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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0371700 |
| Transcript ID | LotjaGi1g1v0371700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endoglucanase; TAIR: AT3G43860.1 glycosyl hydrolase 9A4; Swiss-Prot: sp|Q8VYG3|GUN16_ARATH Endoglucanase 16; TrEMBL-Plants: tr|G7J933|G7J933_MEDTR Glycosyl hydrolase family 9 protein; Found in the gene: LotjaGi1g1v0371700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84979360..84982307) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTAAGCCCTCTTTCCCTCACAACCATCCCTATATTCTTCCACCTTCTGAACCCAACCCCCTCTCTTTTTCCCGCCAT CATCAACACAAAACAAGAAAACCAAATACCGAAATCAAAGCATTTGTTACTACTTCTTGGTTCCTTGTAAAGACAATAAA AACAACCTCTAACCATCAACATAACCATAATTCTTTGCATTTTCTGTATAAAATCTCCAATTCTTAGCTACCTCTTACAA ACTCAAACATCGATCAATATCTCAATCCCCCCTCTTTTAATTTACACAATTGCTTTTGGTTTTTCATGGATACTAAAAAA GTATATTGGGCCATCATTGTAGCATGGCTTACTTTGTTTGAAGGAAACATGATGCTTGTTAATGGTGATTTAAATTATAA GGAGGCTCTTACCAAATCCCTTATCTACCTTGAGGCACAAAGATCAGGGAAACTCCCTTCCAATAACAGGGTTCCTTGGA GAGGAGATTCAGCACTTGATGATGGAAAACTCGCCAATGTGAGCAAAAAAATAATATTTTCTTTAAACAAAATTGCAATG AAATGAACAACTGGGGCTCATGTATGATATTTATTTATATATATATATGTAGGTGGACCTCGTTGGAGGATACTATGATG CAGGGGATAATGTCAAGTATGGGCTTCCCATGGCTTTTACTGTCACCACCCTTGCATGGGGTGCCATTTTTTACAAGTCA GAATTTGAAGCTGCAAATGAATTGGGAAATGTCCGCGATGCCATTAAATGGGGTACGGATTATTTTCTGAAATGTGCTTC TCGAAAGAAAAGATTATACGTGCAGGTAAGTGAGTTTGAGTAAATAACTTAATTAAGCGTTTATAACAATAAATGCTTAT GATATAAGCTAATTTGAAAAAATATTGAAATCATGTTGTATATATAGGTAGGGGACCCTGTAGAGGATCACAATTGTTGG GCACCACCAGAAATTATGAAGACAAAGAGAACAGTATTGCAGATTGATAGTGAGACTCCCGGCACTGAGATTGCAGCTGA AACTTCTGCGGCAATGGCGGCTTCTTCCATTGTTTTTAGGTCTGTCGATCGTATATATGCTCGCCGTCTCCTCAACAAAG CTAAACTGGTACCTTTTACTTTCATCAAACATCTTGTGTACATTCGTTCATGGAAATCATGTGATAGCTTACTTAATTTT CTCCCATTTGATGGCATGAAGCTTTTCCACCTGGCAAAATCGCATAAAGGAACCTATGATGGAGAGTGTCCCTTTTACTG CTCCTATTCCGGTTACAATGTAATTACAGCTCTTGTCACTTTCTTTACCTCTCAAATGTACTTAGTTTTGGAACAATTGA TTCTAAAGTTAAAATTAATTTTGGAGAAAAGCTTTTGAGTGTTCGAATTGATTCTTACGAGAGTGAATGTCGTTGGGATT TAACGGTGTTAATTTAATCTGTGGGGTGCAGGATGAACTGATGTGGGCAGCAACATGGTTATACTATGCTACAAGGAAGC