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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0355800 |
| Transcript ID | LotjaGi1g1v0355800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9SND4|HEC2_ARATH Transcription factor HEC2; TrEMBL-Plants: tr|A0A1J7H7H2|A0A1J7H7H2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0355800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82730669..82731830) extracted from Lotus japonicus Gifu genome v1.2.
CCGCCTGTAAGGTGTTGATACATTGCGGTAGCCTGTTCCCAATATCACTATTTTATTGATTTTTTCACTATTCTTCCTTC CTTCTCACCAATCGAATAGGCATTCTTCACACACTGCACATTCTGCAGACAGAACTCCTATTCCCACTCCTATTCTTCTT CCCCATCCCTCTGTTCATCTGCTAGTTTCTCAGTCTTTTCAGTCACCCTTTAAATACTTCTCCATCCTTTAATTTCTCCC CCCTAATGGACTCTTTTGACCAGTTAAAATCTTCCCCATCATCAGAGGATTTCATGATGATGATGCAATTCCCTGAATTC TCAGCAGCTTACGGCGCCGACGCAATTCCACCGCCAGAGGAGCCAGCTGGCGCTGTTAGTACCATGCCACTATCATTTAC ACACTTACCGTCCTCCACAATCTCTTTCACTAACAATAACCCAACCCCAACATTGCTTCAACACCGTAGCAGCAACACCG CCACAACTTGCTTGTCAAACAGTACTAGTTGTGGCGGTGCTGATACTACGGTGTCCTTTGAGAAGCGGAACACGATGGTG GCGATGAGGGAGATGATATTCAGGGTGGCGGCGATGCAGCCAATACACATGGTAGACCCTGAGTCAGTGAAGCCGCCGAA GCGGAGGAACGTGAGGATTTCAAAGGACCCTCAAAGCGTGGCGGCGAGGCACCGGAGAGAGAGGATAAGCGAGAAGATAA GGATACTGCAGAGGTTGGTCCCCGGAGGAACCAAGATGGACACTGCTTCCATGTTGGATGAGGCAATTCACTATGTCAAG TTTCTCAAGACACAGATTCAGTCACTTGAACGTGCTGCTTCAAGTAACAATGCAGGGATAGGGTTCCCTGTTGCAATGTC TAGTAGGAGTGTTATCCCTAATTATCTTAATCCTCTTGCTAGGCCTTACCAGGCTCGAAATGTTGAGCATGAGAGATATG ATTAAGGTTTAATGAGCTTGTTTATATAGCTGATTAATTCAATACAAAAGGTGTAGCCATTTCTTAATTACAGATATTAT GCTGTCAATCGTGCATATTGGCTATCTCTTTAACAAAGTTATTTATCTGAAGTATATGAAGGATTTTCAATTTTGGAATC CCAATTGTACTAATTTGTTGTATCAGAGATATTATAAAAAAT
CDS sequence (LotjaGi1g1v0355800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCTTTTGACCAGTTAAAATCTTCCCCATCATCAGAGGATTTCATGATGATGATGCAATTCCCTGAATTCTCAGC AGCTTACGGCGCCGACGCAATTCCACCGCCAGAGGAGCCAGCTGGCGCTGTTAGTACCATGCCACTATCATTTACACACT TACCGTCCTCCACAATCTCTTTCACTAACAATAACCCAACCCCAACATTGCTTCAACACCGTAGCAGCAACACCGCCACA ACTTGCTTGTCAAACAGTACTAGTTGTGGCGGTGCTGATACTACGGTGTCCTTTGAGAAGCGGAACACGATGGTGGCGAT GAGGGAGATGATATTCAGGGTGGCGGCGATGCAGCCAATACACATGGTAGACCCTGAGTCAGTGAAGCCGCCGAAGCGGA GGAACGTGAGGATTTCAAAGGACCCTCAAAGCGTGGCGGCGAGGCACCGGAGAGAGAGGATAAGCGAGAAGATAAGGATA CTGCAGAGGTTGGTCCCCGGAGGAACCAAGATGGACACTGCTTCCATGTTGGATGAGGCAATTCACTATGTCAAGTTTCT CAAGACACAGATTCAGTCACTTGAACGTGCTGCTTCAAGTAACAATGCAGGGATAGGGTTCCCTGTTGCAATGTCTAGTA GGAGTGTTATCCCTAATTATCTTAATCCTCTTGCTAGGCCTTACCAGGCTCGAAATGTTGAGCATGAGAGATATGATTAA
Protein sequence (LotjaGi1g1v0355800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSFDQLKSSPSSEDFMMMMQFPEFSAAYGADAIPPPEEPAGAVSTMPLSFTHLPSSTISFTNNNPTPTLLQHRSSNTAT TCLSNSTSCGGADTTVSFEKRNTMVAMREMIFRVAAMQPIHMVDPESVKPPKRRNVRISKDPQSVAARHRRERISEKIRI LQRLVPGGTKMDTASMLDEAIHYVKFLKTQIQSLERAASSNNAGIGFPVAMSSRSVIPNYLNPLARPYQARNVEHERYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 48 | 230 | 183 | 7.4E-78 | – | |
| PANTHER | 48 | 230 | 183 | 7.4E-78 | – | |
| Gene3D | 134 | 199 | 66 | 1.5E-11 | ||
| ProSiteProfiles | 138 | 187 | 50 | 15.294 | ||
| CDD | 140 | 192 | 53 | 1.94874E-11 | ||
| SUPERFAMILY | 142 | 201 | 60 | 3.01E-14 | ||
| SMART | 144 | 193 | 50 | 4.7E-13 | ||
| Pfam | 148 | 187 | 40 | 6.5E-7 | ||
| Coils | 177 | 197 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0355800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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