Transcript — View — Lotus Base

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LotjaGi1g1v0368200.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0368200
Transcript ID	LotjaGi1g1v0368200.1
Related isoforms 1	LotjaGi1g1v0368200.2
Lotus japonicus genome version	Gifu v1.2
Description	Cytokinin riboside 5'-monophosphate phosphoribohydrolase; TAIR: AT5G11950.1 Putative lysine decarboxylase family protein; Swiss-Prot: sp\|Q84MC2\|LOG8_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8; TrEMBL-Plants: tr\|A0A0S3RBJ3\|A0A0S3RBJ3_PHAAN Cytokinin riboside 5'-monophosphate phosphoribohydrolase; Found in the gene: LotjaGi1g1v0368200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:84641150..84644158) extracted from Lotus japonicus Gifu genome v1.2.

CTCATGATAGCTTATCTAGAGAGAGAGAAGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGTTAAGGCCGACAAAAAGACG TAGGATTGGAAAGGCAATAGAACATGTGGGGTGGCCGTGCTCTGCAAAACCAAATATGAGAAGACCCTGACTCATTGATT TCTCCTGTGTGCTCTATTCTCCATTTTAGCATCAACCACCATTACCCTTTCAACAAAGTTTCTTCCTTTTCTTCAATCAT AGCAATTTCAACCAAACCCAACATTCAATCAATCCTCTTCCAATTGAAAAAACCACGAACAAAGCTTCGATTTTGAATGA TGGATGGCCACCCCAGAAGCAAGTTCAAGAGGCTCTGTGTCTTCTGTGGAAGCAACTCTGGCAACCGAGATGTCTTCAGT GATGCTGCTATTCAATTGGGCAATGAACTGGTTAGTGTAAAAATGGTTTTTTTATGGTTTCAGAGCATGCCCTCTTGTTG CTTTACACTCGTTTGATATAAGTTCTGTGTAGCAGGTTGTTTTCCAATACTGCATTTCATTTTGAATCTGTTTGGTTTCT TAAAGTTTGGTTTTTTATTGATACACAGTGAAAAAAAACTGAAGGGTACATCAACATCTTTATGTGTTTTACATTTTTAT CTTATGGCATGAATTACAGGTTAAGAGGAATATAGACTTGGTGTATGGTGGGGGAAGTGTTGGTCTTATGGGCTTAATAT CCCAAAGAGTGTATGATGGAGGCTGCCATGTCCTAGGGTATGTATATCAGCCTATGCCATAAAAATCCTTCCTTTTTAGT GTTACTGATAATTGATGACATTGTCTCACCATTTGTTTTTTTCATCTTCACAATTTTTCTTTCTTTTATGTACAGGATCA TTCCAAAAGCTCTCATGCCTCTGGAGGTATTTGTGCTACTATTACTATCTGTTGTCCTATAAAAATCTGTGTCACTTTGT TTGTTTTTCTCTCCATATACAATTAATTTGGTTGGATTTCAGTTGGTCACATTTCCCTCTTTCCAATGCAAAAAAAGCCA ATGGAACGAAATGGATGAAATGAGGGAATGTGCTTTTACTTTTTTGCAACTTTTAAGCAAACACACACTTGATCATTGGC AATGGACTGATTAATATTTTCTATTAGTTTATTCTTGGGATTTGTATTGTGATGATTTGATTACCAAAATTAAGAAGGAG GGAGTAGGTTTTCTTCTTGTATACCAAGTTTTACTTTCATTATCTTCAATCTGCTTCCACCAATGCATTGGCATTTCACT TCTTACTTCATAGCAGGACTGATTTGTGGTGAGAGTTGATGGATCCTTATGATAATTATTCCAATGAATTAGCATGTGTT GTTGGTTAATTTTGACAGATATCTGGTGAAACAGTTGGTGAGGTGAGAATCGTTTCAGATATGCATGAGCGTAAAGCTGC AATGGCTCAAGAAGCTGATGCCTTTGTTGCTCTCCCTGGTATATACCTGAAGAACTTTCAAACAATTTTAAATAATAATT GATGATTACATGTCTTATACATGTAAATATGCCATTAGCATTGTTCTTAGATATGCTAAAGTTTGATTTTACTTTTGATG TTAAGGATTGCTATACTGATCCTGTAATTATGAGTTTCTCTGTTCTTATACATTCCCTTTTTCCTTACAATTAGGAGGAT ATGGAACCATGGAAGAGCTATTGGAGATGATAACTTGGGCGCAACTTGGAATTCATAAGAAACCGGTAACATAGTCATTT TACTGCATAGTACAGAATCTTTGGTATAATAATCCAATGTTAACTCAATATCTTCCTGCACAGGTTGGTCTATTGAATGT TGATGGTTACTATAACTCTTTACTTGCATTGTTTGACAATGGTGTTCAAGAAGGATTCATTAAGCCTGGTGCACGGAATA TAGTTGTATCTGCTCCTTCTGCCAAAGAACTTATGATGAAGATGGAGGTGTGTTTTCATATTTGTGATTTTTTTTTTCAA AGATTAATGGTAGATTGGTTTACTAGGATTACTAGGAAAAATAAATTGAACTTCTATGTTTATTGGTGTATCATTATTGG ATGTACTAATGATGTATACAGTTAATTGGTCAGTTAAAGGATTGTCATTATAATAAAGCATGTGCATTTGAATTTTCTTT GCATAGCTTCTTACTTGGACTAGTAAGAATAGATTGCAGATAGTGTTTTCTTCTGTGTATTCTCTCCCCCATTTATTGTG TGATAATTGTCAATTAGGACTTGGCTTCTTTTCCCCTTAAACACTTTGTAATGAAATTGTTGTCAATTAGAATTTTACTA