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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0375400 |
| Transcript ID | LotjaGi1g1v0375400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial transcription termination factor family protein; TAIR: AT2G03050.1 Mitochondrial transcription termination factor family protein; Swiss-Prot: sp|Q84X53|MTEF1_ARATH Transcription termination factor MTEF1, chloroplastic; TrEMBL-Plants: tr|G7KGN5|G7KGN5_MEDTR Transcription termination factor family protein; Found in the gene: LotjaGi1g1v0375400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85383485..85387801) extracted from Lotus japonicus Gifu genome v1.2.
CCCGAATATGTTGGCTAAAACCCCATCTTCCTCGTCGACTTCTTCCACGACATGTCGATAATAGAACTTCACCCCCAATT CCTCTTCTCTCAAAACCCCATCCCAAAACCCTTCCAAAACCCTACCTTCAATCTCAGAATCAAACCATTAACATCAATCG CCCAATTTTCTCAGCAACCAAACACCCTCCCAGACCGAGGCCTCATTTTCCGGGAAAAATCACTCTACCTCCACAAACTC AACATCAACCCAGAAAAAGCATTCCGACAGAATCCCACCCTCCGAACTTGCCCCCTCACCACCCTCAAATCCGTGGAACG ATGCCTCTCTTCAATGGGTATTCCCCGCACCGCCATGGGTCGCATCCTCGACATGCTTCCTCAGCTTCTCACACGCGACC CTCACAGGGACCTCTACCCCATCCTCGATTTCCTCCTCCATGAGGTTCGAATCCCTTACCCCGATGTTCAGAAATCGATT TTACGATGCCCCAGATTGCTGGTTTCAAGCGTGGAGGAGCGTTTAAGACCCTCGCTTTGTTTTCTTAGGGAGTTAGGGTT TGTTGGGCCGCATTCGCTTACTTGCCAGACGACTTTGCTTCTGGTTTCAAGTGTTGAGGATACCCTTTTGCCTAAAGTTG AGTTCTTGAGAGGTTTGGGGTTCACTCGTTTGGAGGTTTCGAATATGATTGTTAGATCGCCTGCTTTGTTGACATTGAGT GTGGTGAATAATTTGGCGCCGAAGGTGGAGTTTTTCTTGAAGGAGATGAATGGGGATGTTGCTGAGCTTAAGAGGTTTCC TCAGTATTTCTCTTTTAGCTTGGAAGGGAGGATTAAGCCACGCCACGCGTTGTTGGTTCGGCATGGTGTGTCTCTCTCTT TGCAGCAAATGTTGCAGGTCAGTGATGGCGGGTTGGAAGATAGGTTGTTTGAAATGCGGTTGCGCGGGCTTGTGGGAAGA CAAAGGTAGTGGTTGTTTGTTGTTTTTGTTAGCTGGGAGTTGTCTTTGTTAGCTGGGGGTGGAAATGTCATTGTTTTTTT CTAGATTGGAAAGGCTAACACACATATGTGCACATCTGATAAGTTTGTGTTAGAGAAAGGTGTTCAAATACAATAAAACT AGGTTTCATTTGTAAAAAAATAAATGAACATGACTCCCTGATATTTACTGATTAATGGATCTTTCAAGCAGCAATCCCTC CCTTCCCATGTGAGAGGAGGGAGAGATTGCTAAGTAGTTTTCCTCAGGATTGTTTACAGTCTGTGATATTTATGACTATC CCACAAGTAATTGAGCAAGTGCATTAATGCATAGACTTCAATTGTCCTGAATTTGGTTTTGTCTTCTTAAGTTTGAAAAT TTCAGCCAAAACTATCTGCAATTTCAGCTCCATTGTCCACTTATTAGTGAGAATACAGTTAAGTTTCATATCTGTGAATC TTCCCTTACCTTTTTGTGTGCTTGAATTATACTTCAAGGTTTGTTCATGTGACTATGCTCAGTTACTTTATTTTATTTTG ATTTTATCAAGTATGAGTTTCTTTGCTGCAGCTGTGAAATAATGTTGAAACTGACTCAAGTTTTAGCTCACTATTGAAAC TAGACCAAGTCAATTAAGTTGATGCAAATATGCAAGATTAGTTTCTTCCTGGATTATTTTAATTCTATGGAATATAATCT