Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0357000.1

Overview

Field Value
Gene ID LotjaGi1g1v0357000
Transcript ID LotjaGi1g1v0357000.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT1G46768.1 related to AP2 1; Swiss-Prot: sp|Q8LC30|RAP21_ARATH Ethylene-responsive transcription factor RAP2-1; TrEMBL-Plants: tr|D7F0C1|D7F0C1_9FABA Dehydration responsive element binding protein; Found in the gene: LotjaGi1g1v0357000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:83033573..83036690) extracted from Lotus japonicus Gifu genome v1.2.

TTTTTATCAATTAATGAAGTGTTTCATTAAAAATGCTAAAGGCCCACAAACTCATACAAACGTGGATAAAAAAAAAAAGC TGAAGCTACAAGGCCAAGAATAAGAAAATGAATTAATGAAATAGTGCCTGCCAGCTCTTTGTAGAACTGTAGGTAAAACA TTGAGAAAAGTAAAGAAAATAACAATAATGAATGCACCCACTAGATACTCGAAACAAAAGCTTTCTTCAACAAGCAAAAG AAATTGATCTGGGAGCAGTTTGTCTTCAAAACTGAAAAAACGAAAAAGCATATCAGCCAAGGTAAGTTTTTTTTTAGTTG CAGAAGCTGTAGCAGCTAGTTCATGAGTCCTTCTATTGCCTTCCCTTCCCTGGAAAACACTTCTCTCCTTCCCTGAATTC CAACCCTTCCCATAAACCCTAGTCCATCATCCCAGAAACTCCAGCTTCCATGGCGTCAAAGAAGAAGTAATCGGAAGCCA TCCATGTACAGGGGTGACTTTCTCTGCTTCAATTTTTTTTTGCTGAGAAATTCCAAAAAACCAGGGGTGACTAAGCAGGG GAAGTCACCCCTGTGCCTCCGCCACTGAGTGTAGTGGTTATTGGTTAATTCACTTCTTACTTTAATTATGAGGTTGGGAG TTTGATCTCATTCGTTGAAATAAAGCATATATTATGGTCAGCTTAGTGCAAACATCAGCGGTGAAGAGATTAATCATTAC TATTAGCGATGGATACTCTGGACTAAAAAAAATAAAGACTAACACTAAGTTTGTTATGCATGAGTTACATGAGAGAGAGA TTTGGGTGTCCAAGTTGCTTGTATCAGTTGTATCATGTATGTGTACGTATGAGCGCTGTTTTTAAATTAAATCATTAAAT AAAAGCAAACGTGTTTTCTCTTCAAATGCCTAAACCCGTCGACCCTGGCGGTCACGGCACCACAAAACGCCACGTTGAAT TTAATATTCAAGAACAAAATTGCCTTACAAAATTCTGATTATTAAGAGAGAGATTTATAGTTGTGATGGATTATGTCGGC CATCTTTGGATTTATCTTCAAGAAACCAATGCCCAACGTGGCGGCTACCCTAGTCGACAGATAGACTTGCACCCAAGTGG GAAGGGAAGTTCATTCCTTTCACTTCACCCTTCCCACCCTTATTATACGATCATTATTATAGTACAATTCATTAATAGTA GTATATCTATATATATGTATTAATTAGAATACGCTACCGACTCATTTTGACACTCACTTTTCAACATAATTTTTGTTAAA ATTTATGTAGATTTTATTTTTAGTTTAGTGGAATCCACATCAATATTAACTAGATTGAATTGAGAGTGTTAAAATCAGTG TTGTTGCTCATTATTTTTTAATTTTTTTCATAATTGTCTTGATACAAATACAAAACAACACAAAACCAACATGAAGGAAG TGTGTGTGAACAGAATCTCCATGACCTGTAGCTTTTGCTTACACTTAGCAATTCATATATAAAGAAAGTTGGTCACATGT TATTAATACTAGCTAGCTAGGTACTTCAGCTAGCTGCACGTTTTAGTCGCACGATTCGTGATGATGATTAAACTCATGGA AGAAGAAAGAGATTGTTGTTCCACGAATTCCACGATCACAACCACCAGCAACAGCAGCAGAGAGAATAAACGGAAGCACC AACAAGACAAGCCGTACAGAGGAATAAGGCAGAGGAAGTGGGGCAAGTGGGTTGCAGAGGTTAGAGAACCTAACAAGAGG TCCAGGATCTGGTTAGGCTCTTATGCTTCACCGGTCGCCGCTGCACGCGCCTACGACACCGCCGTCTTCTACTTGAGAGG CCCCTCCGCCCGCCTCAACTTCCCGGAGTTGCTGTTCGAGGACGGCGGTGTCATATCGGCGGAGCAAGGCAGCGACATGT CCGCGGATTCAATACGGGAGAAAGCCACCAGAGTCGGCGCTAGAGTGGATGCTCTGCAAACCGCTCTGAAGGCATCCTCG TCATGCTCCGGTTCAAGTCAGACCACCACGGAAAAACCAGATTTGAACGAGTATCCAAAATCTGATGATGATGATGATGA