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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0378400 |
| Transcript ID | LotjaGi1g1v0378400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stromal cell-derived factor 2-like protein; TAIR: AT2G25110.1 stromal cell-derived factor 2-like protein precursor; Swiss-Prot: sp|Q93ZE8|SDF2_ARATH Stromal cell-derived factor 2-like protein; TrEMBL-Plants: tr|I3TAT1|I3TAT1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0378400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85810928..85815847) extracted from Lotus japonicus Gifu genome v1.2.
AAAACCACAATATTTAGAGAGGGCCATTAACAATCTTCCACGTCATCCATATTTCCACGTATCAACTCCCAATTGGTCCC AGCTATGTCAAGGAACGTGTCTTCTCCAAACGCAGAAAGAAGAAGCTGAGTAAGTAAACTCGTTAGCATCATCACCATTG AATTACACTGCAGTTTCCACCATTACACAGTGAATGCACTCTAATCTCAACCTTCTCCGATCTGGATAGTAACCCGGGTC GAACCGTGGCTTCCTCAGGCTCCAACTCGCAGAGCCTCTCTCGAAGAAAACCACCTTCTTCTTCTTCTTCTTCTCCTCCG CAACAACCACAATCCGGGTCGACCCGGATCATTTACCGGGAATCGAGAACCCGCTCGGAATCGGAGTTTCCGATCTGGCA GCAAAACTGGTTCATCGCATTGCTCTTCCTCATGGCTCTCGGATTCTTCGCTTTCGCTCTCTTCCTCTTCCTCTCCCTCG ATTCTGAATTCTCCTTCTCTCCTTCTTCCTCCGCTTCCGCCTCCGCATCTACCTCCGCCGCTTCCTCCGAAGGCGTCGAG GTTCGGTTCGATTCTTCTTCTTCAATCTCATTTCTAGGGTTACGGATCTTACAATTTTCAATGCGAACTAACTTGATCTC ATGATCTTGTTCGTTTTGCAGGTGCAGGTTACTTATGGATCCGTTTTGAAGCTTATGCACGAGAAGACGAAATTCCGGTT GCATTCTCATGATGTGCCGTATGGTTCTGGAAGTGGACAGCAATCTGTTACTGGTTTTCCTGATGTTGATGATGCCAACA GTTACTGGGTAACCAAACTTCTTTGAATTTTTCGTTTTTGTTTACTGTTTTGTATCAATGAAATGATAACATGTGTTGAT CAATGTATTCGAATTTTGATGCTTAGCATTTGGTCTTTGTTTTGAGTTTTTTGAGTTTTGAGTTGAGAATTGTGCATTTG TTTGCAGATTGTGAGGCCTGAGCCAGGAACTGGTGCTAAACAAGGTGATGCCATAAAAAGTGGCACCATCATTAGATTGC AGCATATGAGGACCAGGAAGTGGCTGCACAGCCATTTGCATGCATCCCCAATATCAGGCAATCTCGAGGTGATTGTTTTT TTTCTCCTCTGTAGAAAATTTGTTGGTAGTTTATGGGATGCTTCCAGGTCTCTTAAATAAACTAATGTTGCGATGTGTTG CATTTGCCTCATTCAATGTATGATTGTAAATTATGCAGAGTCTTTATAAATTATAAATGCATTTGGCATCTCATTGATAC AATATTGCGTGTGGCACCTTCTTTTTGCAGTTCTGTGTCTGTGTTAAGGTTTTCAACTTTTGTGACACTGACTAGATATT TTCTCAGAATATTGTTTCATCGATTCTCTGGATATTGTTTCATCTTTGTGACTTTGTCTCAAGTTATTAGAGATTAAGTT CCTTGTTTATTTCCATTACTTTTCCTTGAGAGTGTGTGGTATTTTAAATGAATGGAGAATCGCACAATCTAATGTATGAA AACGTTGAAGATTTGTTTATTTTGAATTTATTGTTAATGCAGACTAATCACTGTATAATTAGGAACTCTAGTCTATTTAT TTCAATCCATAAATTCTGGCTGAGATTTGTGGTTGGTTTTTCCCAAAGTTATTTGCTCTGTAAGTCCTGACATCACTATA ACGTGTGCAAATACATATCATCTGAGGCTTTGAGGAAACTCGTCCATCTCCTATCATTCTACCTCTCATCCTTGTTATTT GATCATTCTCATCTTCTAAAGGCCGTATCTATAAAGAATCTCTCCAGGTTTCTTTGTTTGTTAATGCCTGTTTGAACGTT