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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0365400 |
| Transcript ID | LotjaGi1g1v0365400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein EARLY FLOWERING 3; TAIR: AT2G25930.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|O82804|ELF3_ARATH Protein EARLY FLOWERING 3; TrEMBL-Plants: tr|A0A0B2RBI0|A0A0B2RBI0_GLYSO Protein EARLY FLOWERING 3; Found in the gene: LotjaGi1g1v0365400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84294199..84300126) extracted from Lotus japonicus Gifu genome v1.2.
AATAGTAATTTAAGAAACTATGGGTTGGAGCAAAATCTGCTTCAGTTTCTTAGGAGTTTCTTAAGTTTGATGTGGCAGAC AGGGCCCACAGGAATAGTGCTGAATAGTGTGTTAAGAAACCAGATAAGAATTTTAGGGTTGGAGTTGCTCTAAGAAACCA CTCTTTCTCTTTCCCTTCTTCTTCTCTTCTCTCTCTGAAATCCCTAATTTCAACACAACAGTGCTCTCTCTCTCTCCTCT CTCTCTCTTCATCATCATCAAATCTCTTCTCGTTTCTTCGCTTTTTTCACCTGGAATTTGTTTCATTCCTATCTCCCCTT CCAACATCATCTTCTTCTCTCCGAATTTCTCGTTTTTTTCTGCTAATTTTTGTTTTTCTTACACCGATTACTTCTTCCCT TGTTGTCGGTAATCCACTACTCACCATCAAAACTCACCCCTCTTCAGATTTCGGAGCTGCGGTAATCACAGTTTACTTCA ATTTTTTGATTTTGTTCTAGCTGTTACTCTTTTCCCCCCTTTCTCTGCGTTTGGATTTTGATAATTGTGTTTTGAGTTTT TGCAACATCTGAGCAAGATCGAGTGTGTTTTTACTATTTACGAGTCTGGCTGGTAAAAAGTTGAGATTTTGAATCGTTTT GAGCAAGTGGGTCGATTCATTAACTATTAGTTCTTGTGTATGCAGTCTGCTGCAACCCAATTGCTTGATTGGTTTTGGGT TTGTGGATTAGAGGATCATGCTTTGGCTGCTTGTTTGCAATTTGACATAAGAAAAAAAAAGGAGGATTTGGTTAATTTGT TGTGGTATTATTAGGAAGAAGAAGGATGAAGAGAGGGAAAGATGATGAGAAGGTTATGGGGCCATTGTTCCCTAGACTCC ATGTTAGTGATACAGAGAAGGGAGGGCCAAGAGCACCACCAAGGAACAAGATGGCCCTCTATGAGCAGTTTAGTATTCCC TCTCAAAGGTTCAACCAAGGCCTTCTGCCTCCCACCAACACAAACACTTCTAGTAATACAGCTCCCCCAGCATCCTCAAG CCAGGTAATTATTGGGTTCTCTAGTTTTGCATACAGTATTAGTTATTATGATTATTATTTGTTTAGTTTTGATTTGGCTA TTAGGGATTCTTATTTCTTAACATTTTGTGGTGTTCTAATTCCTAGTTTGTGTTACTCTTGTTTTACTGTTGTGTTTTGT ATGTGCTTGATTGTATTTGTGTGTGTGCGTTGAGAGGCGATTGTTTTCGTTTCTGAATGTGTGGATTAACATACTTGTAG GGGGCTGTACATGAGAGAAATTATGTCTTCCCTGTTCAATCGCCTTCACAGACCCCTATTCGTCGCGCTGAAAAACCTGT TTCTCACCAATCCGAAGGGGCAAATCTGAATTCTTCATTGGTTCAACTTGAGCAGAGGAAGAAGGTGGACGAAGATGACT