Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0362100 |
| Transcript ID | LotjaGi1g1v0362100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heptahelical transmembrane protein 4; TAIR: AT4G37680.3 heptahelical protein 4; Swiss-Prot: sp|Q9SZG0|HHP4_ARATH Heptahelical transmembrane protein 4; TrEMBL-Plants: tr|A0A151TTM2|A0A151TTM2_CAJCA Adiponectin receptor protein 2; Found in the gene: LotjaGi1g1v0362100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83664987..83668746) extracted from Lotus japonicus Gifu genome v1.2.
TTTGAGGGCTGCAACTTGTAGAGGCTAGAAATTAGGTATTAGGTGTCATTTTGAGCTGTCTTCAGTGTCATTTCTAATCC CCCCTCTGGTTTGGTGTATGGTTCTATGCCGGGACAACCTCTCCCGGCAAGAATCTTCAATTTTCCCTCACATTTCAATT ATCTCCTTTGATATCTTTTTAATCCAATTAAAATGTCAGGCAAGTCACAATTTATTGTCCTTCAGTTTGTGTTTCTTATG ATCCACGTTAGATTAGATGCATTGCTTACATTGTAAATTTCATGTTTTATTTACACGTGAGTCATTCTCCAGAAGAATGA AATATTGAAATGTGGTCAATAGGTTTTGCCATCTTACAATATCTTTCTTTTGATGCAATATGTGTTTCTAATTTCTAAAT ATAATTGTTATCTGGATTCTTGAAGTTGGCATTTTGAAAAAGCATTTGTGTTGCCCTTTGTACCCTCACTGCAGAGATGA TACGTGGTGCATATGAGGAGTTGATTGTATCCCCCAAAAAAATTGAAAACTTTTTTGATGGTGAAGATGAAAGAGTGTAT TCAAAGGAATTGAAAGGAAGGAGAATGTGGAAAAAATTAAAATATCAGCTTGTAGAGTACAATTCACTGCCAGCATACTT AAAGGACAATGAGTTCATATTGGGATATTATAGAGCAGAGTGGCCATTGAAGCACACCTTCCTCAGCATTTTCTCAATTC ATAATGAGACACTTAATGTCTGGACGTAAGTACTTCAATATAAGCACAGCTGCACAGATATTTTTTTGCAAGTCTGGAAA TCCTTCTACAGAATATTCTAAAAGCAGTTAACCTATCAAATCTTTTAAGAGTGAATCCCTAGAAGAATGAAATACTCCCT CGGTCCCTAATTGTGTTAAATGTCGGTCAGGTTGCAAGGACTAACTGGACCAACGTTTTATCTGACCGTAGGACTAACTT GGACAACAATTAACACAATCAGGGACCACTTTATCTGACTGCATTTTATCTGCTGAAGGTATTTCCTTCTTCTATGGACT ATCTTGCCCGACACTTACTTTTAGGGACGAAATTGGGCATTCACTCACTTGATCTTTTACATTTCATTACCTAAAGCCAA TGACATTGTTTCAGGCATTTGATTGGGTTCTTCCTTTTCCTCTTTCTCACAATATACACAGCTATGAAAGCTCCAACTGT GGTAGATTTCAAATCCCTTCAAAATTTGTCCAAAATGATTCGAAAAGCTGATTTAAGTAAGATTCATATAGAGCTCTTGA AGTTCCTTCCTTCAATGTCCAACATGCCTGATCTTGTTAAATTTAAAAATGAGTTGAGTGCTACAGCTCTTAATTCTTTG GACTTCTCATTATCAGGTTGGAATCTTGTGGAACATCTCACCAAATGCTTGCCAGAGCAGTTTTCCCTAGTAAGTTCTCA TTCCTCTTCATGAAGTATCTTGTGAGATTCTTTTCATCTGTTCTCAAATTGTCATGTACTTTACAACATTAACAAGTAAT TTTTGGAAATGGTAATAGAATAACCACAATGAATCATGCTGTTTAACAAAACAAGTATATAAGAAAGGCTTATAAGAAAT AAGAACCTGAGTCAAATGGTGTATGTATTAGTTGTCAGTTTCCTTTCATACAAATTTTTTTTGTCTAAAGTGAAATGCCA CTTATTAGTTGTTCATATAACCATTGCATAGTTAGTGTGTGTTCAGTTCCCGGGCTGTTCGGGAACCTCAGAATCAATTA TGAAAGAGTAAAATCAATTCTGGATGACAATATAGATGTTTGTGAGTCACTTTAGTGAATTGATTTTTGTTCCAAAATCA