CTATGTACATGAAGTATATACAAGAAGAATCCATAAGTGCTAGTGTTGCAGAATTCAGTTGGGACCTTAAATATGCAGGA GCTCAAATCCTTCTTACTAAGGTAATTAATCTTCCATCATTATTACTCTTCCTAGCTACATCATATAAAGGAAAAACCTA GTGCGGTAAAGTTCCTACTATGCGTGAGGTCCAATGAGGGTCCGGATCCACTTTGAGGATCTAGTGTGAGCAGTCTTACC TTGCTTTTTTGCAAGAGGCTAATTCCATGGCTCAAAACTGTGACCGCAAAATCACATGATAGGAACCTTGCCATTGCTCC AAGACTCTAGCTACTTCATATATGCAATATTGTTCCTTCTTTTTTAATTTTGGCTCCTTAGCTAAACCTATATATATATA TATGTGTTTGGCAGTTATATTTTGAAGGTCAAAAGGATTTGGAAACCTTCAAAAACCATGGTGAAAGTTTCATATGTTCA GTGCTTCCTGAGAGTCCCTACTATGGAATTAAATTGTCTCCTGGTAAATGCTCTCTTTTAATTTCCTCTTTGTGTGTTGT CATCTTTATAAGGTGAAGTAGTAATTAATCTGTTACATGCATATGTTTTTAAATTTGCAGGTGGCTTCATTCATTTGAGA GATGGAGCCAACACACAATACGCCACCGGCACAGCTTTCTTGTTAACTGTTTATGGTGATTTGCTTGCCAACCACAATCA GAAAGTCACTTGTGGAGGCAAACAGTTTAGCTCGTCCCATCTCCTCAATTTTGCAAAGAAACAGGTTACTCACGAACATG TTTATAATATGCTCTTTATGTGTTAAAATTAATTTGCAAAGAAACTCTTTTAACTTATGAACTTGGTGATTGATGTTGTC GTTAAATTGTGACAGATGGATTACATACTAGGGAAGAACCCTGAAGGGAGATCGTACATGGTTGGATTTGGGAAGAACCC ACCAACGCAAGCTCACCATAGAGGTGCATCGGTGCCAAAGTTGTCGGAGAACGATGAGTTCAGTTGTCCGATGAGCTTTG CGAAGTGGTTTTCAAAAGATGCACCGAACCCGCATGAGCTCACCGGAGCCATTGTGGGTGGACCTGACATCTCCGATAAG TTCAATGATAAGAGATGGGATTCCCCCAACACTGAGTCCTGCACGTATGTCAATTCTCTTGCAGCTGGAGCTCTAGCAAA GCTTGCAGCTATGAGTTGATAATTTTCATGCTAACTCCAATCCAATTAATGTTTCAAAATTAGTAAACATAGATTACATG TGTGTATGGATCAATATGTAAAACTCTTCCGTGTTTAGCAAGATGGTGTGTTTATTTAGCACATATGATGTGGTTAATTA GGTTGTAACTTACTGTCACACTGATGAGCAAATAATAACAGATGGATCATGATCCTAGCGTTTTCCCA
CDS sequence (LotjaGi1g1v0371700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACTAAAAAAGTATATTGGGCCATCATTGTAGCATGGCTTACTTTGTTTGAAGGAAACATGATGCTTGTTAATGG TGATTTAAATTATAAGGAGGCTCTTACCAAATCCCTTATCTACCTTGAGGCACAAAGATCAGGGAAACTCCCTTCCAATA ACAGGGTTCCTTGGAGAGGAGATTCAGCACTTGATGATGGAAAACTCGCCAATGTGGACCTCGTTGGAGGATACTATGAT GCAGGGGATAATGTCAAGTATGGGCTTCCCATGGCTTTTACTGTCACCACCCTTGCATGGGGTGCCATTTTTTACAAGTC AGAATTTGAAGCTGCAAATGAATTGGGAAATGTCCGCGATGCCATTAAATGGGGTACGGATTATTTTCTGAAATGTGCTT CTCGAAAGAAAAGATTATACGTGCAGGTAGGGGACCCTGTAGAGGATCACAATTGTTGGGCACCACCAGAAATTATGAAG