TTACAGTTCCGATATACATTCGTTCAAGGACTGGTCAATCTAGTGATCGAAGTCTTGATGGGAAAAGGCTCAGGTATTTT GGTTGTTCAGTAGCAGAGCAAAATGATTGTGAAAGGGATCTGAAACAGTATGCTCCCTCACTTGTCAATAAGAGAAGAGA TGTAAGAAGCGAAACTGATGGTCTTCCACCAGTAAGTCCAAATAAGGAGCAGCCGTTAATACGTGCCAGAAACACATCAA CTGGAGAAAATATTGACACCTTCAAAAGGCAAGCCAAGGTGACTCCAAATCAAGAGTTTCAAGATTGTACTCTGTCAAAA CCTACCAGATTACAACGAGATGATGCTTGCTTACGGCGGGACTGTGAAGCTGTGTCGCAATCCAATGGCATTGGACAAAG TGGTGGTCTTGTCGAGTCTACTCCAGAGACAGACAAGAGAAATGCGCCTACAGAAAGCCAAACCAGTCCAGGTGAGGCTA TCAATGACACTGAATATCAGAATACTAGGCCTGGCTGTCCAATACGGAGAGGAAGTTTGAACAAAAGTGGCAATGTTTCC AAGATCTCGAGGGTAGAAAATTTGTCAACCCTAAAAGTTTCTCCTGATGATGTTGTTGGACTAATCGGTCAAAAACATTT CTGGAAAGCCCGAAGAGCAATTGTCAAGTAAGTCATGTTGCTTGTCAAGTGTCAACATCATCAAGTTTTGAATGGTCTTA AATGCAAAGTGGCCAAACCTTTACCCATATTTAAGTAGTGGACTCCTTTAATTGCTTAGATCTGAAAGTATCTTGATTGT TGGTTTTGTGAATTTTATAATTTTGGCATAAAACCCTTAATTTCTTTTATGTGGACATGCACAAAGTTGTAGAATATAAA ACCCAAAACTACTAATTTTTTATGGATGTTTGATATGTCCACTGATTTGATTATCCATACTTTATGGAATGTGACATTTC CTCTTTCCTTCCTTCTTTTTTTGCATGCACCTTCTATTAGCTTTGGGTCTCTGGTTAGAGAATATGTGAGAAATGTTCAC TTGAGAAGAAATTTAGGACTGCTTCTATCTGATGGCATTCCTTTTTTCTTTTCTTTTCGCCTTTGGCTAACACAGCATCT TTTATGCATCCTTAATCATGTACTAGGCATGTGGGTTGGATATTTACATTTCAATGAAGGAGTTGTTTGTGGCTTTGAAG AAAGGAAATTTGATAGTCAGGGTCCCTTCTAATTTGGTGTTTTTTTTAACATTGAAAGTGCTTAACACTGTTTTAATGGT GGGTACTGGTTACAACAGGGCAGTGAGCTTAATAATATACTGTGTCTGGTGGGGACCCTTGTGACAAAAGATCATCTCCT GGTTCACTGTCTTCCTAGCAACTGGATTTTGGATATATATTCCTGTCTTGGTTTCCTCTTGCTTGGTTCTCCATGTCACC ACTTGGGCAAGTTTCCTTACACTGCACTGAAGAACTTGAGCTAAGAAGGGGACCAAGTATTGCAGGATGACCCTTGATGT ATGGTAGGGACACTTGGAGAAGTACATGATGAGTCCTCAATAGATGTTATCATTAGTGGATTTCCTCACAACTCCTCTAG TGTCTTGGTTTTCTGTATTTTGAGATATTTTGGGATTGGGATTTTCTTTTATAATACACACAGTAGCTAGCTAGTCAAGG TTTGCTTCCATCTATAGCTCCAACAGATTTCATATCACATTGATGTTTTTGTATGATATTGATGTATATGTGCTTGTCCC TAGAAATTAACTTTACTGCAAATTTTCAAGTGCACTTCTATTGTCAATGTTGAATGCTAATGCTTTGATTGTATGCCCAA TACTTTATAGTGTCTGGTCTTTATTCTGAACAGGTACGAAGAGATTATGCTAATATTTCTTTTGAACAGGCTATATTTTA ATGGCCTTGTATGCGAAGTTTTACTGCTCTAAACCATTTTAGTAAATTTGAATATGTCCAAATTAGGTGTGTTGTCTTTA TTCAGCAAGTGTGGTTATCAGATTCCATGTTAAGATTTTATGAAAATATGATTTATGTGAGTTGTGGACTGGAAGATATT