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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0362100 |
| Transcript ID | LotjaGi1g1v0362100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heptahelical transmembrane protein 4; TAIR: AT4G37680.1 heptahelical protein 4; Swiss-Prot: sp|Q9SZG0|HHP4_ARATH Heptahelical transmembrane protein 4; TrEMBL-Plants: tr|A0A151TTM2|A0A151TTM2_CAJCA Adiponectin receptor protein 2; Found in the gene: LotjaGi1g1v0362100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83665393..83668621) extracted from Lotus japonicus Gifu genome v1.2.
GTTATCTGGATTCTTGAAGTTGGCATTTTGAAAAAGCATTTGTGTTGCCCTTTGTACCCTCACTGCAGAGATGATACGTG GTGCATATGAGGAGTTGATTGTATCCCCCAAAAAAATTGAAAACTTTTTTGATGGTGAAGATGAAAGAGTGTATTCAAAG GAATTGAAAGGAAGGAGAATGTGGAAAAAATTAAAATATCAGCTTGTAGAGTACAATTCACTGCCAGCATACTTAAAGGA CAATGAGTTCATATTGGGATATTATAGAGCAGAGTGGCCATTGAAGCACACCTTCCTCAGCATTTTCTCAATTCATAATG AGACACTTAATGTCTGGACGTAAGTACTTCAATATAAGCACAGCTGCACAGATATTTTTTTGCAAGTCTGGAAATCCTTC TACAGAATATTCTAAAAGCAGTTAACCTATCAAATCTTTTAAGAGTGAATCCCTAGAAGAATGAAATACTCCCTCGGTCC CTAATTGTGTTAAATGTCGGTCAGGTTGCAAGGACTAACTGGACCAACGTTTTATCTGACCGTAGGACTAACTTGGACAA CAATTAACACAATCAGGGACCACTTTATCTGACTGCATTTTATCTGCTGAAGGTATTTCCTTCTTCTATGGACTATCTTG CCCGACACTTACTTTTAGGGACGAAATTGGGCATTCACTCACTTGATCTTTTACATTTCATTACCTAAAGCCAATGACAT TGTTTCAGGCATTTGATTGGGTTCTTCCTTTTCCTCTTTCTCACAATATACACAGCTATGAAAGCTCCAACTGTGGTAGA TTTCAAATCCCTTCAAAATTTGTCCAAAATGATTCGAAAAGCTGATTTAAGTAAGATTCATATAGAGCTCTTGAAGTTCC TTCCTTCAATGTCCAACATGCCTGATCTTGTTAAATTTAAAAATGAGTTGAGTGCTACAGCTCTTAATTCTTTGGACTTC TCATTATCAGGTTGGAATCTTGTGGAACATCTCACCAAATGCTTGCCAGAGCAGTTTTCCCTAGTAAGTTCTCATTCCTC TTCATGAAGTATCTTGTGAGATTCTTTTCATCTGTTCTCAAATTGTCATGTACTTTACAACATTAACAAGTAATTTTTGG AAATGGTAATAGAATAACCACAATGAATCATGCTGTTTAACAAAACAAGTATATAAGAAAGGCTTATAAGAAATAAGAAC CTGAGTCAAATGGTGTATGTATTAGTTGTCAGTTTCCTTTCATACAAATTTTTTTTGTCTAAAGTGAAATGCCACTTATT AGTTGTTCATATAACCATTGCATAGTTAGTGTGTGTTCAGTTCCCGGGCTGTTCGGGAACCTCAGAATCAATTATGAAAG AGTAAAATCAATTCTGGATGACAATATAGATGTTTGTGAGTCACTTTAGTGAATTGATTTTTGTTCCAAAATCAATTTTA ATAGAAGCCGGAGAGAGTAGATTCTGCGTTGAGCGTAATCAATGGTGAGATTTCACAACATTATCCTACAAAAATCACTT TTTGCATAAATCAAATACCAATTTTACTATAATCATTTTTTCCAAAATCAATGGTGACAATTTTGATCCAAACACTTGAA AATGTTTTCACAATTGATTCTAAAACCAAAATCAATTCTGGGGTGAAGCTTCTTGAGTAATTTCTGAATGACAGAATTCA