AGACTCCTAGCTTTTACCTTGAAGATTAATTAGTCACGAACCTATTAGCGTATGTTGTTGTTATGTGTGGGATTTGAAAG TGCCTCTTAATTCGCCTATCTTCTTCTTGTTTATTCCTCTAGCAAGATATTTCCACGGTCGACAAATCATAGGACTAATT TCCTCAAAACTTAATGGGAGATCATATTAATTAAGTATATATTCAGAAGCAGAGAATATGAATTTGATTCTAAAGAAGTC CAATTATATACCGTTATGCTATATCTATTTTCTTCTTTTTGAGTTTAGTACGTTTATCATAGATTTAGAGTACATATTTT CTTTCAGTTCATTAGAAACTAGCATTTAGCAAGAAAGGAAGAGTACTAAAATCATATTTGTTGTTGATTTTCAGGGTTTT AATTTTCATTTTTTATATTTAAGGATATTAATTAACAATATTTATATTGATTCAGTTTAATTAGTAACAAATTGGCATTG AAGAAAAGTCTTTGATTAATTGTGCTTGTGAATTCTATCATGTGTTATCTGGATGATTGATCAAGATATGTAACAAAAGG CAATACGTCGGTGGGAAAAGAGGCCAAGGGGGAATATAGATAAAGATAGGAACAGCAGTGGCCAAACATAGCCGCATTGA TTCGAAACAAACAAACAAACACAAATGTTTCAGTCGACAAACACTAGTACGTACTAACAAACAAGTGGATATAATAGAGA TAAGAAAGAGACCATGAGCACCAAAATTAGCAGTTGCTCATGACACCACACAATCTCTTCTATCCAAAAACATTGAGCAA GATAGGCGGCGGATAATAGTGTAGCTCAATCCCAAAGAGAGGTTTTCACATGCCACAGTCATGGGGGAGTAATTGGGGGA TGGTAGCTTAGAGATAGCTTTGTTTTATATGCATTAATAGCATGCGTTTGGATATTAATTAGATATTAATTTTTTTTTTG AAAAGAATTAGATATTAATTGAATTGAACGTGAATCGATTTTCTAATTAAAAGAGTTCAATTCATTTTTTATTTCAAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0357000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGATTAAACTCATGGAAGAAGAAAGAGATTGTTGTTCCACGAATTCCACGATCACAACCACCAGCAACAGCAGCAG AGAGAATAAACGGAAGCACCAACAAGACAAGCCGTACAGAGGAATAAGGCAGAGGAAGTGGGGCAAGTGGGTTGCAGAGG TTAGAGAACCTAACAAGAGGTCCAGGATCTGGTTAGGCTCTTATGCTTCACCGGTCGCCGCTGCACGCGCCTACGACACC GCCGTCTTCTACTTGAGAGGCCCCTCCGCCCGCCTCAACTTCCCGGAGTTGCTGTTCGAGGACGGCGGTGTCATATCGGC GGAGCAAGGCAGCGACATGTCCGCGGATTCAATACGGGAGAAAGCCACCAGAGTCGGCGCTAGAGTGGATGCTCTGCAAA CCGCTCTGAAGGCATCCTCGTCATGCTCCGGTTCAAGTCAGACCACCACGGAAAAACCAGATTTGAACGAGTATCCAAAA TCTGATGATGATGATGATGAAGACTCCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0357000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMIKLMEEERDCCSTNSTITTTSNSSRENKRKHQQDKPYRGIRQRKWGKWVAEVREPNKRSRIWLGSYASPVAAARAYDT AVFYLRGPSARLNFPELLFEDGGVISAEQGSDMSADSIREKATRVGARVDALQTALKASSSCSGSSQTTTEKPDLNEYPK SDDDDDEDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 39 39 - –
PANTHER
PTHR31729
10 167 158 3.6E-67 –
Gene3D
G3DSA:3.30.730.10
37 97 61 3.5E-28
IPR036955
SUPERFAMILY
SSF54171
38 96 59 3.92E-20
IPR016177
ProSiteProfiles
PS51032
38 95 58 22.01
IPR001471
SMART
SM00380
38 101 64 1.7E-35
IPR001471
CDD
cd00018
39 97 59 8.57133E-27
IPR001471
Pfam
PF00847
39 87 49 6.9E-11
IPR001471
PRINTS
PR00367
39 50 12 3.5E-12
IPR001471
CDD
cd05943
68 138 71 0.00760235 –
PRINTS
PR00367
77 97 21 3.5E-12
IPR001471
MobiDBLite
mobidb-lite
136 169 34 - –
MobiDBLite
mobidb-lite
136 154 19 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0357000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…