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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0370800 |
| Transcript ID | LotjaGi1g1v0370800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein DnaJ; TAIR: AT5G21430.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q84VQ4|NDHU_ARATH NAD(P)H-quinone oxidoreductase subunit U, chloroplastic; TrEMBL-Plants: tr|I3S5E9|I3S5E9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0370800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84922872..84924886) extracted from Lotus japonicus Gifu genome v1.2.
GAATACTTACCACTATACTACAACGACCTTGTTGTTGAAGAAGGATGAATTTAATATTTTATATATTATCATATATTTCA TATAACAAAAACCACCAGCAGATAACTTTTTTATGGCAATGAGCCATTCCCTTATCTAAACCATGTAATGTTTTATTCCA TTGAATAATTAATAAAATATTTGAAAAGTAGAGCTAAAGCATAGGACATGACACATTAGAAAGCTTAGGTGAGTCAATGG CTGTATCTTCCACCACCACCACCACAATATGCATTTCAGGTAACAACATTGTTCCAGTCTATCAATCACCAAAACTTGGA TTCTTATCTACCAACTGTTTTCATGTGAAACCACGGAGATTGTGCATTAGAAGCTCGAGTGATGTCTCTGCTGAGACCAC TGACACTGAGGTGGAATCAATTGAAGTCCCAAAAGAACCTCCATCTTTGATTTCTGCTCTCAACGTGGAAAGGGCTCTCC GTGGCTTACGTAAGTTTTTCAACTTTGTGCATGTTTGGATACACGCTAAAGATCATAAAGGGGTAAAAATCATGGTGTAT AGTAACAAAAGTTGAGGAAAATTGCTTTTGTTCATGTTCACATGATTTTAGCTTCAATGTGGTTTTTCACCATGTATCCA ACTACATCTATGTTATGCTAGCTCTCTCTGCCACACAACAGAATCCTTATCCTCTTACCCTTTTACTTATGTCTTGTTAT TTACATTATATGCATAAAAGTGCATTTAATTGATGAATATATGGTTTAGAATGCAGCAATTACAGATGCAGATCATTATG GTAGACTCGGCATTCCAAGAGGATATCCCTCTAACAAGGTCATCACTTTTGATTTTTTCTAATCTTTTCATCCCAACTTC TAACTGACTTTCCACAATTGATTCTAAAGTCATAATTAATTATGAGAGAAGTCTCAGTTAGTAGCTTTCGGTTGTCTGAA TTGATTCTAACGAAATAGAAACTAGTAAAAGCATGTGATTCATCCCGCTACACTTTAACAGGTGGCGGTTGCATACAACA ACAAGGTGCGAGAATTGGAGAGTCAAGGTTTAGAGGAAGAGGAACTCAAGAAGCAATTGGAACTTCTCAGAGTCAGTAAA TTTCTACATTTGAATGCTTTGTGTTTTGCATTATTATAGGTTTGAGCGAGATCAGATCATTGATGATTTGATTTACTTTG TGTAGGAATCATACACCATCATGTCATCAGTAGAAGAAAGAAGATTATATGATTGGAGCTTGGCCAGAACAGAGAATACA GGGAGATACAATTGGCCATATGAGGCTGACATAACACCACTTACAACGGAAGAGTCTCCACCAGAGGTATTTCTTGTTCC TGTTTCTAATGTGTATATTAGATGAGTATTGGGAGAATTCTGTATTTCTATCCATCATTACTCAATATTAAAAAGTTACT GGGAAGAAGAGGTAGTGATCAGTTTATCACTCACTGCCCCTATGATTTCGGGAAAAAACTTTCCTTCTCAACATATATAT AACATGGGGTTGTCTAAATGACCCATGAAAAAGTTTGGATTAAATAACTCATCATCCAATCATATTGGAGATAAATGAGT TGAAAATAAATTAATAAATAAAATATATAAATTCCAACTCATTTATCTCAAATGTGATTGGATAATGAGTTATTTAACCC CAACTTATCATGGGTCATTTAGACATCCCCATATAACATTGCTCATAATCAAATAAGTTTATGTATTGTCCTTTATTAGA TGCTGCTAAATTAACAACTTATCATTCTTTATTGAACATAATTCTTTTCTCATGGCAGGATCCTGAAGATGTCGGACCAA CTAGAGTGGTTGGATTCGTCTTTCTGGGATGGATAGTGATCTCAGTTGTGTTATCTATTTCACTAAACTTATAGACAGAA GTATGATGTATGTATGAATTTTTTCCCCTGTAAACAATATTGTAATGCATGTTATTTTGGATGAAATGAAATTGCATTTT GGCTGTTTCTATTTA
CDS sequence (LotjaGi1g1v0370800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTATCTTCCACCACCACCACCACAATATGCATTTCAGGTAACAACATTGTTCCAGTCTATCAATCACCAAAACT TGGATTCTTATCTACCAACTGTTTTCATGTGAAACCACGGAGATTGTGCATTAGAAGCTCGAGTGATGTCTCTGCTGAGA CCACTGACACTGAGGTGGAATCAATTGAAGTCCCAAAAGAACCTCCATCTTTGATTTCTGCTCTCAACGTGGAAAGGGCT CTCCGTGGCTTACCAATTACAGATGCAGATCATTATGGTAGACTCGGCATTCCAAGAGGATATCCCTCTAACAAGGTGGC GGTTGCATACAACAACAAGGTGCGAGAATTGGAGAGTCAAGGTTTAGAGGAAGAGGAACTCAAGAAGCAATTGGAACTTC TCAGAGAATCATACACCATCATGTCATCAGTAGAAGAAAGAAGATTATATGATTGGAGCTTGGCCAGAACAGAGAATACA GGGAGATACAATTGGCCATATGAGGCTGACATAACACCACTTACAACGGAAGAGTCTCCACCAGAGGATCCTGAAGATGT CGGACCAACTAGAGTGGTTGGATTCGTCTTTCTGGGATGGATAGTGATCTCAGTTGTGTTATCTATTTCACTAAACTTAT AG
Protein sequence (LotjaGi1g1v0370800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVSSTTTTTICISGNNIVPVYQSPKLGFLSTNCFHVKPRRLCIRSSSDVSAETTDTEVESIEVPKEPPSLISALNVERA LRGLPITDADHYGRLGIPRGYPSNKVAVAYNNKVRELESQGLEEEELKKQLELLRESYTIMSSVEERRLYDWSLARTENT GRYNWPYEADITPLTTEESPPEDPEDVGPTRVVGFVFLGWIVISVVLSISLNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 191 | 191 | - | – | |
| PANTHER | 1 | 212 | 212 | 9.4E-84 | – | |
| SUPERFAMILY | 89 | 156 | 68 | 7.03E-7 | ||
| Coils | 114 | 137 | 24 | - | – | |
| TMHMM | 192 | 211 | 20 | - | – | |
| Phobius | 192 | 211 | 20 | - | – | |
| Phobius | 212 | 213 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0370800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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