GAGATAATAATTAGGACAGATGTGTGTAGGTTGTTTTGAGTTTCAGTGGTGTAATAAACTGATGTTGCTGAAAGAAATGA AGTGCCCACAATACGGTTTAGGGGTTGCTTCATATGGTAAATATGTAACTTTCACCACTCTAAATGTTACACAGTTACCC TCAGTATTAATCATTGGTCTTATTTATATATCTAACAATCCTAATTTGCTCAGATTAATCACTATGTAACCCTTTCCCAT AATTGCCAGTTTCTCATTTTCCCTGCAGCCACAGTCCTCCAACTGTGCCGGCGAGTCTGTCACTGTCACCACCCGAGCCT CGCCTTGCCATAATCAACCCCAGACCTGCTTCATTTCTTCCTCAGAGGTCACCTCCCATGACTGTGACATTATAAAGTGC AAGAGCTCTCAATGATTCATTCAAAAATTGTTTGTAGATGAAGACCTCATGATCCTCCTGTACTTGTGAATGATGGGAGA GACTTATATGGCGTGTTCCAACTATACTGGGTCTGTGCATGAAAGCTGTGCCGTTGTGCCTACATATAGTAAGTACATTC TTAAGCTAGTTTTCCCATTAATCAAGATTAAATCGTACTTAGAAGGCAATATGCATATATAGTTTGCATGGTTATGCACT ACTTGAGAACCTTTGAAATAGAAAAGCTTAAAATGCTTGAATTAAGGGGAACACTCTTTCCCTCCAAGTCTCTCATACAT AAGCTTGTCGTCTATCTAATACTTGGTTAGTCACTTAGTCCAATTTTGATGTACCTTGTGTCATTTGAGATTTTGAGGAT AGAAAGAAATCTAAAGAAATTTTTCTTCAGTTTTGCAAAGCATTTATAGTTCTCTTGCAGTACTTATGATATGTGTTACT TTTTTTTAGGATGTTGCCACCTGAATCTCAAGTCTACGAGTCTACCTCTCCTATTTTTACAGACGCCGTAGTAGATTTTG AAGTCTTAAAGCATGTAATCTTTGTTTAACACTCTTCCCCTGTGGTCTGATCCTTTTAATACTTTTCCAGTTTGTGTGTG TGTGTGTGTTGTTTCTAGGTTTTTTTACCAAAAGCTAGGGGAGATGGCCCATTAATGTCAGATGGAAGATTTTTTTTTTT TTTTGATAGGCATGTCAGATGGAAGATGATAATGAAAATTGGATATCTTATTGTGCAACTTGAGATATTCTGACATTCTG TTGGTTACTCATATTCATACTGGTATAATTTGTGTTAAGCATAATGGTGATGCTTTGCCAAACATCATTTGCTGCCGAAT CATTATAGACAGGCTTTGTCATTTTTTGAAGTATTTTTATATCAGTTTCATGATGAATGAAAGGTTTTTGATGTTTTCAT ATTGTTGTGTTTTGCTTAGATGTTTATTTTCTTTTGGTGATATGATGGGATAGACGCATCACAATAGAGTGGGCTTAAAA GGAGTTATTAATCATATGCGTTCAATTACTTCCTAAGATATTCTTGTTTTTTGTGAGAAATAACTTATAATTCAAGGGCA ACTTGGTGGACCCTTGTTTTCTTGATACTGGTATGTCAATTGGTTTCAATATATTTTGGGTGCCCACTAGGGTGGACAGT GGACACTTTCATTATTGGTCCACCGGTGGACTAAGGTTTATATTAGTAATTTACACTGGATTAAAACATATTTAAAAAAT CCCAAAATGACCTCTCTGATTTCTCTCTCTCTTTCCATCAACAACCAATCTCTTGACCCTCCCCCGCAATCTGAATCTGA AATTCATCCCCTACTAATTCTATAACTTAAAAATCAACAGAAGGAAGAAAGAAATTAAATCTCTTCAAACGCCTTCTGTG CATCAACCACCTTGTTTTTTTTATAAGGAATGATTCCAGAACCCAATTACAAAAAGACTGAAAAGAGTAACAAAGAAATT AAAATTACAGCAAACTTAGACAAAAGATAAGCAAACTAAGACAAAAGATAAGGGAAGAAAATAAAACAAATTAGAGCAGA ACAGAGGAAAAGCTTTCAAGGAAGAAGCACAATCTGAAACAGAGCCCTTCCTAATTAATTTGCACACATCAGCCATTCCA AATCCAGTTCATACCAGACCAACAAAAAACGCAAGAAAAAGCTAGCCTTATATCTGAACTAATGGTTGCGCCACCACGAA CCCACAACAACCACACGAGCTCCTCTCCCATGGCTGCGCCACCGCGAGTCACGACCACCTCCCCTTGTCCAGCTGCGGGC CACAACAGCCGCAACACCACCACCTCCAATCCTCCATAGTTGACGAGGAACGATGAAGAAGGATTGTGTTTGGGCATTTT GAGGGACAATTATACCCTTTTAAGTGAAAATTAATCTTGACCATTGATCTAAAGAATATTCTTATATTCCAAGATTCAAT GGTAGTTAATTGTGGTCCACCGGTGGACCGAAATAAAAGTTGTCCACCCTAGTGGGCACCTATATTTTGTAAGGTTTGTG TTTAAAGAAACCGCTTTTAAAATCAAGAGAGAAAATTGTACCAAAAAACACCAGGGAGCAAATATAAACTGATCTGAACT CACATTGATAATCTTTAACACTAGTATTAATAAGTTTCAAAAAAAAACTAGTACACTTGACTTGGCTGTCGGCTGTT
