGACACTGGCATTTCCT CGGGTAATGATAATTCCAAATTGGAAGATGATGTTCCTGACGAAGAAGAAGATGGTCAAAGACGAAGAAAAAGGCCAAGG AGGGTACAAGTCAAGGAGAGCCCTGATCAGGGGGGAATCTTTCAAGTTCACCCACTTAAAATCATTATCCATGTGCATGA AGATGAGACTTTTGATGCTAAACATGCAAAACTCATCACTCTAAGGTTTGAGTACCTGGTGAAGTTGAATGTTGTATGTG TTGGAACAGAAGGATCTGATGATGGTACTGACAATGACATTTTATGCAATTTATTCCCCAATGATACAGGACTCGAGCTT CCTCACCAGTCAGCCAAACTCTTTGTTGGAGATGCTGTAACATTCAATGCTCAAAGAGCTTCACGTCCCTATAAATGGGC TCAGCACCTGGCAGGAATTGATTTCTTGCCTGAGGTTTCTCCGCTGCTTCTTAATGACAACAGTGAGGCAACCAAGAGTG AAGATGTTATATCTGGTCTTTCACTATATCGTCAACAGAACCGAGTACAGACAATTCTACAAAGAATTCGCTCAAGGAAA AAAGCTCAGTTGGCTCTTCTGTGA
Protein sequence (LotjaGi1g1v0355500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDGEIEEGSIPMAEEDEPAFAHSPEQSKPEESPYEMLLNSKASVENIIAEILSIKKESKPKSHLRDLVTQMFLHFIILR QANRSILLEEDRVKMETERAKAPVDFTTLQLHNLMYEKTHYLKAIKACKDFKSKYPDIDLVPEEEFFRDAPQDIKDSVMS KDSAHNLMLKRLNFELFQRKELCKLHEKLGQQKKALLETIGNRKKFLTSLPSHLKSLKKASLPVQNQLGLMHTKKLKQHQ SAELLPPALYVIYSQLLAQKEAFTEPIDVEILGSLKDAQAFARIQAHKDTGISSGNDNSKLEDDVPDEEEDGQRRRKRPR RVQVKESPDQGGIFQVHPLKIIIHVHEDETFDAKHAKLITLRFEYLVKLNVVCVGTEGSDDGTDNDILCNLFPNDTGLEL PHQSAKLFVGDAVTFNAQRASRPYKWAQHLAGIDFLPEVSPLLLNDNSEATKSEDVISGLSLYRQQNRVQTILQRIRSRK KAQLALL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| PANTHER | 1 | 486 | 486 | 7.5E-197 | ||
| Pfam | 79 | 435 | 357 | 6.3E-109 | ||
| MobiDBLite | 289 | 329 | 41 | - | – | |
| MobiDBLite | 309 | 325 | 17 | - | – | |
| Coils | 473 | 487 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0355500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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