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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0362100 |
| Transcript ID | LotjaGi1g1v0362100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heptahelical transmembrane protein 4; TAIR: AT4G37680.1 heptahelical protein 4; Swiss-Prot: sp|Q9SZG0|HHP4_ARATH Heptahelical transmembrane protein 4; TrEMBL-Plants: tr|A0A151TTM2|A0A151TTM2_CAJCA Adiponectin receptor protein 2; Found in the gene: LotjaGi1g1v0362100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83665001..83668654) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTAGAGGCTAGAAATTAGGTATTAGGTGTCATTTTGAGCTGTCTTCAGTGTCATTTCTAATCCCCCCTCTGGTTTGG TGTATGGTTCTATGCCGGGACAACCTCTCCCGGCAAGAATCTTCAATTTTCCCTCACATTTCAATTATCTCCTTTGATAT CTTTTTAATCCAATTAAAATGTCAGGCAAGTCACAATTTATTGTCCTTCAGTTTGTGTTTCTTATGATCCACGTTAGATT AGATGCATTGCTTACATTGTAAATTTCATGTTTTATTTACACGTGAGTCATTCTCCAGAAGAATGAAATATTGAAATGTG GTCAATAGGTTTTGCCATCTTACAATATCTTTCTTTTGATGCAATATGTGTTTCTAATTTCTAAATATAATTGTTATCTG GATTCTTGAAGTTGGCATTTTGAAAAAGCATTTGTGTTGCCCTTTGTACCCTCACTGCAGAGATGATACGTGGTGCATAT GAGGAGTTGATTGTATCCCCCAAAAAAATTGAAAACTTTTTTGATGGTGAAGATGAAAGAGTGTATTCAAAGGAATTGAA AGGAAGGAGAATGTGGAAAAAATTAAAATATCAGCTTGTAGAGTACAATTCACTGCCAGCATACTTAAAGGACAATGAGT TCATATTGGGATATTATAGAGCAGAGTGGCCATTGAAGCACACCTTCCTCAGCATTTTCTCAATTCATAATGAGACACTT AATGTCTGGACGTAAGTACTTCAATATAAGCACAGCTGCACAGATATTTTTTTGCAAGTCTGGAAATCCTTCTACAGAAT ATTCTAAAAGCAGTTAACCTATCAAATCTTTTAAGAGTGAATCCCTAGAAGAATGAAATACTCCCTCGGTCCCTAATTGT GTTAAATGTCGGTCAGGTTGCAAGGACTAACTGGACCAACGTTTTATCTGACCGTAGGACTAACTTGGACAACAATTAAC ACAATCAGGGACCACTTTATCTGACTGCATTTTATCTGCTGAAGGTATTTCCTTCTTCTATGGACTATCTTGCCCGACAC TTACTTTTAGGGACGAAATTGGGCATTCACTCACTTGATCTTTTACATTTCATTACCTAAAGCCAATGACATTGTTTCAG GCATTTGATTGGGTTCTTCCTTTTCCTCTTTCTCACAATATACACAGCTATGAAAGCTCCAACTGTGGTAGATTTCAAAT CCCTTCAAAATTTGTCCAAAATGATTCGAAAAGCTGATTTAAGTAAGATTCATATAGAGCTCTTGAAGTTCCTTCCTTCA ATGTCCAACATGCCTGATCTTGTTAAATTTAAAAATGAGTTGAGTGCTACAGCTCTTAATTCTTTGGACTTCTCATTATC AGGTTGGAATCTTGTGGAACATCTCACCAAATGCTTGCCAGAGCAGTTTTCCCTAGTAAGTTCTCATTCCTCTTCATGAA GTATCTTGTGAGATTCTTTTCATCTGTTCTCAAATTGTCATGTACTTTACAACATTAACAAGTAATTTTTGGAAATGGTA ATAGAATAACCACAATGAATCATGCTGTTTAACAAAACAAGTATATAAGAAAGGCTTATAAGAAATAAGAACCTGAGTCA AATGGTGTATGTATTAGTTGTCAGTTTCCTTTCATACAAATTTTTTTTGTCTAAAGTGAAATGCCACTTATTAGTTGTTC ATATAACCATTGCATAGTTAGTGTGTGTTCAGTTCCCGGGCTGTTCGGGAACCTCAGAATCAATTATGAAAGAGTAAAAT