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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0357800 |
| Transcript ID | LotjaGi1g1v0357800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit; TAIR: AT3G46630.1 DCL protein (DUF3223); Swiss-Prot: sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic; TrEMBL-Plants: tr|A0A0S3RB30|A0A0S3RB30_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0357800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83153487..83156743) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAAATAAAATAATTTTTTATAAAAATGTAAAATCACATTTTTTTAATCAGTACCAAAATAGACCCAATATTGCACTA ATCCAAGCCAGGTCAGAACCAACGATGGCGGCTCCTCTTCTTCGCAGACAGGTTCTTCTGCTTCGCGGTTGCTTCCAAAA CCACACTGCCGGAGCCGTTGCGGCGCGCCACCGGAAGTGGTTCAGCGCCGCCACAAACTCACCGTCGAATGAGGCTGAGG CGGAGGAGAAAGTAAGCCCCAGCACCACCTTCAATCTCCGGGAGAATGACCCCGACAGTCGGAAATGGAGGGATATTGAA GAGGAGATTCTCAGAGACATTGAACCCATCGTTTTGCTTGCCAAGGACATTCTTCACTCACCAAGGTCCCTCCTCTCTAC AGAACAAATTTGTCATCCCATTCGCCTTTTGCTTAATCATTCTGTTTTGTTCTCCAGGTATATGAATGGACAGATACTGG ATATGGAGGAGGAGAAAGCTATAGTAGAGAAGCTTCTTGCTTATCATCCAGAATCTGAAGATAAGATTGGGTGTGGTATT GAATCCATTATGGTAAGTGCTTGATCTGTTATCACATTGGTTGTTCTGCTAGGGCTTATTTCTACTAAATTGCAATTGCA ACTTCTACTTGTGTTTGTGTTTGTCCTAACTCCTAACTTACTAACCTACAAATATACTGCTTGTAATGGAATATTATGGG GATTATGGCCATGTTTAGATACCTGTAACTCTGTAAGCACTTGTGCAAACAGACATTTAGCACTCATTTCGAGTGAATGG AACTCTTATTAAGTACTGTGAATTGCATTCAACTTGTATCTAAACACTAAGTGATTACCAATTAGCATTACTATCATGTG TGTGAGTTATAATATTCTAATGATTCCCTTTAATCGACATTTGTTATGGATTAGTGTTGTTAATGTATAGGAGTTAGTTT GTGGTTTGGACCCTTAAAGGTCCACTTCTAACATGTATATATATCAGGGTTGTCAATAGTGGGCGATTGCGGCGAAACAG AGGTTAGGCGCGACGCCGGAGGCTGTAGCGGCACATAAATCATGTCGCGGTGGTAGCAAGGCGATTGCAGCAGAAATCAC GACTGGTTGAGCGCGATAGTGGTGCGAGGAAGAAAGAGGGATAAAAAACCCCACTCTTCTTCAGAGCGAGAACCTGAAAT TGCCCCCAGATTTAAACATTAGGTTAAACTTTTTAAGGGCATTTTGGGATTTTCCTACCTTTAATGAAATGTTGCAATTA TTCACCCCTTCTTCGACTGTGTAATGAAAAACCCTACTCTACAAGTGAAAACCCCAAATTGCCGCCATTAACAACACTGA TATATATATATAGGCTACAATCATTAATCTATAAGTCTACATGATAAGTTCTAACCTATATATACATGTTAGAAGTGAGC CTATAAGCGCCCAAATGATAGAAGCCTCATCTCATGGGCTTCTGTTAGTTGGGCCAGAAATAGCTAGTTTCATTATATTG CTCTTTTATGAATATTAGTTTAATAGTTTCAGCTTTTTATTATATATTATTATATTATGATCTAGAATATTCTATTTGCT AGGATGATGCCACATGTAAGGTCATCTTTCATTCCTTAAGTTGATAGATAGTATAAGTTGTATTGCTTCAATTGTGAAAT GTTAACAAAATTGACAAAGTCTTTAATTTCTATCCTTTTCTTATCTTTTCTTAGTTTAGATTTTAGGGTTCTTAATGTTC TTGCTTGATAGGAACTAGCTTCCTATCACCAAACCACAAACTAACTACTGTACATTAACAAGTGTTATATTACTAATAAT TATTATCATCATTTGGGGTCTCAAATTAGTTTAAGTAAGGATGATCTGCTTATGATACTGAGTCAAGGGACAATAAACTT TAGTAAAACTAAGCCAAAATTTTAAAACTTATGCTACTCGCTATGCAGTGTTCTATCAGTCTTGTGGTTTTGAAGTTAAT ATTTGCATTGTTTTCACCAATGTTTAATACCTTCTGAAGCTGATCTAATGCCTTTACTTATGGTGCTGCTCATAGATAAG