ATTTTAATAGAAGCCGGAGAGAGTAGATTCTGCGTTGAGCGTAATCAATGGTGAGATTTCACAACATTATCCTACAAAAA TCACTTTTTGCATAAATCAAATACCAATTTTACTATAATCATTTTTTCCAAAATCAATGGTGACAATTTTGATCCAAACA CTTGAAAATGTTTTCACAATTGATTCTAAAACCAAAATCAATTCTGGGGTGAAGCTTCTTGAGTAATTTCTGAATGACAG AATTCAGTTTGAGGAAAGAAAAGTTTATCGAAACATATTATTAGTTGTGCATATAACCCTGGCAGAGTTAACTTTTTTCA AGTATTTTGATATATTTTGACTTTGCTTCAAGTTCATTCAATGTTATGCTTACATTTTATTTCAGTAAGTTGTATGGTGT TGCATTGTTTTATACTAGACGTTACCAATTTTCATTGAGATTAGGAGACATTGATTTCTCACAATTTTGATATTGTTACA GAATGGTGTGAAAGATGATACAATATCCACCTTAATAGTCAAACCAATTACAAGGTGGCCTTTTTATGCCTTCTTAGGTG GTGCCATGTTCTGTTTGCTAGCCAGCAGCACATGCCACCTCTTTGCTTGTCACTCACAGCGGCTCTCCTACATCATGCTC AGAATAGACTATGCAGGAATTGCAGCATTAATTGCAACTTCATTTTACCCTCTTGTGTATTACTCATTCATGTGCAACCC CTTTTTCTGCTACCTCTACTTAGGCTTCATAACACTAATGGGGATTGCTACCATTGCCTTCTCTCTTCTCCCATTTTTCC AAAAGGCTGAGTTTAGAAAGTACCGTGCTTCACTCTTCTTCTTAATGGGGTTTTCAGGCGTGGTTCCGATAATTCATAAG GTGATACTGCACAAGCATCAACCTGAGGCTTTGCAAACTACTGGCTATGAGATATTGATGGGAGTTCTTTATGGTTTGGG AGCTCTGATCTATGTTACGAGGATACCAGAGAGATGGCGGCCTGGGAAGTTTGATATTGCTGGACATAGTCACCAGCTTT TTCATGTGTTGGTTGTGGCAGGGGCTTACACACACTATCAAGCTGGGTTGGTCTACCTGAGATGGAGAGATTTGAAAGGT TGTTAGCAGGGTTTTAAATTGTAGTTGTGGTCGCGGTTGCGGCTACATTTTGGAATTGCTGACAAATATGAGTTGAAAAG GCCGCAATTGCAATCGTAATTTCATTGCAGTAACTTCACATTTACATTGCGGACCGCAATTTAAAACCCTTGTTGTTAGG TGATAGGTAATGAATGTTAGCTATCAATTGGAGGAAACAACGAAGAATAGTGTTTGATTCACTCTTATTGGGGATACACC ACATTTATTGACATGTAAATATGACTATGATGAGAAAAGAGAGATGTGGTGAGACATGTAATAGAAAAGGAAGAGATACA GAAAGCTATAAAGTGAGTGTAGAAAGTGGTACCATGTGGAATACCCTTCATTGCTCTTTGCTGTGTTGGACAGCTGAATG TGTGAACAAACAAGCCCATAATGCAGAGTCAGGAAGGAGCTAAGAGGTGACATGGAAATGCTGTGGTATCCCAAGTTTGT TGTAATGTATTACATGTAGCTAATTCACGTAGGAGGGGGCCTTTTATTTGTTGGAATTCATGTGGTTTACATCAAATTGG AGTAATAATTAAGTGTGTCTTAGATTGACCTTAATTTACTAAGATAGAAATCAGGGATAAATGAGAAAAGTGATTTGTGT TGGTAATTTTGTGAAATATAATTATAAAATCTCACAATTGATCATGTCCACTCAAATACTAAAATCTGTAGCTTCATCTC AGAAATGATTTTTAAGCTTCAATCTATTGTGAAAAGAAACCACCAAAACCAAAAATTGACTCTGGTGTGGAGAATTGATT
CDS sequence (LotjaGi1g1v0362100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACGTGGTGCATATGAGGAGTTGATTGTATCCCCCAAAAAAATTGAAAACTTTTTTGATGGTGAAGATGAAAGAGT GTATTCAAAGGAATTGAAAGGAAGGAGAATGTGGAAAAAATTAAAATATCAGCTTGTAGAGTACAATTCACTGCCAGCAT ACTTAAAGGACAATGAGTTCATATTGGGATATTATAGAGCAGAGTGGCCATTGAAGCACACCTTCCTCAGCATTTTCTCA ATTCATAATGAGACACTTAATGTCTGGACGCATTTGATTGGGTTCTTCCTTTTCCTCTTTCTCACAATATACACAGCTAT