Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0372500 |
| Transcript ID | LotjaGi1g1v0372500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit B; TAIR: AT5G27640.1 translation initiation factor 3B1; Swiss-Prot: sp|Q9C5Z1|EIF3B_ARATH Eukaryotic translation initiation factor 3 subunit B; TrEMBL-Plants: tr|A0A151QYS0|A0A151QYS0_CAJCA Eukaryotic translation initiation factor 3 subunit B; Found in the gene: LotjaGi1g1v0372500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85072630..85077149) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGTGCTTAAGTTAAAAAAGGAAAAAAAAAAAACCAAAAGAATATTTACATCTTACACTAGAAAAATTACTTACAATA TAAAAAGGCCAGTGTTAGCCGCAACACGATAACGAAGCCCTAGAATTGTATCTCATTCTCACACAAACAAACATAACTCT TCTTCCTCTACAGAAACCCTAACACCCAGCGAAGCGATAACACTCACACTCACACTCACTCAGAAGAAGGTTTGAGAGTC ATGGCGGCTGTGATGATGATGATGGAAGAAATCAAGGAAAAAGCAAATCGTCTCGAAATCGATCCCTCTTCAATCGATCT CGACTCCATTCACCTCCCACCCGGTGAAGATTGCGGCATCGTCAGGTACATCAATCTCTAACCTTCTCTTTTATCGCCAC TGAAATCGTAAACCCTAGGTGTTGATTTTGCAATTTTCTGTTTCTCGTCGGTTGTGTAGTGACGATGAGGATGTTTATCA AGAGGATAATCTCGAATTCGACTCTGGTTTCGGCAACATTATCGTTGTCGATAACCTCCCCGTTGTTCCTAAGGAAAAAT TTGAGAAGCTTGAAGGTGTTGTTAGGAAAATCTATAGTCAGATCGGAGTTATCAAGGACGATGGTCTCTGGATGCCTGTG GATCCTGAAACGGGGAAAACCGTGGGGTATTGCTTCATTGAATACAATACTCCTCAGGTAATGTAATGCTTTGTTGATCT GTGCTATATGAGTTGTTTGTTGTTTTTGAATGTTTATTGGATTGGACTGTGGGCATTGATTTGATGGGGTTGAATTGGGT GGGTTGTTTCAGGAAGCTGAGCTTGCTAAGGAGAAGACCCACGGTTACAAATTGGACCGTGCTCACATATTTGCGGTGAA CATGTTCGATGACTTTGACAGGTTTATGAAAGTTCCCAATGAGTGGGCTCCTCCTGAGACTAAACCATATACTCCTGGGG TAATGTTTACAACTGTTTGTGCTTTGCTAATATTATTATAAGCATCTAGATTAAGGCAATTCTAGGTTTCTCGTGAACCG CATTTCTATGGAATTGTGTGCATGATTGCATTACTTGTTGGATGTTGGATGGTCTTGGGTTTCTGCAATTTTTGTTTATG ATTTGTGATTTGGTTGGTTTTGATAGATTTTTATGATGCTTTTTGGTCTTGATATCTTTTACAGGAAAATCTTCAACACT GGCTCACCGATGCCAAGGCCCGAGACCAGTTTGTGATTCGTGCGGGTTCAGATACTGAAGTTTTGTGGAATGATGCTAGG CATTTGAAGCCTGATCCTGTTTACAAGCGTACTGTGAGTGGATATTATATTTCAATAACTTTCAATATATGATGTTTACT AGCTCGGTATTTCCTTTCCACAACCAATTTTTATCCCTTTGTGATGTGTTTATATTTTCTGTATTACAGTATTGGACTGA GAGTTTTGTGCAATGGTCCCCTTTGGGCACATACTTGGCAACAGTTCACAGGCAGGGGGCAGCAGTCTGGGGAGGTGCCA CAACCTTCAATCGTCTCATGCGTTATGCTCATCCTCAGGTTTTATGAGTTTTATTTTGCCTTTTCTTTGTGGACATTGAC TTCGTTTCCCCTATTTCTATTCTAAAGTATTTATATTAATATGAATTGCAGGTAAAACTCATTGATTTTTCACCTGGTGA GCGATACTTGGTTACTTATAGTAGCCATGAACCAAGCAATCCCCGTGATGCTAATGTAAGTATTTTTTCTATGTTTATAA