TCAGATATAGAAATGTTTGTGTGCCGGGTCCTAATGAATTTTTGGATATTCTTGCTAATCTTTTACTTAAAAGATATGCT TTTAATCTCTTATTCCTTATTTTGTCTTGCTGATCACAATATTGATCCAATCATGTTTATGCTAATTGATCAATGACATG AGAGCTATATAGCTCTTACTTGGATTATACTCAAAAGTTTGTGTCTCCCAAATCCCTCTGCTCCAAATAAACACTTCATA TTTGGAGTCCAATGTATCCTTTACTGTTTGATTTGAATATTGTTGGTTTGATCTTCAGTTTTTCATTATGGTGATCTTCA GTCCAATGTATCCCCCCTCTTTACGGGGTTTTTCATTATGGTGTTTGCCCTGCGCTTTTCTTTTTCAATTATAAACCTGG TTTTGGTAGACATTTCCTATTTTTTTGAAATTTACAATGACTGTCCTAAGACAGTTGAACTTAAGCTATTATTGTTTGGA TTTGCTTGTCAATGATCTGCCATGGTTATTTTCCAAAGTAGGTAGCAAGTGCCGGATATGGATATGACTTATTTTCTTGT AGGTTGACCGTCACCCTGAATTTCGGCACTCAAAGCGTCTTTTTGTTGTAAGAACTGATGGTGTTTGGATCGACTTCTCC TATAATTGGTGCCTTCAGAGTTACATCAGATATAAGTACCCTATCCACGCAGAAAGGTTTATTCGAAAACATTATCACCG TAAAAAGTGTCTTTCAAGGTAGTTGAGGTTGAACATGTGCGAGTCAAAAGGGTCAACTCAACTTGGGCAGGTTGTCTAAC TAGGTTTAGTAGGTACTCTACACAAGTCGAAAGGGGAGAAACCACGTTTGACATACTTTAAGATTATTAGCTTAATGTAT TTCTGAATCCGAAGACAGTGTAATCTATCTGTCTTTGTTGGTTTAATACAAGTCATCTTGGCAATGTGTGATAGTTATGA ACTTAAAAGGTAAAGCAATTCTGTTTTTTTTTCTTCTTCCTGGCTCTGATATTTAGTTGGAGACACACAACAACAACAAC AAAAAAACAAAAGTCCTATCTCACTAAGGTATGGGGTGAGATGAGATTGAATGGTTTTATTTGGTTTTTAAAATGAGGAT AAATTAGAATGGAAGGTGGTGAAATGAAATGGTGGAAGGTGATATAAAATGTCCATC
CDS sequence (LotjaGi1g1v0357800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTCCTCTTCTTCGCAGACAGGTTCTTCTGCTTCGCGGTTGCTTCCAAAACCACACTGCCGGAGCCGTTGCGGC GCGCCACCGGAAGTGGTTCAGCGCCGCCACAAACTCACCGTCGAATGAGGCTGAGGCGGAGGAGAAAGTAAGCCCCAGCA CCACCTTCAATCTCCGGGAGAATGACCCCGACAGTCGGAAATGGAGGGATATTGAAGAGGAGATTCTCAGAGACATTGAA CCCATCGTTTTGCTTGCCAAGGACATTCTTCACTCACCAAGGTATATGAATGGACAGATACTGGATATGGAGGAGGAGAA AGCTATAGTAGAGAAGCTTCTTGCTTATCATCCAGAATCTGAAGATAAGATTGGGTGTGGTATTGAATCCATTATGGTTG ACCGTCACCCTGAATTTCGGCACTCAAAGCGTCTTTTTGTTGTAAGAACTGATGGTGTTTGGATCGACTTCTCCTATAAT TGGTGCCTTCAGAGTTACATCAGATATAAGTACCCTATCCACGCAGAAAGGTTTATTCGAAAACATTATCACCGTAAAAA GTGTCTTTCAAGGTAG
Protein sequence (LotjaGi1g1v0357800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPLLRRQVLLLRGCFQNHTAGAVAARHRKWFSAATNSPSNEAEAEEKVSPSTTFNLRENDPDSRKWRDIEEEILRDIE PIVLLAKDILHSPRYMNGQILDMEEEKAIVEKLLAYHPESEDKIGCGIESIMVDRHPEFRHSKRLFVVRTDGVWIDFSYN WCLQSYIRYKYPIHAERFIRKHYHRKKCLSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 185 | 185 | 5.7E-72 | – | |
| PANTHER | 1 | 185 | 185 | 5.7E-72 | – | |
| MobiDBLite | 37 | 59 | 23 | - | – | |
| MobiDBLite | 37 | 63 | 27 | - | – | |
| Gene3D | 82 | 170 | 89 | 7.6E-20 | – | |
| Pfam | 87 | 163 | 77 | 1.0E-23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0357800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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