CCGCTTAAACAGTTTATCTGCTGTGATTGGAGAACCTTTAATTTTGGTAGTTAGTGTTTTATATATCGCTGCTAATAACA TGATCATATCTAGTTCGAAATGCTTCATTTTTCATGTTATTTCGATGTATATATGTCTGAAGTTCTCATTTGATGGGTAT TTTGCAATTTTCCTTATCCAACTCATGTTCCTCTCTACAGTCAACAGAGAGTGTTTGCAGTCCAAGTGTTTGAATTGCAT AGACTGATAAAGGTAAATTGTCTTTAACACTATTCAGCAGTTTATGCTAGTCCAAAAAGGGAAGCATGTTAGCTTTTCTT GCACACACACATTTGGAGTTTTTTTATACAGATCAATTCTTTTTACGTAAGCAGGTCCAACAGCTGATTGCTGGATCACC AGATCTTATGCTTGTAGATGGTGCTTTTCTCAGAAAGTCTCCTCCAAAGGGATCTACTCCCAAGAAACTCTCATTGGAAT ATGTGGTTAAACCTCTGCAAGAAAACCTTAAGCGCAATGATTCTGAAAAGCAAAATCATAAAATGGAATGTTCTGCAGAA AATGCAGTTGGTAAAACATCTATTTCATCGGTGAAAAATGGTAGCCACCTTTCACACCACACCCCTTTTCCCGGGAATCC ACCCCAGCCTAATGTGCCTGCCGACAGTGGGATGAGTCCTTGGGGTTTCCATCAGTCACCTGGGCACCAATGGTTAATTC CTGTGATGTCTCCTTCCGAAGGGCTCATCTACAAGCCATATCCTGGGCCTGGATATACAGGAACAAATGGTGGAGGATGT GGGCCTTTTGGGCCTGCTCCTTTGGGTGGTACTTTCATGAATGCTGCCTATGGAATCCCAAATTCTTACCAAGGGATCGG GGTTCCACCAGACGCTCCTCCGGGCAGCCATGCTTATTTCCCTCCCTATGGCATGCCGACTATGAATGCAGCAATGTCAG AGTCAGCTGTTGATCAGGTGAACCAGTTTTCTGCCCTAGAATCTCGGGGGCAAAGTGGCCATATTTCTGGCAGGGAAGCT GATCATAACACACACAATCAGAGTTCATGTGATGTACCAGTGCAGGGAAATGGAGCAACATCACATGTCATGTATCAGCA GACGTACAAGGAGTTTGAGTTACAGGGGAGTAGGACAAGTAGCCCTAGTGAAATGGGGCAAGTTGCTGAAGGAAGAGATG CGCTTCCTCTTTTCCCTACAGTTCCAGTAGAACCAGAGGGAGCCCCTCAGTCTCTTGAAACTGGACAACAAATTCGAGTT ATCAAAGTGGTGCCTCACAACCGAAGATCTGCAACTGCATCAGCAGCTAGAATATTTCAATCGATCCAAGAAGAGAGAAA ACAGTATGACTAAGTCTAGTGTTATTGAGTTGGATCCATTCAAGTAGCTAAAGTGTATGGTCCTGTACTTTCTGGGGGCA TGTAATCATGTAACAGACTATTGTATGTTGTATTTCTGTTTTGGTTTTGACCATTTTACAGCACATTGGTATGAAGATTT ATCTGGCATATCTAATGTAATATTATTATATGTTGTCCCCCATAATTTACACAAGGATTTTTTTGTGTAAGGTTACACAA ACCTAAAATGACCCCTTATCGTAGGTTCATCCGGTTAATTCTTTTTTTTTTTTTAAAAGTTCTTCCTCAACCAGATCTTC TTCTCTCCTCCATGCCCCATGTTCAATGGTTCTTCACACAGATCTCATTCTCCACACAATCTGGTTCTTCAGTTCTTTTT TGTTTCCCTCACTTACGCTCATCTCCACCTCACACGCTTGCAACCACAACGAAAGCCCTTTACCCAACCACACCCTTGCC TCTTTCTCCATCAATACCACCGTCGAGCTTCCCGGAAAACAGAATTCTCCACGGAGATCTGAAAACGACGTTCTGGGTTC ACAGAGCTGGGTTTGGGTTCCAATTCAACTTGTAGGGAGTGAGGAGAAAGTGAACAATGAAGGTGACAGAGAGAAACAAT