TTTTATTTGAATTTTTTCCTGGATAAGGTTTCTAACATCAGCTTTCTTCTTGTAGAGAGTTGTGATTAATATATTTGATG TGAGAACTGGTAAAGTGATGCGGGATTTCAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTACTGGAGGTGTCACTGGG GTGTCATGGCCTGTTTTCAAGTATAACTCTCTCTCTCTCTTCCTCTCTGTGTGTGTGCGTGTCAGTGTGGGTGTATCTGT GTCTAGGTTAAGTGTTTTAGCATCTGACATGGCCAGTGATAAATGTGGTACTATCTTTGCAGATGGAGTAGTGGAGATAA GTACTTTGCAAGGATGGGGAAAAATGTACTCTCTGTATATGAGACAGAGACCTTCTCCCTGGTTGACAAAAAATCATTGA AGGTTGAAAATATAATGGATTTTAGCTGGTCCCCAACTGATCCAATCATTGCACTCTTTGTTCCTGAGAGTGGTGGTGGT AACCAGCCTGCTAGGGTAAGTTTGTATTTTCCTTGCCTTCTCTGGCCAGTGATTGAGAATTCTTTTACTTGGTTATTTTT AGTTAATGGTGATATATTTTGTATAATTATTTTATAGGTTAGTCTGATCCAAATTCCTAGCAAAGAGGAACTCAGGCAGA AGAACCTTTTTAGTGTCAGTGATTGCAAGATGTACTGGCAGAGCAATGGAGATTACCTAGCTGTTAATGTAGACCGATAT ACTAAAACTAAAAAAAGCACATACACTGGCTTTGAGCTTTTCCGCATAAAAGAGCGAGACATACCAATTGAGGTTCTGGA GCTTGAGAATAAGAATGATAAGATTATTGCCTTTGCATGGGAGCCTAAAGGCCACAGGTTTGTAGTTATTCATGGTGAAA ACCCTAAGCCTGACATTAGTATTTACTCTATGCGGACTGCTCAGCACCCTGGTCGGGTTTCAAAGCTCACTACTCTGAAA GGCAAGCAGGCAAATGCTCTGTTTTGGTCACCTGCAGGTCGCTTCATTGTACTAGCAGGTTTGAAAGGCTTAAATGGACA GTTGGAGTTTTACAATGTCGATGAACTTGAAACCATGGCAACTGCAGATCATTTTATGGCAACAGATATTGAATGGGATC CAACTGGAAGGTATATAAGTAATGGTTTAGCAATTGAAGGCAGAAATTTGTGGCTTAATCTTTGTGTAAAATCAGTCTAA AATGGCATTTGCCTTAGAAGTGTTGAATTTTTGTTACTTAAGAATACTGAATCTTTGACTTATTAATTATCACAAATTTA TGTTTGATAACCCTTTTTATACTACAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAAATGGAAAATGGTTTCAACA TATGGTCTTTCAATGGCAAGCATCTTTATCGTATATTGAAGGATCACTTCTTTCAGGTAATTAGTTTTCATTTGTACCGG AGGCATTGTTGGCCATTATGTGCATTACGGTTGTGCAATTAATGATTTATAGATGTACAATGTCTAAGATTTAGATTAGA TGGGGATAGGTTTTAAATTTTGTGATATAGAATTTACGCACTGAAATTGTCATGGCCCTCAATGCCAATGCTCATGTTTT GGCAGTCAGCTTTTAGAGTAACTCTTTGCTAGTATTTTTTTTGTGAATATTGCTCAATCCCATGTTCTTATAATTTTTTT TTTAAATATAGTTCTTGTGGAGACCAAGGCCGCCATCTTTCTTGACTCCTGAGAAAGAGGAAGAGATTGCAAAGAGCTTA AAGAAGTATAGTAAGAAATATGAGGCAGAAGATCAAGATGTGTCATTGTTGCTGAGTGAGCAGGAGCGCGAGAAGCGTAG GATGTTGAAAGAAGATTGGGACAAGTGGGTTAGTGAATGGAAGCGGATGCATGAAGAAGAGAAGTTACAGAGGGAAGAGC TTAGAGATGGAGAGGCAAGTGATGAAGAGGAGGAATACGAGGCCAAGGACATTGAAGTCGAGGAAGTCATCGATGTATCT GAAGAGGTCCTTCACTTTGAGTAGGGTTAAGAGTGAAGGACTGGAGTTGGTGAATTTAAAACCATTTTATATACTTGTCG AATTGTAGTGACTTTAGTTGGTGGGGGATTAAACTCGATTTTGTAGGTTTTCATGATTTATTTTTCTAGTTTTTCTTTTA TTACGGAAGGAATTCTTATTTTTTCCTGAAACTTAAATGAGGCAATTTTGCCACCCCTTGGGGCTGGAACTCACAGAAGT