CAATTCTGGATGACAATATAGATGTTTGTGAGTCACTTTAGTGAATTGATTTTTGTTCCAAAATCAATTTTAATAGAAGC CGGAGAGAGTAGATTCTGCGTTGAGCGTAATCAATGGTGAGATTTCACAACATTATCCTACAAAAATCACTTTTTGCATA AATCAAATACCAATTTTACTATAATCATTTTTTCCAAAATCAATGGTGACAATTTTGATCCAAACACTTGAAAATGTTTT CACAATTGATTCTAAAACCAAAATCAATTCTGGGGTGAAGCTTCTTGAGTAATTTCTGAATGACAGAATTCAGTTTGAGG AAAGAAAAGTTTATCGAAACATATTATTAGTTGTGCATATAACCCTGGCAGAGTTAACTTTTTTCAAGTATTTTGATATA TTTTGACTTTGCTTCAAGTTCATTCAATGTTATGCTTACATTTTATTTCAGTAAGTTGTATGGTGTTGCATTGTTTTATA CTAGACGTTACCAATTTTCATTGAGATTAGGAGACATTGATTTCTCACAATTTTGATATTGTTACAGAATGGTGTGAAAG ATGATACAATATCCACCTTAATAGTCAAACCAATTACAAGGTGGCCTTTTTATGCCTTCTTAGGTGGTGCCATGTTCTGT TTGCTAGCCAGCAGCACATGCCACCTCTTTGCTTGTCACTCACAGCGGCTCTCCTACATCATGCTCAGAATAGACTATGC AGGAATTGCAGCATTAATTGCAACTTCATTTTACCCTCTTGTGTATTACTCATTCATGTGCAACCCCTTTTTCTGCTACC TCTACTTAGGCTTCATAACACTAATGGGGATTGCTACCATTGCCTTCTCTCTTCTCCCATTTTTCCAAAAGGCTGAGTTT AGAAAGTACCGTGCTTCACTCTTCTTCTTAATGGGGTTTTCAGGCGTGGTTCCGATAATTCATAAGGTGATACTGCACAA GCATCAACCTGAGGCTTTGCAAACTACTGGCTATGAGATATTGATGGGAGTTCTTTATGGTTTGGGAGCTCTGATCTATG TTACGAGGATACCAGAGAGATGGCGGCCTGGGAAGTTTGATATTGCTGGACATAGTCACCAGCTTTTTCATGTGTTGGTT GTGGCAGGGGCTTACACACACTATCAAGCTGGGTTGGTCTACCTGAGATGGAGAGATTTGAAAGGTTGTTAGCAGGGTTT TAAATTGTAGTTGTGGTCGCGGTTGCGGCTACATTTTGGAATTGCTGACAAATATGAGTTGAAAAGGCCGCAATTGCAAT CGTAATTTCATTGCAGTAACTTCACATTTACATTGCGGACCGCAATTTAAAACCCTTGTTGTTAGGTGATAGGTAATGAA TGTTAGCTATCAATTGGAGGAAACAACGAAGAATAGTGTTTGATTCACTCTTATTGGGGATACACCACATTTATTGACAT GTAAATATGACTATGATGAGAAAAGAGAGATGTGGTGAGACATGTAATAGAAAAGGAAGAGATACAGAAAGCTATAAAGT GAGTGTAGAAAGTGGTACCATGTGGAATACCCTTCATTGCTCTTTGCTGTGTTGGACAGCTGAATGTGTGAACAAACAAG CCCATAATGCAGAGTCAGGAAGGAGCTAAGAGGTGACATGGAAATGCTGTGGTATCCCAAGTTTGTTGTAATGTATTACA TGTAGCTAATTCACGTAGGAGGGGGCCTTTTATTTGTTGGAATTCATGTGGTTTACATCAAATTGGAGTAATAATTAAGT GTGTCTTAGATTGACCTTAATTTACTAAGATAGAAATCAGGGATAAATGAGAAAAGTGATTTGTGTTGGTAATTTTGTGA AATATAATTATAAAATCTCACAATTGATCATGTCCACTCAAATACTAAAATCTG
CDS sequence (LotjaGi1g1v0362100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGAGATGATACGTGGTGCATATGAGGAGTTGATTGTATCCCCCAAAAAAATTGAAAACTTTTTTGATGGTGAAGA TGAAAGAGTGTATTCAAAGGAATTGAAAGGAAGGAGAATGTGGAAAAAATTAAAATATCAGCTTGTAGAGTACAATTCAC TGCCAGCATACTTAAAGGACAATGAGTTCATATTGGGATATTATAGAGCAGAGTGGCCATTGAAGCACACCTTCCTCAGC ATTTTCTCAATTCATAATGAGACACTTAATGTCTGGACGCATTTGATTGGGTTCTTCCTTTTCCTCTTTCTCACAATATA CACAGCTATGAAAGCTCCAACTGTGGTAGATTTCAAATCCCTTCAAAATTTGTCCAAAATGATTCGAAAAGCTGATTTAA