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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0368600 |
| Transcript ID | LotjaGi1g1v0368600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT1G21320.1 nucleic acid/nucleotide binding protein; Swiss-Prot: sp|Q8H0P8|RBP1_MEDTR RNA-binding protein 1; TrEMBL-Plants: tr|I3T8X8|I3T8X8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0368600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84702545..84706185) extracted from Lotus japonicus Gifu genome v1.2.
CGACCTTACTTCGCGGGAAAGACATTTGCGGTGAACACATGCAACCGTTTTTCGAACAAGTAATAATAATATATTTTGAA AAGAAAAAAAAACTCTTCTGTCTTAACCCGAAACAAATCAGTGCAGGTTGATATCACAGTTAACGCACTTGAGAACCGGA GAGAGAGAAGCAGCCTTGGATGGCGGAACCCTACGACCCATACGCTCCTTCCACCGCCGCTCCCGCTGACGGAGGTACCT CCTTCTTCTCTTCCTACCTTTACATTTCAAACCAAACCTTCAATTTCATTTGCAATTGCTACTCCCAACACACAGTTTTT CTTCACACGTTCTTGATTACTCTCCTCGGAGGAATAATTCACACAAAATACAGATTCAGTTCACATTTTGGTAAATTAAT TGCAAGATTAAACGAGTTAATTGCTGTATAGAGGGTTTAAACCTAGAGAAGAATAGTGAGAATCTAATAGCAGAGTAGTA ATTAGCATTCTGTTAATCTGTTATGTTCATTCTCTTACAAAATGATCACAACATTCATGTTTTGATATGTTGCTTTGATT GTTTATGTCAGCAAGCATTGCGAGGAGTAGCTTTGCTGGTTACATTCCATCTGAGCCAGCATCCTTGGCTTCGCCTTATC CTCGTTTCTCGAATTCGGCTGAATTGCGCGGAATCGGAGCAGATTACCTACAGAATGATGTAAAGAAACAAGAAAATCTG ATGACAATCTATTGAGTTAGCTAACATGGTGTTGTAATGAATGTGGGAGATGATGGCCTTTTTCACTTTTTACTGCAGAT AAACTTGTCGAGGGTGGGGCCGTATAGTAGTGTTGATGATGCTGTTAGCTCCAGAGTTCTTTCTGAACCTAACATCAAGG GTTATTCGCCTCTTGACGATCCTGTTCTGAGGACGAAACGGGATACTTCATTGGGCGTTAATCCTGATGTGAGCAGTGAA AGGCCAATCCCTAAAGCCAATCGCGAAGGTCTTGCGGATTCAAACGTTCTATTTGTGGATGGTCTTCCGAGAGACTGCAC TAGAAGGGAAGTTGGCCGTATCCTTTGCTACCTATGTGTCTGCTTGTATGCATTGGCACATCTGTTTTTTAGACAATGGA CAGGAAGATAGTTTTTCCTAATCAAAATTTTGTGAGATACTCAGATTTAATATATACGGATCCTTTTTAGCTATCATTCG TTAGGAAGTTATGGTAAAACTTCATGTGGGAAATAACTTGCCTTTTTAACCATTTTTGGAAAAGATATTACATGGTGCCT GAAACAACATTTATCAAATTTCATTGTTCTGTTGATGTGAAGCCTTGACCTATCCTCGTAGATCTTTTCCGTCCCTTTAT TGGCTATAAGGATATCAGAGTTGTTCACAAAGAGCCTAGACGTGTAAGTCTGTTTTTAAGCAATTATGTACTTTGTGTTG ATTACTTTAGAGTTTAGACTTTATTAGATTTCAGTAATGTACAATCCATCTAATATTGTTATAGCTTTGTTCAGGAAATG GAAAAGAAAGGATATATATGAATCACTATGTGTTTTTAAGCAAAAAGCGATTGCCCTACCCTTGTTCTGATGTTCCTATA GGAATACCTTCGTTATGATTACTAAATATGTTTAGGATATAATGTTAATATACAATTTTTCTTGCTGGATTTATTTTTAA ATCTTTAGTAGTTTTTAATGAGCAATCATGCTGCAGAGTGGAGACAAGGCTATGGTTTTGTGTTTTGTAGAGTTTGATGA CTCCAAATGTGCTCTCACTGCCATGGAAGCTCTACAAGGTAATTTTTTTTTGAATACATAACTGAGTTTGATGTCCCCCC ACATGGTCCTGAGGAAAGTATAAATATTACTCTGACATTGTAGGGCCTAGGCTGAAATTTAGGAAAAGAGAGAAGACCTC GAAATAATATGTCATCTGATTATATTATAGATTGGTATCAAAATACAGAGCACTTATGTATACTAATACTGTAACTTGCT AGAATTAGTGCGATACAATTATGCAACTATTACTAGCCTAATTTGATAGTCGATAAGCTAGTACCAACTTAACAAGAAGT AAATAATAATAATATTCTAACTATTTAACATTTTGGATGTTGTCGATACTTTGTGATGTCATTGACTTATTCGATAGAGT AACTAAGAGTGTAATGTTAACGACTAAGAATTCACCAGAAACACCTTATGCATACATATATCCATATCATATCGCTTTGT ATGTAAGAGAGTCACTTTAGAGGCGGCAAATCCTAACATGGGATATACAATGTTTGCGTGAGAAACTATGCTACACACAC TGAGGCTTTGCTTGTAATTTTGCCAATTTGAAAATTGAAATTAAATTTAAAGAGGCTTAATTATATTATAAAAGTGTTGA