CTGTTCACTCATGTTCCCATGCATTTTCGCACTAACAGAAAGCATGAAAAATAATGAAGGAATGCTAAGTGTGAGTAAAA CAATAGTCTGTTTCTGCATTCTATTATTGGCAAAATGCAATTCTCTCTTGGGGTTGAGGATTATTATTGCACAGCATCTT CTCTACTCAGTTGGTACACCCACACCCAAATATTAGACACTTTTGAACACCTTTTTTTTCTTTTCTCTTTCTATCTCTTT TTAAAATACATCATATTTATCACTTTTTTCTTTTCCATCTCTTTCTAGTGGTTTATATCCTTTGGGTGTTTACCAATCGT TATTCAATGTGCAAACACACGCAAACGCACTGAGATGGAAAATGAATAATTCTTTTTTATAAACTAAAATGAAAGTCGGT TGCATTCCATTGGTACCAAGACACTATGTAACAATTGAAAATAAAGACAACAAATTTGTTACTGAACCCGAATTTTTGGT TTTATTAGGTGAATCTTCTTTCGACTACTCTACAAGTGTG
CDS sequence (LotjaGi1g1v0372500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTGTGATGATGATGATGGAAGAAATCAAGGAAAAAGCAAATCGTCTCGAAATCGATCCCTCTTCAATCGATCT CGACTCCATTCACCTCCCACCCGGTGAAGATTGCGGCATCGTCAGTGACGATGAGGATGTTTATCAAGAGGATAATCTCG AATTCGACTCTGGTTTCGGCAACATTATCGTTGTCGATAACCTCCCCGTTGTTCCTAAGGAAAAATTTGAGAAGCTTGAA GGTGTTGTTAGGAAAATCTATAGTCAGATCGGAGTTATCAAGGACGATGGTCTCTGGATGCCTGTGGATCCTGAAACGGG GAAAACCGTGGGGTATTGCTTCATTGAATACAATACTCCTCAGGAAGCTGAGCTTGCTAAGGAGAAGACCCACGGTTACA AATTGGACCGTGCTCACATATTTGCGGTGAACATGTTCGATGACTTTGACAGGTTTATGAAAGTTCCCAATGAGTGGGCT CCTCCTGAGACTAAACCATATACTCCTGGGGAAAATCTTCAACACTGGCTCACCGATGCCAAGGCCCGAGACCAGTTTGT GATTCGTGCGGGTTCAGATACTGAAGTTTTGTGGAATGATGCTAGGCATTTGAAGCCTGATCCTGTTTACAAGCGTACTT ATTGGACTGAGAGTTTTGTGCAATGGTCCCCTTTGGGCACATACTTGGCAACAGTTCACAGGCAGGGGGCAGCAGTCTGG GGAGGTGCCACAACCTTCAATCGTCTCATGCGTTATGCTCATCCTCAGGTAAAACTCATTGATTTTTCACCTGGTGAGCG ATACTTGGTTACTTATAGTAGCCATGAACCAAGCAATCCCCGTGATGCTAATAGAGTTGTGATTAATATATTTGATGTGA GAACTGGTAAAGTGATGCGGGATTTCAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTACTGGAGGTGTCACTGGGGTG TCATGGCCTGTTTTCAAATGGAGTAGTGGAGATAAGTACTTTGCAAGGATGGGGAAAAATGTACTCTCTGTATATGAGAC AGAGACCTTCTCCCTGGTTGACAAAAAATCATTGAAGGTTGAAAATATAATGGATTTTAGCTGGTCCCCAACTGATCCAA TCATTGCACTCTTTGTTCCTGAGAGTGGTGGTGGTAACCAGCCTGCTAGGGTTAGTCTGATCCAAATTCCTAGCAAAGAG GAACTCAGGCAGAAGAACCTTTTTAGTGTCAGTGATTGCAAGATGTACTGGCAGAGCAATGGAGATTACCTAGCTGTTAA TGTAGACCGATATACTAAAACTAAAAAAAGCACATACACTGGCTTTGAGCTTTTCCGCATAAAAGAGCGAGACATACCAA TTGAGGTTCTGGAGCTTGAGAATAAGAATGATAAGATTATTGCCTTTGCATGGGAGCCTAAAGGCCACAGGTTTGTAGTT ATTCATGGTGAAAACCCTAAGCCTGACATTAGTATTTACTCTATGCGGACTGCTCAGCACCCTGGTCGGGTTTCAAAGCT CACTACTCTGAAAGGCAAGCAGGCAAATGCTCTGTTTTGGTCACCTGCAGGTCGCTTCATTGTACTAGCAGGTTTGAAAG GCTTAAATGGACAGTTGGAGTTTTACAATGTCGATGAACTTGAAACCATGGCAACTGCAGATCATTTTATGGCAACAGAT ATTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAAATGGAAAATGGTTTCAACATATG GTCTTTCAATGGCAAGCATCTTTATCGTATATTGAAGGATCACTTCTTTCAGTTCTTGTGGAGACCAAGGCCGCCATCTT TCTTGACTCCTGAGAAAGAGGAAGAGATTGCAAAGAGCTTAAAGAAGTATAGTAAGAAATATGAGGCAGAAGATCAAGAT GTGTCATTGTTGCTGAGTGAGCAGGAGCGCGAGAAGCGTAGGATGTTGAAAGAAGATTGGGACAAGTGGGTTAGTGAATG GAAGCGGATGCATGAAGAAGAGAAGTTACAGAGGGAAGAGCTTAGAGATGGAGAGGCAAGTGATGAAGAGGAGGAATACG AGGCCAAGGACATTGAAGTCGAGGAAGTCATCGATGTATCTGAAGAGGTCCTTCACTTTGAGTAG
Protein sequence (LotjaGi1g1v0372500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAVMMMMEEIKEKANRLEIDPSSIDLDSIHLPPGEDCGIVSDDEDVYQEDNLEFDSGFGNIIVVDNLPVVPKEKFEKLE GVVRKIYSQIGVIKDDGLWMPVDPETGKTVGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVNMFDDFDRFMKVPNEWA PPETKPYTPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTYWTESFVQWSPLGTYLATVHRQGAAVW GGATTFNRLMRYAHPQVKLIDFSPGERYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGV SWPVFKWSSGDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFSWSPTDPIIALFVPESGGGNQPARVSLIQIPSKE ELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVV IHGENPKPDISIYSMRTAQHPGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGLNGQLEFYNVDELETMATADHFMATD IEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKSLKKYSKKYEAEDQD VSLLLSEQEREKRRMLKEDWDKWVSEWKRMHEEEKLQREELRDGEASDEEEEYEAKDIEVEEVIDVSEEVLHFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 1 | 21 | 21 | - | – | |
| PANTHER | 7 | 711 | 705 | 0.0 | – | |
| PANTHER | 7 | 711 | 705 | 0.0 | ||
| PIRSF | 7 | 712 | 706 | 3.5E-265 | ||
| Hamap | 49 | 712 | 664 | 96.941 | ||
| SUPERFAMILY | 58 | 140 | 83 | 3.26E-11 | ||
| Gene3D | 60 | 144 | 85 | 4.8E-19 | ||
| CDD | 60 | 144 | 85 | 1.28041E-38 | ||
| ProSiteProfiles | 61 | 148 | 88 | 10.19 | ||
| SMART | 62 | 143 | 82 | 3.5E-4 | ||
| Pfam | 83 | 137 | 55 | 1.5E-6 | ||
| Gene3D | 182 | 386 | 205 | 4.6E-9 | ||
| SUPERFAMILY | 218 | 602 | 385 | 6.28E-29 | – | |
| Pfam | 405 | 605 | 201 | 1.5E-64 | ||
| Gene3D | 410 | 622 | 213 | 6.9E-9 | ||
| MobiDBLite | 673 | 696 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. | ||
| Molecular function | Translation initiation factor binding | Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation. |
Expression pattern of LotjaGi1g1v0372500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…