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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013979
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.888s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0283109.1
n.a. WD-repeat cell cycle regulatory protein [Glycine max] gi|351727655|ref|NP_001237168.1| chr0 146731979 146736047 -
2 domain predictions
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Lj0g3v0283109.3
n.a. PREDICTED: protein FIZZY-RELATED 3-like [Glycine max] gi|356569370|ref|XP_003552875.1| chr0 146731979 146736047 -
2 domain predictions
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Lj0g3v0307769.1
n.a. PREDICTED: eukaryotic translation initiation factor 2A-like [Cicer arietinum] gi|502142951|ref|XP_004505162.1| chr0 160665354 160668470 +
2 domain predictions
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Lj0g3v0346419.4
n.a. Translation initiation factor 3B1 isoform 2 [Theobroma cacao] gi|508705052|gb|EOX96948.1| chr0 181736295 181738259 +
2 domain predictions
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Lj1g3v1788200.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Cicer arietinum] gi|502132544|ref|XP_004501412.1| chr1 21394353 21398627 -
2 domain predictions
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Lj1g3v1788450.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Cicer arietinum] gi|502132544|ref|XP_004501412.1| chr1 21537988 21541963 -
2 domain predictions
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Lj1g3v2835950.1
n.a. PREDICTED: eukaryotic translation initiation factor 2A-like [Glycine max] gi|356500094|ref|XP_003518869.1| chr1 32198742 32202168 -
2 domain predictions
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Lj2g3v0866670.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Cicer arietinum] gi|502132544|ref|XP_004501412.1| chr2 13374815 13376792 +
2 domain predictions
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Lj2g3v2003020.1
n.a. PREDICTED: protein FIZZY-RELATED 2-like [Glycine max] gi|356565305|ref|XP_003550882.1| chr2 30581476 30588119 +
2 domain predictions
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LotjaGi1g1v0371200_LC.1
n.a. Eukaryotic translation initiation factor 3 subunit B; TAIR: AT5G27640.1 translation initiation factor 3B1; Swiss-Prot: sp|Q9C5Z1|EIF3B_ARATH Eukaryotic translation initiation factor 3 subunit B; TrEMBL-Plants: tr|A0A151QYS0|A0A151QYS0_CAJCA Eukaryotic translation initiation factor 3 subunit B; Found in the gene: LotjaGi1g1v0371200_LC LjG1.1_chr1 84934707 84940782 -
2 domain predictions
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LotjaGi1g1v0371200_LC.2
n.a. Eukaryotic translation initiation factor 3 subunit B; TAIR: AT5G27640.1 translation initiation factor 3B1; Swiss-Prot: sp|Q9C5Z1|EIF3B_ARATH Eukaryotic translation initiation factor 3 subunit B; TrEMBL-Plants: tr|A0A151QYS0|A0A151QYS0_CAJCA Eukaryotic translation initiation factor 3 subunit B; Found in the gene: LotjaGi1g1v0371200_LC LjG1.1_chr1 84934932 84940704 -
2 domain predictions
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LotjaGi1g1v0372500.1
n.a. Eukaryotic translation initiation factor 3 subunit B; TAIR: AT5G27640.1 translation initiation factor 3B1; Swiss-Prot: sp|Q9C5Z1|EIF3B_ARATH Eukaryotic translation initiation factor 3 subunit B; TrEMBL-Plants: tr|A0A151QYS0|A0A151QYS0_CAJCA Eukaryotic translation initiation factor 3 subunit B; Found in the gene: LotjaGi1g1v0372500 LjG1.1_chr1 85072630 85077149 -
2 domain predictions
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LotjaGi1g1v0485900.1
n.a. Eukaryotic translation initiation factor; TAIR: AT1G73180.1 Eukaryotic translation initiation factor eIF2A family protein; Swiss-Prot: sp|O74965|EIF2A_SCHPO Eukaryotic translation initiation factor 2A; TrEMBL-Plants: tr|A0A1J7G1L6|A0A1J7G1L6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0485900 LjG1.1_chr1 99904377 99910603 -
2 domain predictions
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LotjaGi6g1v0062300.1
n.a. WD-repeat cell cycle regulatory protein; TAIR: AT5G13840.1 FIZZY-related 3; Swiss-Prot: sp|Q8LPL5|FZR3_ARATH Protein FIZZY-RELATED 3; TrEMBL-Plants: tr|A0A0L9U9C3|A0A0L9U9C3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0062300 LjG1.1_chr6 11324806 11327810 -
2 domain predictions
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LotjaGi6g1v0109800_LC.1
n.a. Eukaryotic translation initiation factor 3 subunit B; TAIR: AT1G73180.1 Eukaryotic translation initiation factor eIF2A family protein; Swiss-Prot: sp|Q54PV7|EIF2A_DICDI Eukaryotic translation initiation factor 2A; TrEMBL-Plants: tr|I3SWY0|I3SWY0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0109800_LC LjG1.1_chr6 25003046 25008259 -
2 domain predictions
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LotjaGi6g1v0109800_LC.2
n.a. Eukaryotic translation initiation factor 3 subunit, putative; TAIR: AT1G73180.1 Eukaryotic translation initiation factor eIF2A family protein; Swiss-Prot: sp|Q54PV7|EIF2A_DICDI Eukaryotic translation initiation factor 2A; TrEMBL-Plants: tr|I3SWY0|I3SWY0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0109800_LC LjG1.1_chr6 25003046 25008259 -
2 domain predictions
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