GTTTTGTTCTATTTGGGAAAAGAGGTAGCAGATTTGGGAAAATTGGGATTTCAATTTCTGGGTTTTCACTGAACAAGGGT TTTTTTCATTGAGAAGGGCTTCTGAAACTGCTTTGTGTTTGTTTCTCGCCGGCTAGTGTAAATGCCTTCTCACAGACCTT CAAATCAAGAAGAAGCTATTTTGTTTTGGGTTTTCTTGAATATAATATTATGAAAGATGTGGAAATGTTGTAATTTTGAA GGAGTCACACGTCAGGAAACAGAGGAACGAAGGAATGGATGATGAAATTAGAATTTTTTTTTGAAACTCATGATGAAATT AGAACGGTGGTGGTAGTGTTGTTGGGAAGAATGGAAAGAGAAGGAAGGGGTGGAGATTTGTGGGGGAGGGAGGAGAAGAT CTGATGGT
CDS sequence (LotjaGi1g1v0365400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGAGGGAAAGATGATGAGAAGGTTATGGGGCCATTGTTCCCTAGACTCCATGTTAGTGATACAGAGAAGGGAGG GCCAAGAGCACCACCAAGGAACAAGATGGCCCTCTATGAGCAGTTTAGTATTCCCTCTCAAAGGTTCAACCAAGGCCTTC TGCCTCCCACCAACACAAACACTTCTAGTAATACAGCTCCCCCAGCATCCTCAAGCCAGGGGGCTGTACATGAGAGAAAT TATGTCTTCCCTGTTCAATCGCCTTCACAGACCCCTATTCGTCGCGCTGAAAAACCTGTTTCTCACCAATCCGAAGGGGC AAATCTGAATTCTTCATTGGTTCAACTTGAGCAGAGGAAGAAGGTGGACGAAGATGACTTTACAGTTCCGATATACATTC GTTCAAGGACTGGTCAATCTAGTGATCGAAGTCTTGATGGGAAAAGGCTCAGGTATTTTGGTTGTTCAGTAGCAGAGCAA AATGATTGTGAAAGGGATCTGAAACAGTATGCTCCCTCACTTGTCAATAAGAGAAGAGATGTAAGAAGCGAAACTGATGG TCTTCCACCAGTAAGTCCAAATAAGGAGCAGCCGTTAATACGTGCCAGAAACACATCAACTGGAGAAAATATTGACACCT TCAAAAGGCAAGCCAAGGTGACTCCAAATCAAGAGTTTCAAGATTGTACTCTGTCAAAACCTACCAGATTACAACGAGAT GATGCTTGCTTACGGCGGGACTGTGAAGCTGTGTCGCAATCCAATGGCATTGGACAAAGTGGTGGTCTTGTCGAGTCTAC TCCAGAGACAGACAAGAGAAATGCGCCTACAGAAAGCCAAACCAGTCCAGGTGAGGCTATCAATGACACTGAATATCAGA ATACTAGGCCTGGCTGTCCAATACGGAGAGGAAGTTTGAACAAAAGTGGCAATGTTTCCAAGATCTCGAGGGTAGAAAAT TTGTCAACCCTAAAAGTTTCTCCTGATGATGTTGTTGGACTAATCGGTCAAAAACATTTCTGGAAAGCCCGAAGAGCAAT TGTCAATCAACAGAGAGTGTTTGCAGTCCAAGTGTTTGAATTGCATAGACTGATAAAGGTCCAACAGCTGATTGCTGGAT CACCAGATCTTATGCTTGTAGATGGTGCTTTTCTCAGAAAGTCTCCTCCAAAGGGATCTACTCCCAAGAAACTCTCATTG GAATATGTGGTTAAACCTCTGCAAGAAAACCTTAAGCGCAATGATTCTGAAAAGCAAAATCATAAAATGGAATGTTCTGC AGAAAATGCAGTTGGTAAAACATCTATTTCATCGGTGAAAAATGGTAGCCACCTTTCACACCACACCCCTTTTCCCGGGA ATCCACCCCAGCCTAATGTGCCTGCCGACAGTGGGATGAGTCCTTGGGGTTTCCATCAGTCACCTGGGCACCAATGGTTA ATTCCTGTGATGTCTCCTTCCGAAGGGCTCATCTACAAGCCATATCCTGGGCCTGGATATACAGGAACAAATGGTGGAGG ATGTGGGCCTTTTGGGCCTGCTCCTTTGGGTGGTACTTTCATGAATGCTGCCTATGGAATCCCAAATTCTTACCAAGGGA