CDS sequence (LotjaGi1g1v0375400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATAATAGAACTTCACCCCCAATTCCTCTTCTCTCAAAACCCCATCCCAAAACCCTTCCAAAACCCTACCTTCAA TCTCAGAATCAAACCATTAACATCAATCGCCCAATTTTCTCAGCAACCAAACACCCTCCCAGACCGAGGCCTCATTTTCC GGGAAAAATCACTCTACCTCCACAAACTCAACATCAACCCAGAAAAAGCATTCCGACAGAATCCCACCCTCCGAACTTGC CCCCTCACCACCCTCAAATCCGTGGAACGATGCCTCTCTTCAATGGGTATTCCCCGCACCGCCATGGGTCGCATCCTCGA CATGCTTCCTCAGCTTCTCACACGCGACCCTCACAGGGACCTCTACCCCATCCTCGATTTCCTCCTCCATGAGGTTCGAA TCCCTTACCCCGATGTTCAGAAATCGATTTTACGATGCCCCAGATTGCTGGTTTCAAGCGTGGAGGAGCGTTTAAGACCC TCGCTTTGTTTTCTTAGGGAGTTAGGGTTTGTTGGGCCGCATTCGCTTACTTGCCAGACGACTTTGCTTCTGGTTTCAAG TGTTGAGGATACCCTTTTGCCTAAAGTTGAGTTCTTGAGAGGTTTGGGGTTCACTCGTTTGGAGGTTTCGAATATGATTG TTAGATCGCCTGCTTTGTTGACATTGAGTGTGGTGAATAATTTGGCGCCGAAGGTGGAGTTTTTCTTGAAGGAGATGAAT GGGGATGTTGCTGAGCTTAAGAGGTTTCCTCAGTATTTCTCTTTTAGCTTGGAAGGGAGGATTAAGCCACGCCACGCGTT GTTGGTTCGGCATGGTGTGTCTCTCTCTTTGCAGCAAATGTTGCAGGTCAGTGATGGCGGGTTGGAAGATAGGTTGTTTG AAATGCGGTTGCGCGGGCTTGTGGGAAGACAAAGGTAG
Protein sequence (LotjaGi1g1v0375400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIIELHPQFLFSQNPIPKPFQNPTFNLRIKPLTSIAQFSQQPNTLPDRGLIFREKSLYLHKLNINPEKAFRQNPTLRTC PLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRP SLCFLRELGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMN GDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDRLFEMRLRGLVGRQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 300 | 288 | 2.5E-130 | – | |
| PANTHER | 13 | 300 | 288 | 2.5E-130 | – | |
| Gene3D | 52 | 173 | 122 | 1.5E-14 | ||
| SMART | 68 | 98 | 31 | 580.0 | ||
| Pfam | 91 | 168 | 78 | 1.5E-6 | ||
| SMART | 103 | 135 | 33 | 34.0 | ||
| Pfam | 134 | 285 | 152 | 7.5E-31 | ||
| SMART | 140 | 171 | 32 | 1.9E-5 | ||
| SMART | 174 | 205 | 32 | 0.14 | ||
| Gene3D | 174 | 288 | 115 | 1.1E-18 | ||
| SMART | 210 | 242 | 33 | 8.4E-5 | ||
| SMART | 243 | 274 | 32 | 2.7E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Double-stranded DNA binding | Interacting selectively and non-covalently with double-stranded DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0375400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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