ACAAAGAGAACAGTATTGCAGATTGATAGTGAGACTCCCGGCACTGAGATTGCAGCTGAAACTTCTGCGGCAATGGCGGC TTCTTCCATTGTTTTTAGGTCTGTCGATCGTATATATGCTCGCCGTCTCCTCAACAAAGCTAAACTGCTTTTCCACCTGG CAAAATCGCATAAAGGAACCTATGATGGAGAGTGTCCCTTTTACTGCTCCTATTCCGGTTACAATGATGAACTGATGTGG GCAGCAACATGGTTATACTATGCTACAAGGAAGCCTATGTACATGAAGTATATACAAGAAGAATCCATAAGTGCTAGTGT TGCAGAATTCAGTTGGGACCTTAAATATGCAGGAGCTCAAATCCTTCTTACTAAGTTATATTTTGAAGGTCAAAAGGATT TGGAAACCTTCAAAAACCATGGTGAAAGTTTCATATGTTCAGTGCTTCCTGAGAGTCCCTACTATGGAATTAAATTGTCT CCTGGTGGCTTCATTCATTTGAGAGATGGAGCCAACACACAATACGCCACCGGCACAGCTTTCTTGTTAACTGTTTATGG TGATTTGCTTGCCAACCACAATCAGAAAGTCACTTGTGGAGGCAAACAGTTTAGCTCGTCCCATCTCCTCAATTTTGCAA AGAAACAGATGGATTACATACTAGGGAAGAACCCTGAAGGGAGATCGTACATGGTTGGATTTGGGAAGAACCCACCAACG CAAGCTCACCATAGAGGTGCATCGGTGCCAAAGTTGTCGGAGAACGATGAGTTCAGTTGTCCGATGAGCTTTGCGAAGTG GTTTTCAAAAGATGCACCGAACCCGCATGAGCTCACCGGAGCCATTGTGGGTGGACCTGACATCTCCGATAAGTTCAATG ATAAGAGATGGGATTCCCCCAACACTGAGTCCTGCACGTATGTCAATTCTCTTGCAGCTGGAGCTCTAGCAAAGCTTGCA GCTATGAGTTGA
Protein sequence (LotjaGi1g1v0371700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTKKVYWAIIVAWLTLFEGNMMLVNGDLNYKEALTKSLIYLEAQRSGKLPSNNRVPWRGDSALDDGKLANVDLVGGYYD AGDNVKYGLPMAFTVTTLAWGAIFYKSEFEAANELGNVRDAIKWGTDYFLKCASRKKRLYVQVGDPVEDHNCWAPPEIMK TKRTVLQIDSETPGTEIAAETSAAMAASSIVFRSVDRIYARRLLNKAKLLFHLAKSHKGTYDGECPFYCSYSGYNDELMW AATWLYYATRKPMYMKYIQEESISASVAEFSWDLKYAGAQILLTKLYFEGQKDLETFKNHGESFICSVLPESPYYGIKLS PGGFIHLRDGANTQYATGTAFLLTVYGDLLANHNQKVTCGGKQFSSSHLLNFAKKQMDYILGKNPEGRSYMVGFGKNPPT QAHHRGASVPKLSENDEFSCPMSFAKWFSKDAPNPHELTGAIVGGPDISDKFNDKRWDSPNTESCTYVNSLAAGALAKLA AMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 5 | 481 | 477 | 4.9E-256 | – | |
| PANTHER | 5 | 481 | 477 | 4.9E-256 | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| Phobius | 26 | 483 | 458 | - | – | |
| Gene3D | 26 | 483 | 458 | 1.6E-157 | ||
| SUPERFAMILY | 28 | 481 | 454 | 3.52E-143 | ||
| Pfam | 31 | 476 | 446 | 5.5E-134 | ||
| ProSitePatterns | 379 | 405 | 27 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0371700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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