GTTGGAATCTTGTGGAACATCTCACCAAATGCTTGCCAGAGCAGTTTTCCCTAAATGGTGTGAAAGATGATACAATATCC ACCTTAATAGTCAAACCAATTACAAGGTGGCCTTTTTATGCCTTCTTAGGTGGTGCCATGTTCTGTTTGCTAGCCAGCAG CACATGCCACCTCTTTGCTTGTCACTCACAGCGGCTCTCCTACATCATGCTCAGAATAGACTATGCAGGAATTGCAGCAT TAATTGCAACTTCATTTTACCCTCTTGTGTATTACTCATTCATGTGCAACCCCTTTTTCTGCTACCTCTACTTAGGCTTC ATAACACTAATGGGGATTGCTACCATTGCCTTCTCTCTTCTCCCATTTTTCCAAAAGGCTGAGTTTAGAAAGTACCGTGC TTCACTCTTCTTCTTAATGGGGTTTTCAGGCGTGGTTCCGATAATTCATAAGGTGATACTGCACAAGCATCAACCTGAGG CTTTGCAAACTACTGGCTATGAGATATTGATGGGAGTTCTTTATGGTTTGGGAGCTCTGATCTATGTTACGAGGATACCA GAGAGATGGCGGCCTGGGAAGTTTGATATTGCTGGACATAGTCACCAGCTTTTTCATGTGTTGGTTGTGGCAGGGGCTTA CACACACTATCAAGCTGGGTTGGTCTACCTGAGATGGAGAGATTTGAAAGGTTGTTAG
Protein sequence (LotjaGi1g1v0362100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEMIRGAYEELIVSPKKIENFFDGEDERVYSKELKGRRMWKKLKYQLVEYNSLPAYLKDNEFILGYYRAEWPLKHTFLS IFSIHNETLNVWTHLIGFFLFLFLTIYTAMKAPTVVDFKSLQNLSKMIRKADLSWNLVEHLTKCLPEQFSLNGVKDDTIS TLIVKPITRWPFYAFLGGAMFCLLASSTCHLFACHSQRLSYIMLRIDYAGIAALIATSFYPLVYYSFMCNPFFCYLYLGF ITLMGIATIAFSLLPFFQKAEFRKYRASLFFLMGFSGVVPIIHKVILHKHQPEALQTTGYEILMGVLYGLGALIYVTRIP ERWRPGKFDIAGHSHQLFHVLVVAGAYTHYQAGLVYLRWRDLKGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 88 | 88 | - | – | |
| PANTHER | 6 | 147 | 142 | 1.6E-200 | ||
| PANTHER | 6 | 147 | 142 | 1.6E-200 | – | |
| Pfam | 82 | 350 | 269 | 9.0E-68 | ||
| TMHMM | 88 | 110 | 23 | - | – | |
| Phobius | 89 | 110 | 22 | - | – | |
| Phobius | 111 | 171 | 61 | - | – | |
| PANTHER | 148 | 365 | 218 | 1.6E-200 | ||
| PANTHER | 148 | 365 | 218 | 1.6E-200 | – | |
| TMHMM | 172 | 194 | 23 | - | – | |
| Phobius | 172 | 194 | 23 | - | – | |
| Phobius | 195 | 205 | 11 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 206 | 223 | 18 | - | – | |
| Phobius | 224 | 234 | 11 | - | – | |
| TMHMM | 233 | 255 | 23 | - | – | |
| Phobius | 235 | 257 | 23 | - | – | |
| Phobius | 258 | 268 | 11 | - | – | |
| TMHMM | 268 | 287 | 20 | - | – | |
| Phobius | 269 | 287 | 19 | - | – | |
| Phobius | 288 | 298 | 11 | - | – | |
| TMHMM | 297 | 316 | 20 | - | – | |
| Phobius | 299 | 316 | 18 | - | – | |
| Phobius | 317 | 336 | 20 | - | – | |
| Phobius | 337 | 359 | 23 | - | – | |
| TMHMM | 337 | 359 | 23 | - | – | |
| Phobius | 360 | 365 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0362100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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