CTAAGGCTTCTTAACATCCGATTCAATTAGCTCAATGAAGGCAATGGGTTCCTTCTTCATCTGGATGTCTCAAAAAGTGT GAAAATGGTTATTTCAAACATAGTGTTAATATCTCCACTCAACTAGTATTTATTTCTTCAAATTTGTCTTATGAATTAAA CGTCCTTTTCTGAAGCAAAATGGAAATATCTTGATGTAACTCCTGTTCTTCCATTCCCGGGGTCTTGCAAGCTAGATGGG TCCAGCCCAACCCAATTCTAGGTTAACCGCTATGTGAAAAAGTTTTTTACCCCACTTAGGTTGTTTGAAGAAGATGTGAT TGCATCTATACCCCATGATCTTGATTGTGGAAAACTTGACCCCAACACCTCACCAACCACCCTACCCACCACATTTTCAT TTTGTGGAAGGGGAAGTAGAGGGTCATACACGGGTTTCAAGTCATAGAAGGTTACGTAGGAAGGCGTAGGACAATGTATC TATACACTAAGCACTAACATTCATTTTGTAATCTTGTACTGGTTTAAAGGCTCGGTTCATATCATTTTGAGGATGATGTG AACAACTCTTGTTCACATTTGTGCTAAAAGTCAATGCTATTTATCTCAATGACGTCAAGTGATTTATCAATTATCGACAT TGCCTAGTAGTGGGTAAGTGGGATAAGGCTAAGGTGTTTAAACTCAAGGCGAGAGTTCAGGTAAACTCATGGAGTGCTTG TAAACGCGTAAGAGTCTAGCTTATGCAAAAATAATATTTCAAATACCACTATAATGATGAAATACCCCAATAAAAAAATT CTCAAATAGCCAAACCATACAATAACAAACATATAAGAAGTTAAAATCATACATAAAATCACTAAATATAAGTTCGTAGG AAAAAAATAACACAAGTTCATAAGGTAAAAGACTGAAAAATTCAAATGAGAGTAAATAAGTCAGGATCTTCAAACAAAAG TAAAAATATAACTTTTTATAATCCTTTCAATATGTGATTATCGATTCATAATTTGAAACAAGAAAGGTTTATATAACATA AAGATTCAAAATCAGGGTTGGTAGAGAATTTTAGAAATATTGCTGCAGCTCACTCTTGAGCGCAATAGGGAAAGAAATAT TAGAGAAAAGAGGAAACGGGACACAATCGAGAAATTTTTGAAGAATAAAAGTAGTACTGCAAATATTGTGTCATAAAATG TCGTCATTCTGGTAAAAGAAAATTGATTTTTCTCCATGTTTTGCTGAACTCGTGAACTCAGAAGTAAACTCGTGAGCTTA CCTAAGTTTACCGAGTTCACCGAGTTTATCAAAAAGAGAATTTACATGCGATGTAACTTATTTTGGTTAACCTAGAATCA TAAACTCGCACGATTTTACAAGTTAAAACTAGAGTTGAACTACCATGATAAGGCTTGGTTTTTGTACAACAACTAAATCA ATACTTTTACATTTAACCATCACTTGTATGTATTCCATCGTATCTTTATCTTCCCTCATATAAACTGATAGCAAAAATGT TGTCCTGAAGTTCTTGAACTATAGAATTTAAATAAAAAAGGTTTTTTTTTTCTAAAACCCAGAAATTTTTTTATGGTCCT GTTTGGCTTCTTTGCATTTGGGTGAGCTTACAATTAAAGTAATCTTTTAATTCAAATATAACCTATTTTTAGACCCATTC TGACAATTGGATATCTGTAACTTTGAATTGAAAATAGGTGAGTTGCTTTGGAGGAGAGTCTGAATCTGACACTGGAGACT ATTGGAAGTGAGATATTATTTATTTTATAATACTTTTGAAGGATATTTAGATCTCTATATTCTGGAAGTGGCTTTATATT TGGTTTCATTTTCATTAGGGTTTTCATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAAGATTCGGCTTCAGCATA TTGACACCGGAGGCTATCTACATAGTCATGATAAGAAATACAGTCGGATTGCTGGGGGACAGCAGGAGGTGAGATTGCCT AGAATATAAAAAATCTTCTATTCCCTTTAATCAATATTTTATGAAATTGCAGATATGCAAATAAATTTTCATATTCCCTG GAAAAAATTGGGTACTTACTGCTTCCAGTTAATCAGACATATTTAAAAGTCTGTTGCTTGATTTTTTAGAGTTCATTAAC AATGAAAAGTGGTGGTGATGATGATATACGTGGTCGATTTTTGTAGAGATCTTGCTATATTATTATATGTAACTAAAATG GGTTATGATTTGTCATTTATTGTATTTTACTAGGTATGTGCAGTTCGTGAAAAGCGTGCGGACAATGTCTGGTTGGCAGC TGAAGGTGTCTATCTTCCGGTTACTGAAAGCAAATAGATCATTAGTATCAATCTATACTTTTCCAAATGGTTATCATGGA TTTTGGACTGGGTGGCTGGGAGATCAGTACTGATCTTAGATGCAGATTGTCTATTAAATGAAAAAAATGCACGAGCTCTT