GTTTGAGGAAAGAAAAGTTTATCGAAACATATTATTAGTTGTGCATATAACCCTGGCAGAGTTAACTTTTTTCAAGTATT TTGATATATTTTGACTTTGCTTCAAGTTCATTCAATGTTATGCTTACATTTTATTTCAGTAAGTTGTATGGTGTTGCATT GTTTTATACTAGACGTTACCAATTTTCATTGAGATTAGGAGACATTGATTTCTCACAATTTTGATATTGTTACAGAATGG TGTGAAAGATGATACAATATCCACCTTAATAGTCAAACCAATTACAAGGTGGCCTTTTTATGCCTTCTTAGGTGGTGCCA TGTTCTGTTTGCTAGCCAGCAGCACATGCCACCTCTTTGCTTGTCACTCACAGCGGCTCTCCTACATCATGCTCAGAATA GACTATGCAGGAATTGCAGCATTAATTGCAACTTCATTTTACCCTCTTGTGTATTACTCATTCATGTGCAACCCCTTTTT CTGCTACCTCTACTTAGGCTTCATAACACTAATGGGGATTGCTACCATTGCCTTCTCTCTTCTCCCATTTTTCCAAAAGG CTGAGTTTAGAAAGTACCGTGCTTCACTCTTCTTCTTAATGGGGTTTTCAGGCGTGGTTCCGATAATTCATAAGGTGATA CTGCACAAGCATCAACCTGAGGCTTTGCAAACTACTGGCTATGAGATATTGATGGGAGTTCTTTATGGTTTGGGAGCTCT GATCTATGTTACGAGGATACCAGAGAGATGGCGGCCTGGGAAGTTTGATATTGCTGGACATAGTCACCAGCTTTTTCATG TGTTGGTTGTGGCAGGGGCTTACACACACTATCAAGCTGGGTTGGTCTACCTGAGATGGAGAGATTTGAAAGGTTGTTAG CAGGGTTTTAAATTGTAGTTGTGGTCGCGGTTGCGGCTACATTTTGGAATTGCTGACAAATATGAGTTGAAAAGGCCGCA ATTGCAATCGTAATTTCATTGCAGTAACTTCACATTTACATTGCGGACCGCAATTTAAAACCCTTGTTGTTAGGTGATAG GTAATGAATGTTAGCTATCAATTGGAGGAAACAACGAAGAATAGTGTTTGATTCACTCTTATTGGGGATACACCACATTT ATTGACATGTAAATATGACTATGATGAGAAAAGAGAGATGTGGTGAGACATGTAATAGAAAAGGAAGAGATACAGAAAGC TATAAAGTGAGTGTAGAAAGTGGTACCATGTGGAATACCCTTCATTGCTCTTTGCTGTGTTGGACAGCTGAATGTGTGAA CAAACAAGCCCATAATGCAGAGTCAGGAAGGAGCTAAGAGGTGACATGGAAATGCTGTGGTATCCCAAGTTTGTTGTAAT GTATTACATGTAGCTAATTCACGTAGGAGGGGGCCTTTTATTTGTTGGAATTCATGTGGTTTACATCAAATTGGAGTAAT AATTAAGTGTGTCTTAGATTGACCTTAATTTACTAAGATAGAAATCAGGGATAAATGAGAAAAGTGATTTGTGTTGGTAA TTTTGTGAAATATAATTATAAAATCTCAC
CDS sequence (LotjaGi1g1v0362100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACGTGGTGCATATGAGGAGTTGATTGTATCCCCCAAAAAAATTGAAAACTTTTTTGATGGTGAAGATGAAAGAGT GTATTCAAAGGAATTGAAAGGAAGGAGAATGTGGAAAAAATTAAAATATCAGCTTGTAGAGTACAATTCACTGCCAGCAT ACTTAAAGGACAATGAGTTCATATTGGGATATTATAGAGCAGAGTGGCCATTGAAGCACACCTTCCTCAGCATTTTCTCA ATTCATAATGAGACACTTAATGTCTGGACGCATTTGATTGGGTTCTTCCTTTTCCTCTTTCTCACAATATACACAGCTAT GAAAGCTCCAACTGTGGTAGATTTCAAATCCCTTCAAAATTTGTCCAAAATGATTCGAAAAGCTGATTTAAGTAAGATTC ATATAGAGCTCTTGAAGTTCCTTCCTTCAATGTCCAACATGCCTGATCTTGTTAAATTTAAAAATGAGTTGAGTGCTACA GCTCTTAATTCTTTGGACTTCTCATTATCAGGTTGGAATCTTGTGGAACATCTCACCAAATGCTTGCCAGAGCAGTTTTC