CTTTTTGTGGAACTAAGGTTTATTGGATATATGTGAATTTTCAAATTCTAAAAATTGGCTTACATATTAATGAATTCAAA GGACCATGCTTTCTCTTTTCTCTGTCTTTGTCTCAGTCTCTGTCTGTTTGTCTTGTTTCTTTTGGGAATAAAAGAATTGT TCAAATTACTGTGTTAAACTCTAAATGGTAAATGCTGACTTCTTCTTTTTGCAGCATTACACTCCTTCGCATGAAAATGT TGCCCCTAGTGAGAGCTGGCAGATGAAGCAATTAGGTGATTATGCAGGACAAGAAAATGCAGAGTGAAGTGAAGCTTATA TTGATGGAAAATTTTTTTCTTCTTTTTTTCTGATGTGATTCTTCATCAATTTGAGATGTATACAACAAGAGCCAGCATAG ATGGGGCCATATGTTGTTTGCTACCGTGTACTGCGTTGGTTTTATGACTATAATATGTGCTTTGCTGCTTTGCATTTAAT GGTCAATTGAACCACTGTGAGATAGTCATATCTGATTGTTACTACTCATTAAAGGCAAAGGAATGGATAGAGACGATAAA CAGAATATCAGTTGTGTTGGCTCCACTTTGTAGTGGCTTAATTAGACATGATAGGTGGATTGAGGACATCCTAGACTTTT GGTGAACCTTATTATGAAGCTTACAAATTGAAGACTTTATGAAGCTTAC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0368200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGATGGCCACCCCAGAAGCAAGTTCAAGAGGCTCTGTGTCTTCTGTGGAAGCAACTCTGGCAACCGAGATGTCTT CAGTGATGCTGCTATTCAATTGGGCAATGAACTGGTTAAGAGGAATATAGACTTGGTGTATGGTGGGGGAAGTGTTGGTC TTATGGGCTTAATATCCCAAAGAGTGTATGATGGAGGCTGCCATGTCCTAGGGATCATTCCAAAAGCTCTCATGCCTCTG GAGATATCTGGTGAAACAGTTGGTGAGGTGAGAATCGTTTCAGATATGCATGAGCGTAAAGCTGCAATGGCTCAAGAAGC TGATGCCTTTGTTGCTCTCCCTGGAGGATATGGAACCATGGAAGAGCTATTGGAGATGATAACTTGGGCGCAACTTGGAA TTCATAAGAAACCGGTTGGTCTATTGAATGTTGATGGTTACTATAACTCTTTACTTGCATTGTTTGACAATGGTGTTCAA GAAGGATTCATTAAGCCTGGTGCACGGAATATAGTTGTATCTGCTCCTTCTGCCAAAGAACTTATGATGAAGATGGAGCA TTACACTCCTTCGCATGAAAATGTTGCCCCTAGTGAGAGCTGGCAGATGAAGCAATTAGGTGATTATGCAGGACAAGAAA ATGCAGAGTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0368200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMDGHPRSKFKRLCVFCGSNSGNRDVFSDAAIQLGNELVKRNIDLVYGGGSVGLMGLISQRVYDGGCHVLGIIPKALMPL EISGETVGEVRIVSDMHERKAAMAQEADAFVALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNSLLALFDNGVQ EGFIKPGARNIVVSAPSAKELMMKMEHYTPSHENVAPSESWQMKQLGDYAGQENAE

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.450 View details on G3DSA:3.40.50.450 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.450	3	189	187	1.7E-84	–
PANTHER	PTHR31223 View details on PTHR31223 Search for proteins/transripts with this domain View external data on PTHR31223	5	213	209	1.9E-128	–
PANTHER	PTHR31223:SF4 View details on PTHR31223:SF4 Search for proteins/transripts with this domain View external data on PTHR31223:SF4	5	213	209	1.9E-128	–
SUPERFAMILY	SSF102405 View details on SSF102405 Search for proteins/transripts with this domain View external data on SSF102405	9	188	180	3.82E-59	–
TIGRFAM	TIGR00730 View details on TIGR00730 Search for proteins/transripts with this domain View external data on TIGR00730	12	188	177	9.6E-57	IPR005269 Show description in modal box View details on IPR005269 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03641 View details on PF03641 Search for proteins/transripts with this domain View external data on PF03641	55	185	131	4.0E-44	IPR031100 Show description in modal box View details on IPR031100 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	193	207	15	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	193	216	24	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0368200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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