TCGGGGTTCCACCAGACGCTCCTCCGGGCAGCCATGCTTATTTCCCTCCCTATGGCATGCCGACTATGAATGCAGCAATG TCAGAGTCAGCTGTTGATCAGGTGAACCAGTTTTCTGCCCTAGAATCTCGGGGGCAAAGTGGCCATATTTCTGGCAGGGA AGCTGATCATAACACACACAATCAGAGTTCATGTGATGTACCAGTGCAGGGAAATGGAGCAACATCACATGTCATGTATC AGCAGACGTACAAGGAGTTTGAGTTACAGGGGAGTAGGACAAGTAGCCCTAGTGAAATGGGGCAAGTTGCTGAAGGAAGA GATGCGCTTCCTCTTTTCCCTACAGTTCCAGTAGAACCAGAGGGAGCCCCTCAGTCTCTTGAAACTGGACAACAAATTCG AGTTATCAAAGTGGTGCCTCACAACCGAAGATCTGCAACTGCATCAGCAGCTAGAATATTTCAATCGATCCAAGAAGAGA GAAAACAGTATGACTAA
Protein sequence (LotjaGi1g1v0365400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRGKDDEKVMGPLFPRLHVSDTEKGGPRAPPRNKMALYEQFSIPSQRFNQGLLPPTNTNTSSNTAPPASSSQGAVHERN YVFPVQSPSQTPIRRAEKPVSHQSEGANLNSSLVQLEQRKKVDEDDFTVPIYIRSRTGQSSDRSLDGKRLRYFGCSVAEQ NDCERDLKQYAPSLVNKRRDVRSETDGLPPVSPNKEQPLIRARNTSTGENIDTFKRQAKVTPNQEFQDCTLSKPTRLQRD DACLRRDCEAVSQSNGIGQSGGLVESTPETDKRNAPTESQTSPGEAINDTEYQNTRPGCPIRRGSLNKSGNVSKISRVEN LSTLKVSPDDVVGLIGQKHFWKARRAIVNQQRVFAVQVFELHRLIKVQQLIAGSPDLMLVDGAFLRKSPPKGSTPKKLSL EYVVKPLQENLKRNDSEKQNHKMECSAENAVGKTSISSVKNGSHLSHHTPFPGNPPQPNVPADSGMSPWGFHQSPGHQWL IPVMSPSEGLIYKPYPGPGYTGTNGGGCGPFGPAPLGGTFMNAAYGIPNSYQGIGVPPDAPPGSHAYFPPYGMPTMNAAM SESAVDQVNQFSALESRGQSGHISGREADHNTHNQSSCDVPVQGNGATSHVMYQQTYKEFELQGSRTSSPSEMGQVAEGR DALPLFPTVPVEPEGAPQSLETGQQIRVIKVVPHNRRSATASAARIFQSIQEERKQYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 698 | 698 | 3.1E-273 | ||
| MobiDBLite | 1 | 76 | 76 | - | – | |
| PANTHER | 1 | 698 | 698 | 3.1E-273 | – | |
| MobiDBLite | 40 | 76 | 37 | - | – | |
| MobiDBLite | 179 | 209 | 31 | - | – | |
| MobiDBLite | 253 | 308 | 56 | - | – | |
| MobiDBLite | 253 | 267 | 15 | - | – | |
| MobiDBLite | 273 | 295 | 23 | - | – | |
| MobiDBLite | 438 | 465 | 28 | - | – | |
| MobiDBLite | 576 | 596 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of photoperiodism, flowering | Any process that modulates the frequency, rate or extent of photoperiodism, flowering. |
Expression pattern of LotjaGi1g1v0365400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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