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LotjaGi1g1v0356600.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0356600
Transcript ID	LotjaGi1g1v0356600.1
Lotus japonicus genome version	Gifu v1.2
Description	HXXXD-type acyl-transferase family protein; TAIR: AT5G07850.1 HXXXD-type acyl-transferase family protein; Swiss-Prot: sp\|Q9SND9\|Y3028_ARATH Uncharacterized acetyltransferase At3g50280; TrEMBL-Plants: tr\|A0A151RIE0\|A0A151RIE0_CAJCA Putative acetyltransferase family; Found in the gene: LotjaGi1g1v0356600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:82960781..82962203) extracted from Lotus japonicus Gifu genome v1.2.

AACACATTTACTTTGCTTTTATATCTGCTAATTCAGATATCTAAAGTCTTTGCAACACAAATCTGAATTCTGCATCTGTC TACCGGGGAAGATGAGTAACCCTGCAGTACAACTTGTTTCTGAATGCTTCGTCGAGCCTGTCGAAGAGTCCAACCAAATA TGCTATCTAACACCTTGGGATATAGCTATGTTGTCCCTACACTACATCCAGAAGGGCCTTCTCTTCAAAAAGCCCGAATC TGTTGTGAATCAACAAGATTTCATGAACACTCTGTTGGAAAAGCTCAAACACTCTCTTTCTCTTTCCCTTGTCCATTTCT ATGCACTCGCCGGTCGCCTTGTTACCCGGAAAACCCAAGACCCTCCATATTATGCTGTTTTTGTTGATTGCAGAAACAGT TCAGGAGCTGCATTTATCCATGCAACTTTAGACATGACCATATTTGATATCCTCTCCCCTGTTGATGTCCCACCCATTGT TCAGTCCTTCTTTGACCACCACAAAGCACTCAACCACGACGGTCACACTATGCCATTGTTGTCAATCAAGGTCACGCTGA ACTCTTAGATGGCGTTTTCATTGGTGGTTCTATGAACCACTGTGTTGGTGATGGGACTTCATATTGTAATTTCTTCAATA CATGGTCTAAGATCTTTCAAGCACAAGCTCAACAGCTCATCATGGGCATGATGTTCATCTTGATGTTCCAATTTCACACC AACCCATTCACAATCGATGGTTTCCACAAGGCTGCAATCCATTAATAAACCTTCCCTTCAAACATCATGATGAATTTATT TGCAGGTGTGAAGCACCAAATTTGAGGGAAAGAATCTTCCATTTTTCAGCAGAGTCGATTCCGAAACTGAAAGCAAAGGC AAACAGAGAATGGTCTTTCAATTCAACAAAAATCTCTTCATTCCAATCATTATCAGCATTTGTTTGGAGATCCATGACAC GTGCGCGCAACCTGGCTCATGATCAGAGAACAGTTTGCAAACTAGCTGCAAACAACCTGGGATGGGCTGCATGGAAGCTT CATGTGGCTGTTGCGAACCATGACAATGGGGTAGTGAAGAAGTGGGTCAAAGAGTGGTTGCAATCTCCTATGGTGTATCG CATTGATCTGTACCTGGAACCAAATATTGTGTTGATGGGTAGTTCACCGAGGTTCAACATGTATGGGAATGAGTTTGGAA TGGGGAAAGCAGTTGCGGTTAGAAGTGGTTATGCGAACAAGAGTGATGGCAAAGTGACTTCATATCCAGGTAGAGAAGGA GGGGGAAGTGTAGATTTGGAAGTGTGTCTTTTGCCAGATACAATGACCAACCTGGAATCAGATGAAGAGTTCATGAGCAT AGCTTCAGTGTGCAAAATTCCCCTGTACTAGCTATCACAATCCTTTTGTTACCTCTTCTTTTC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0356600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTAACCCTGCAGTACAACTTGTTTCTGAATGCTTCGTCGAGCCTGTCGAAGAGTCCAACCAAATATGCTATCTAAC ACCTTGGGATATAGCTATGTTGTCCCTACACTACATCCAGAAGGGCCTTCTCTTCAAAAAGCCCGAATCTGTTGTGAATC AACAAGATTTCATGAACACTCTGTTGGAAAAGCTCAAACACTCTCTTTCTCTTTCCCTTGTCCATTTCTATGCACTCGCC GGTCGCCTTGTTACCCGGAAAACCCAAGACCCTCCATATTATGCTGTTTTTGTTGATTGCAGAAACAGTTCAGGAGCTGC ATTTATCCATGCAACTTTAGACATGACCATATTTGATATCCTCTCCCCTGTTGATGTCCCACCCATTGTTCAGTCCTTCT TTGACCACCACAAAGCACTCAACCACGACGGTCACACTATGCCATTGTTGTCAATCAAGGTCACGCTGAACTCTTAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0356600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNPAVQLVSECFVEPVEESNQICYLTPWDIAMLSLHYIQKGLLFKKPESVVNQQDFMNTLLEKLKHSLSLSLVHFYALA GRLVTRKTQDPPYYAVFVDCRNSSGAAFIHATLDMTIFDILSPVDVPPIVQSFFDHHKALNHDGHTMPLLSIKVTLNS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.30.559.10 View details on G3DSA:3.30.559.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.559.10	2	158	157	2.0E-30	IPR023213 Show description in modal box View details on IPR023213 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31896:SF46 View details on PTHR31896:SF46 Search for proteins/transripts with this domain View external data on PTHR31896:SF46	4	155	152	8.3E-74	–
PANTHER	PTHR31896 View details on PTHR31896 Search for proteins/transripts with this domain View external data on PTHR31896	4	155	152	8.3E-74	–
Pfam	PF02458 View details on PF02458 Search for proteins/transripts with this domain View external data on PF02458	14	155	142	1.2E-20	IPR003480 Show description in modal box View details on IPR003480 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016747 View details of GO:0016747 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring acyl groups other than amino-acyl groups	Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016746

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0356600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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