AAATACCTAATACGCTCTAGTGTTAAATTTTATGCAGGCTACAAGTTTGATGATAAAAAACCAGATTCACGGACCTTAAA AATCCAGTTTGCGCACTTTCCTTTCCGCCCGCCAGCTGATAACGGGACAACTACAACTTAACAGTGTGACACACTTAGCT GGAACTGCACTTCTGGGGTGAGAATTTGTTTGATGCTGCTCAAATGAACTCCATCCGGTGTGAAGTTTGCTTTAAGATCC AAAATTTTAGAGAGCTTGGCTTGGCTTGTTGAGTATAGAAATATATGGACTCATAAATTGATTTCTGGCAACAAACCAAA GTTTTAATCTAGAACCTAGTTGTAATTTTCATGACCTCAGGCTGACTGGCTGTGTACATTTGAGTTTTGACCCGCTGTAG AACGGTGGGTGTTGTGTAAAGATAATAGGCATTAGTTCTATGTTTTCTGGTATCGTTTTGTTCGTTACATCATAAATCCT GATCCGTTTCTCTGATTTTTTTTTCTTCTTCTTTTGGTAGAGCTATGAGCATAACATTGGACCCGGCTTGTAATGATTTT TTTGGCTCAAGGCCCAACTTAGAATGTTTGGTTGGAGGAGAACGGAGGGGAGGGGAGGGGAGGGATTTTTAAAATCTAAT CTTGTTTGGTTCAAACTTTAGGAGGGGAGGGGAGGGAAATGGAGGGGAGCAAAATCCCTCCAACCTCAATTTTTTGTTCC CCCCAAAAGTGGGGGAATTAGGAGGGGAAATAAATTTCAGACAGAAATAACCTTGCACAAATCTAAAAATTACAATTTTT TATCCGCCGCTGTCGCCCCCCTCTCCGGTCTCTCTCTGCCGCTGCCGCTGCCGCCGCCTCCTTCTCGGCGATGCTGGCCC CCTGCATCCGCAACACAGCCGCAACCCCTTCTTCATCACCGATTGAATCAATCAGACCCTTCTTCTAAACAATCTTTGCT TCATAGGATTGTCGAAAAGCACACGTAGTAGTTTTTCTGTGTTCTTCTTGTTGCGTCATGTTTAGAATTCCAGGCTTTGT TAAATCTGCAAAATGTTATAAACCAGGTCCCAGAGCTTGATTGGCGAATTGGTTAATAGCTTTAAACGAAAATTGAACTG GCTTGAGCATGCCTATCATGGCATCGCTGTTCGGCGAATTGGTTAATAGCTTCGGAAATAACGTTGTTGACCCTTACGTT GTCAACCAAGTTTACTTATCAATTTAATGAGCTTACCGGTG
CDS sequence (LotjaGi1g1v0368600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAACCCTACGACCCATACGCTCCTTCCACCGCCGCTCCCGCTGACGGAGCAAGCATTGCGAGGAGTAGCTTTGC TGGTTACATTCCATCTGAGCCAGCATCCTTGGCTTCGCCTTATCCTCGTTTCTCGAATTCGGCTGAATTGCGCGGAATCG GAGCAGATTACCTACAGAATGATATAAACTTGTCGAGGGTGGGGCCGTATAGTAGTGTTGATGATGCTGTTAGCTCCAGA GTTCTTTCTGAACCTAACATCAAGGGTTATTCGCCTCTTGACGATCCTGTTCTGAGGACGAAACGGGATACTTCATTGGG CGTTAATCCTGATGTGAGCAGTGAAAGGCCAATCCCTAAAGCCAATCGCGAAGGTCTTGCGGATTCAAACGTTCTATTTG TGGATGGTCTTCCGAGAGACTGCACTAGAAGGGAAGTTGGCCATCTTTTCCGTCCCTTTATTGGCTATAAGGATATCAGA GTTGTTCACAAAGAGCCTAGACGTAGTGGAGACAAGGCTATGGTTTTGTGTTTTGTAGAGTTTGATGACTCCAAATGTGC TCTCACTGCCATGGAAGCTCTACAAGGCTACAAGTTTGATGATAAAAAACCAGATTCACGGACCTTAAAAATCCAGTTTG CGCACTTTCCTTTCCGCCCGCCAGCTGATAACGGGACAACTACAACTTAA
Protein sequence (LotjaGi1g1v0368600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEPYDPYAPSTAAPADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRVGPYSSVDDAVSSR VLSEPNIKGYSPLDDPVLRTKRDTSLGVNPDVSSERPIPKANREGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIR VVHKEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRTLKIQFAHFPFRPPADNGTTTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 224 | 219 | 1.1E-82 | – | |
| PANTHER | 6 | 224 | 219 | 1.1E-82 | – | |
| MobiDBLite | 92 | 121 | 30 | - | – | |
| SUPERFAMILY | 124 | 214 | 91 | 7.79E-15 | ||
| Gene3D | 125 | 218 | 94 | 1.8E-18 | ||
| CDD | 130 | 212 | 83 | 8.95405E-33 | – | |
| ProSiteProfiles | 130 | 216 | 87 | 12.748 | ||
| SMART | 131 | 207 | 77 | 2.0E-8 | ||
| Pfam | 132 | 203 | 72 | 1.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0368600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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