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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0378000 |
| Transcript ID | LotjaGi1g1v0378000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G31800.1 WRKY DNA-binding protein 18; Swiss-Prot: sp|Q9C5T4|WRK18_ARATH WRKY transcription factor 18; TrEMBL-Plants: tr|I3SVN4|I3SVN4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0378000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85760239..85762663) extracted from Lotus japonicus Gifu genome v1.2.
AATTATTACTCCATATTTCCATCCTTTCATCTCACACTTCACAGGAGTACAATTTTTGCTTCAACTCTATATTTTAATTA CTTAGTTTCTGTATTACTTAATTCTTCTTCTATGGAACCAACAACCTGCAGCGTGGTGGACACTTCTCTGAACCTCAACG TTGCTCCTTCTTGGGACACAGTTGTTGACGTTTCGGTTTTGGTTGAAGAGTTAGAGCGTCTGAATAGTGAGAATAAGAGG TTAACTGAGACGCTGAACCACATATGCGACAACTATCTCACCATGCAAAAACATTTAGCCCAACTCAACAGTAACAGCCC GGATGATTTTGAAAAAGAAGCAGGGATACCATCGCGGAAGAGAAAGGCTGAGAATCTGTTTGTTTATGGTAGCAGTGGCT ATACTGAGTGCAGCACCATTACTGAGGAGGAGAATACAATATTCAAAAGGCCTAGCACTTCGCCAAAGGTTTCCAAGGTT CTTGTTCGGACTGAAGCATCTGATACCAGCTTAGTAAGTTCAATCTTATTTACCATATATATTTGTGTAGCATTTGGGCT TATGAGTAAAGTTTCTCAGGTTAATTGCAAGTACTGACTAAGGATTATTAATTTATTTGTGTTTTTGGGTATTGAAGTAT GTGAGAGATGGATATCAGTGGAGAAAATATGGTCAGAAAGTTACCAGAGATAACCCCTCTCCTAGGGCTTACTTCAAGTG CTCTTACGCCCCTAGCTGCCCTGTCAAGAAGAAGGTAATTGACACAAAACTTTGTTGTTCTTGATTATAGAATATTAAAG TTCGATTCACAATTTTAAAACACACACCAAGTGAAAATAGAGAAGAATGGAAGATTCGATGAACGACGTGATATGAGAGA AGAGATGGATAAAAAGATAAATAAAGTGAACATGAAATGAAAAAAAAAAATGATATGTGAATAAATCAGAACTCTTGATT GTATACAAGATATGAAAAAAATAATCGATCGATGGGCATGCACCGCTTTTGATGGACACACACTCGACAACACCAGCTGA AATTTGTGAAAGGTTTCTAGCGGCCACCAATTTCAGAGTTAGGAAAAATATAACTCTGCAAAACATCACAAGTTGTAGGT GTGTCGTCAAAAGTGGTGTTCACAAATTGTAGATACAATGCATATTTTAAAATTACTCTACAGCTGATTTTAAGATGGGA AAATAGTGAATTATTAATTTCAGCCAATATTTAAAATATTTCTTTTGAAATATATCTCCAAATTTTAGAAATGCATTTGA ACTAATCATTCAAAATAACTTTTTCTTTTAAGTATTGACCCTCCCAATCTTTGAAATGTGTTTCAAAGAAAAGAATTTGA AGAACCAAAGTCAATAATTTATACAGGAAAAAAAAAACATATTCAACCATTTTAAAGTGAAAACCCAATTAATTGTGGCT AGAAGCTTATTCCTGAGTGTCAAATTTGATTCCCAATATAAAAATCAGTTAATCTAACTATGCTAATAGACATCATCTGA AATAGTGATCACTTTTATGATCATGATGATCATATGTTAATATAGGTGCAAAGAAGTGTAGAAGACCCTACCATATTGGT AACAACTTATGAAGGAGAGCACAATCATGCGCATCATCAAGCTGAAATATCACTGTGTTCAAGCCAAAGTGAAACTTCAG