TTAGGATGATATAATGATAGTGATATTTTTGTCATAGGTTCACATTATGCAGTAACTGTAAGCCCCTTTCCCCGGCAGAA AATACTTATATCCCTGTATCTGTTATTTTATTATAAAATGTGCTACTGCTAATTGATATTTCCTCTAATAGGACTAAGTG TGTGTTTGGAAAACCCATTCAGGATCCACGTTTGATCCTGATCCACGTTTACAGAAGCAAAAAATAGTTGCTTTTGGATT TCTGGATCCACGTTTGGCTTCTCCAGATTTGAAACCAAACACACACTAACATGGATGAATTGACAGCAATGGAACTTCAT TTCTTTTTCATCTTGGCATATAATCAATTCAGTATTGAATTGTCAATTCAAAGTTAATTCAGTGATACAATATCAATGTC ACATGTAAAGTTTCATTATTGGCTTGTTGCTGTAGCTTTACACAGCTACTGAATCTAATGAAGTAATGGTCCCATAGGCA GCATTAAATTAGATTCAGTATGCTTACTGTTCTTATATTTTACTAGTTTTTATCAAAGATCCTTCAAAAATAAAGTACTT ATATTAGTTTCTTACTGGAGTCCCAGTAGAAATTCTTCAG
CDS sequence (LotjaGi1g1v0378400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCGGATTCTTCGCTTTCGCTCTCTTCCTCTTCCTCTCCCTCGATTCTGAATTCTCCTTCTCTCCTTCTTCCTC CGCTTCCGCCTCCGCATCTACCTCCGCCGCTTCCTCCGAAGGCGTCGAGGTGCAGGTTACTTATGGATCCGTTTTGAAGC TTATGCACGAGAAGACGAAATTCCGGTTGCATTCTCATGATGTGCCGTATGGTTCTGGAAGTGGACAGCAATCTGTTACT GGTTTTCCTGATGTTGATGATGCCAACAGTTACTGGATTGTGAGGCCTGAGCCAGGAACTGGTGCTAAACAAGGTGATGC CATAAAAAGTGGCACCATCATTAGATTGCAGCATATGAGGACCAGGAAGTGGCTGCACAGCCATTTGCATGCATCCCCAA TATCAGGCAATCTCGAGGTGAGTTGCTTTGGAGGAGAGTCTGAATCTGACACTGGAGACTATTGGAAGGTTTTCATAGAA GGAAGTGGAAAGACTTGGAAGCAGGATCAGAAGATTCGGCTTCAGCATATTGACACCGGAGGCTATCTACATAGTCATGA TAAGAAATACAGTCGGATTGCTGGGGGACAGCAGGAGGTATGTGCAGTTCGTGAAAAGCGTGCGGACAATGTCTGGTTGG CAGCTGAAGGTGTCTATCTTCCGGTTACTGAAAGCAAATAG
Protein sequence (LotjaGi1g1v0378400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALGFFAFALFLFLSLDSEFSFSPSSSASASASTSAASSEGVEVQVTYGSVLKLMHEKTKFRLHSHDVPYGSGSGQQSVT GFPDVDDANSYWIVRPEPGTGAKQGDAIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESESDTGDYWKVFIE GSGKTWKQDQKIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCAVREKRADNVWLAAEGVYLPVTESK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 226 | 226 | 1.1E-132 | – | |
| PANTHER | 1 | 226 | 226 | 1.1E-132 | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 32 | 18 | - | – | |
| Gene3D | 29 | 226 | 198 | 5.5E-67 | – | |
| Phobius | 33 | 226 | 194 | - | – | |
| ProSiteProfiles | 43 | 97 | 55 | 14.158 | ||
| SMART | 43 | 97 | 55 | 1.8E-10 | ||
| SUPERFAMILY | 44 | 217 | 174 | 1.02E-56 | ||
| Pfam | 77 | 210 | 134 | 4.0E-15 | ||
| SMART | 105 | 160 | 56 | 5.2E-10 | ||
| ProSiteProfiles | 105 | 160 | 56 | 14.354 | ||
| SMART | 163 | 217 | 55 | 3.3E-14 | ||
| ProSiteProfiles | 163 | 217 | 55 | 12.42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0378400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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