GAAAGCTCCAACTGTGGTAGATTTCAAATCCCTTCAAAATTTGTCCAAAATGATTCGAAAAGCTGATTTAAGTTGGAATC TTGTGGAACATCTCACCAAATGCTTGCCAGAGCAGTTTTCCCTAAATGGTGTGAAAGATGATACAATATCCACCTTAATA GTCAAACCAATTACAAGGTGGCCTTTTTATGCCTTCTTAGGTGGTGCCATGTTCTGTTTGCTAGCCAGCAGCACATGCCA CCTCTTTGCTTGTCACTCACAGCGGCTCTCCTACATCATGCTCAGAATAGACTATGCAGGAATTGCAGCATTAATTGCAA CTTCATTTTACCCTCTTGTGTATTACTCATTCATGTGCAACCCCTTTTTCTGCTACCTCTACTTAGGCTTCATAACACTA ATGGGGATTGCTACCATTGCCTTCTCTCTTCTCCCATTTTTCCAAAAGGCTGAGTTTAGAAAGTACCGTGCTTCACTCTT CTTCTTAATGGGGTTTTCAGGCGTGGTTCCGATAATTCATAAGGTGATACTGCACAAGCATCAACCTGAGGCTTTGCAAA CTACTGGCTATGAGATATTGATGGGAGTTCTTTATGGTTTGGGAGCTCTGATCTATGTTACGAGGATACCAGAGAGATGG CGGCCTGGGAAGTTTGATATTGCTGGACATAGTCACCAGCTTTTTCATGTGTTGGTTGTGGCAGGGGCTTACACACACTA TCAAGCTGGGTTGGTCTACCTGAGATGGAGAGATTTGAAAGGTTGTTAG
Protein sequence (LotjaGi1g1v0362100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRGAYEELIVSPKKIENFFDGEDERVYSKELKGRRMWKKLKYQLVEYNSLPAYLKDNEFILGYYRAEWPLKHTFLSIFS IHNETLNVWTHLIGFFLFLFLTIYTAMKAPTVVDFKSLQNLSKMIRKADLSWNLVEHLTKCLPEQFSLNGVKDDTISTLI VKPITRWPFYAFLGGAMFCLLASSTCHLFACHSQRLSYIMLRIDYAGIAALIATSFYPLVYYSFMCNPFFCYLYLGFITL MGIATIAFSLLPFFQKAEFRKYRASLFFLMGFSGVVPIIHKVILHKHQPEALQTTGYEILMGVLYGLGALIYVTRIPERW RPGKFDIAGHSHQLFHVLVVAGAYTHYQAGLVYLRWRDLKGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 85 | 85 | - | – | |
| PANTHER | 3 | 144 | 142 | 1.6E-200 | ||
| PANTHER | 3 | 144 | 142 | 1.6E-200 | – | |
| Pfam | 79 | 347 | 269 | 8.8E-68 | ||
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 86 | 107 | 22 | - | – | |
| Phobius | 108 | 168 | 61 | - | – | |
| PANTHER | 145 | 362 | 218 | 1.6E-200 | ||
| PANTHER | 145 | 362 | 218 | 1.6E-200 | – | |
| Phobius | 169 | 191 | 23 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 192 | 202 | 11 | - | – | |
| TMHMM | 198 | 220 | 23 | - | – | |
| Phobius | 203 | 220 | 18 | - | – | |
| Phobius | 221 | 231 | 11 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 232 | 254 | 23 | - | – | |
| Phobius | 255 | 265 | 11 | - | – | |
| TMHMM | 265 | 284 | 20 | - | – | |
| Phobius | 266 | 284 | 19 | - | – | |
| Phobius | 285 | 295 | 11 | - | – | |
| TMHMM | 294 | 313 | 20 | - | – | |
| Phobius | 296 | 313 | 18 | - | – | |
| Phobius | 314 | 333 | 20 | - | – | |
| TMHMM | 334 | 356 | 23 | - | – | |
| Phobius | 334 | 356 | 23 | - | – | |
| Phobius | 357 | 362 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0362100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…