CCTAAATGGTGTGAAAGATGATACAATATCCACCTTAATAGTCAAACCAATTACAAGGTGGCCTTTTTATGCCTTCTTAG GTGGTGCCATGTTCTGTTTGCTAGCCAGCAGCACATGCCACCTCTTTGCTTGTCACTCACAGCGGCTCTCCTACATCATG CTCAGAATAGACTATGCAGGAATTGCAGCATTAATTGCAACTTCATTTTACCCTCTTGTGTATTACTCATTCATGTGCAA CCCCTTTTTCTGCTACCTCTACTTAGGCTTCATAACACTAATGGGGATTGCTACCATTGCCTTCTCTCTTCTCCCATTTT TCCAAAAGGCTGAGTTTAGAAAGTACCGTGCTTCACTCTTCTTCTTAATGGGGTTTTCAGGCGTGGTTCCGATAATTCAT AAGGTGATACTGCACAAGCATCAACCTGAGGCTTTGCAAACTACTGGCTATGAGATATTGATGGGAGTTCTTTATGGTTT GGGAGCTCTGATCTATGTTACGAGGATACCAGAGAGATGGCGGCCTGGGAAGTTTGATATTGCTGGACATAGTCACCAGC TTTTTCATGTGTTGGTTGTGGCAGGGGCTTACACACACTATCAAGCTGGGTTGGTCTACCTGAGATGGAGAGATTTGAAA GGTTGTTAG
Protein sequence (LotjaGi1g1v0362100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRGAYEELIVSPKKIENFFDGEDERVYSKELKGRRMWKKLKYQLVEYNSLPAYLKDNEFILGYYRAEWPLKHTFLSIFS IHNETLNVWTHLIGFFLFLFLTIYTAMKAPTVVDFKSLQNLSKMIRKADLSKIHIELLKFLPSMSNMPDLVKFKNELSAT ALNSLDFSLSGWNLVEHLTKCLPEQFSLNGVKDDTISTLIVKPITRWPFYAFLGGAMFCLLASSTCHLFACHSQRLSYIM LRIDYAGIAALIATSFYPLVYYSFMCNPFFCYLYLGFITLMGIATIAFSLLPFFQKAEFRKYRASLFFLMGFSGVVPIIH KVILHKHQPEALQTTGYEILMGVLYGLGALIYVTRIPERWRPGKFDIAGHSHQLFHVLVVAGAYTHYQAGLVYLRWRDLK GC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 85 | 85 | - | – | |
| PANTHER | 3 | 402 | 400 | 1.9E-206 | ||
| PANTHER | 3 | 402 | 400 | 1.9E-206 | – | |
| Pfam | 79 | 387 | 309 | 2.3E-69 | ||
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 86 | 107 | 22 | - | – | |
| Phobius | 108 | 208 | 101 | - | – | |
| TMHMM | 209 | 231 | 23 | - | – | |
| Phobius | 209 | 231 | 23 | - | – | |
| Phobius | 232 | 242 | 11 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 243 | 260 | 18 | - | – | |
| Phobius | 261 | 271 | 11 | - | – | |
| TMHMM | 270 | 292 | 23 | - | – | |
| Phobius | 272 | 294 | 23 | - | – | |
| Phobius | 295 | 305 | 11 | - | – | |
| TMHMM | 305 | 324 | 20 | - | – | |
| Phobius | 306 | 324 | 19 | - | – | |
| Phobius | 325 | 335 | 11 | - | – | |
| TMHMM | 334 | 353 | 20 | - | – | |
| Phobius | 336 | 353 | 18 | - | – | |
| Phobius | 354 | 373 | 20 | - | – | |
| TMHMM | 374 | 396 | 23 | - | – | |
| Phobius | 374 | 396 | 23 | - | – | |
| Phobius | 397 | 402 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0362100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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