GTTCAGTTCCTACAGCTTCCTCACCCACTCTCATGAATCCGAGGATAGGTCCAACTTTTACGCTTGACTTGATCCAGTCA AGATTAGTTGACAATCACAATGCTCAAAAGTCACCATCTTCTATCCAGCAGTTTTTAGTTCAACAAATGGCTTCTTCTTT GACAAGAGATCCTAATTTTACAGCCGCACTTGCTACAGCCATTTCAGGAAGGTTTCTAGACCACACTACTTCTATGGAAA AAAGGTGAATTAACAAATATGTATTGTTGTTACTGTTTTTGCTACATGCATGTGGAGGATGGAGCCATGTTACAACTATA TGTGATCTGTAATTGTTTATCAATATTGACCAAGCAAGTTCTTGCCATGAGGAACTATATTTCCAATAGAGTTCTAAGAA AACTGCATTGTAACGAATTGAGAGCTGCCATTTGGTAGGAAAAGTGTGTTTCGTTAGAAAAAGTGACAAACAATACGCAG AGCTAATGTTGGTCAGAGTACTGTCGATAGTTGGAGGCTTCAATTACATCAAGAAGAATTTATTGGGAGTCTTATCCACT AAATGTGATTTTAGAGTTTTAAGAGGGAAACAAAACTCTCTCCCACGGATGCACTGCAGCTTGTGTATAAATGGATAGCA CAGTAAAAATATAAATAATTAATCTCACACTCCAAATTAATTATGACCCTTAAATTTAAAATCAATGGATAGGATGTGAT TGGAGGGGGCTGGAGTAGATTTGGC
CDS sequence (LotjaGi1g1v0378000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCAACAACCTGCAGCGTGGTGGACACTTCTCTGAACCTCAACGTTGCTCCTTCTTGGGACACAGTTGTTGACGT TTCGGTTTTGGTTGAAGAGTTAGAGCGTCTGAATAGTGAGAATAAGAGGTTAACTGAGACGCTGAACCACATATGCGACA ACTATCTCACCATGCAAAAACATTTAGCCCAACTCAACAGTAACAGCCCGGATGATTTTGAAAAAGAAGCAGGGATACCA TCGCGGAAGAGAAAGGCTGAGAATCTGTTTGTTTATGGTAGCAGTGGCTATACTGAGTGCAGCACCATTACTGAGGAGGA GAATACAATATTCAAAAGGCCTAGCACTTCGCCAAAGGTTTCCAAGGTTCTTGTTCGGACTGAAGCATCTGATACCAGCT TATATGTGAGAGATGGATATCAGTGGAGAAAATATGGTCAGAAAGTTACCAGAGATAACCCCTCTCCTAGGGCTTACTTC AAGTGCTCTTACGCCCCTAGCTGCCCTGTCAAGAAGAAGGTAATTGACACAAAACTTTGTTGTTCTTGA
Protein sequence (LotjaGi1g1v0378000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPTTCSVVDTSLNLNVAPSWDTVVDVSVLVEELERLNSENKRLTETLNHICDNYLTMQKHLAQLNSNSPDDFEKEAGIP SRKRKAENLFVYGSSGYTECSTITEEENTIFKRPSTSPKVSKVLVRTEASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYF KCSYAPSCPVKKKVIDTKLCCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 174 | 166 | 5.3E-72 | – | |
| PANTHER | 9 | 174 | 166 | 5.3E-72 | – | |
| Coils | 27 | 54 | 28 | - | – | |
| Gene3D | 121 | 179 | 59 | 5.0E-18 | ||
| SUPERFAMILY | 133 | 174 | 42 | 3.92E-16 | ||
| SMART | 136 | 182 | 47 | 2.3E-11 | ||
| Pfam | 138 | 175 | 38 | 2.1E-15 | ||
| ProSiteProfiles | 138 | 174 | 37 | 16.834 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0378000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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