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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0378500 |
| Transcript ID | LotjaGi1g1v0378500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein 7; TAIR: AT4G31890.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12; TrEMBL-Plants: tr|G7J9V6|G7J9V6_MEDTR Armadillo/beta-catenin-like repeat protein; Found in the gene: LotjaGi1g1v0378500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85822784..85825888) extracted from Lotus japonicus Gifu genome v1.2.
AATAAATAAGAGGGTTGAAAAAATCTTATTCCACATGACAACCTATTTTGGCGCTCCCTCCATTTCCGTGACACGCACAC AGTTAGAAATCTCTCTCTACATTCTCTCTCACTCTGCAATGTAGGTCGCCGGAGAATGGCACAGTGTCACCGCAACCACG CCGCATCCAAAACCACCACCCACTTCCGCCTCTGGAATTCCCTCTCCGCCTCCTCCTTCCGCCGCATCATCTTCGACGCC GTCAGTTGCGGCGGAAGCTCCCGCCACCGCCACAACGGCGACGACCTCAGCACCGCCGCATCAACAGAGAGCTCAACCTC CGCTAAGCAACAACGGTTGGAGGAAGATGAGAGACCGACGGAGAAGCTATCCGATCTCCTTAACATAGCGGAGCGCGAAA CCGAGGCTGATGCGAAGAAGAAGGAAGAGACATTGTCGGAGCTGAAGCAGGTAGTGAAGGAGCTGCGCGGAGAGGATCTG ACGACGCGGCAAATCGCGGCGGCGAGAGTGAGGTTTCTGGCGAAGGAAGATTCCGAAGTGAGAGGATCCCTCGCAATGCT CGGAGCAATTCAACCACTCGTTGGAATGCTTGATTTGGAAGAAGACACTCATTCTCAGATCGCTTCTCTCTATGCGTTGC TCAATCTCGGGATCGGAAACGATGCGTTAGTTTTCCTAATTTTTCGCCATTTTCTTCGTGATTTCGATTTCTGATCTCTA TTTTTATAGGGTTCTTGAATGTTGAATCAACTGTGGAATTTTGATGTTGCAGAAACAAAGCAGCGATTGTCAAAGTTGGC GCTGTACACAAGATGCTGAAGCTCATTGAATCGAGGGAAGGTCCAGATTCATCGGTGTGTGAAGCCATTGTTGCGAATTT TCTTGGATTGAGTGCTTTGGATTCGAATAAACCGATAATTGGATCCTCTGGTGCAATACCTTTCCTAGTTAGAACCCTTC AAAATCTGTATGATGAAAAAAGTAGCAGTAGCAGCTCCCATGTTAAGCAAGATGCTCTCAGAGCTTTGTTCAACCTAACA ATCTTTCAGGCCAACGTTTCGTTTGTTTTGGAAACTGATCTCGTCGCGTTTCTGGTGAATGCGATAGGGGATATGGAAGT GAGTGAGAGAGTGCTATCGATTCTGGGCAATTTGGTGTCGAGTCCTGAGGGTAGAAAGTGTATCAGTGCTGTGAGGGATG CAATCCCAGTTCTGGTGGATGTGTTGCACTGGGTAGATTCACCAGGGTGTCAAGAGAAGGCGTCATACATTTTGATGATC ATGGCTCATAAAGCTTATGGTGACAGGCAAACCATGATTGAGGCTGGGATCGCGTCGTCGCTGCTTGAGTTGACGCTTCT GGGTACCCCACTGGCACAGAAAAGGGCTTCAAGGATATTGGGTTGTTTGAGGATAGACAAAGGGAAACAGGTTTCTGGTG CAAATGTCTCCGCACCTATTTGTGCCTCTTCGTCGTCTTTCAATGGAGGCGGTAAAGAGGAGTGTTTGGTGGAGGAGGAA GATGGGGCGACGGGGATGAGCGAGGAAAAGAAAGCGGTGAATCAATTAGTCCAGCAGAGTTTGCAGAACAACATGATGAA AATTGTGAAGAGGGCTAACTTGCGTCAAGATTTCGTTCCATCCCAGCATTTCGCTGCACTCACTTCAACCTCCACTTCAA AGAGCCTGCCATTTTGAACAATTGCTTGCAGCTGATGTAATTAGTTGAATTGAATCTCAATGCATTATAATTATACAAGT AATTGTTGCTATAAGTATATCTTTAAGGTTGTCTTGTTTTTTAGGGTGTGTGCTAAGGACAGATTCTGTTTCTTTGGCAT GAGCAAAGTGCATGAAATATTTCCATCGAACACCAAAGCTCATTGTTAATAAATCGAAAATGAGACATTCCAAGTCCAGG CTACAAAGGTGGAAAAAACCATGTCATTGAGATTGAGTTGTGTGATTTATTGTGTAGTGTAGTGAGTGGCATGACATGAA AAAATTGGATTTTTTTTGGTTTGATTCCAGTCACTTTCAAACCATAACTCCATAAGTAACACTTTTTCTTTCCAGTTGGC CTGAGTATTTGCTATCTTATTTGCAATTGTAGTTAATGATGGAAAGGGTATCGGACTTTTTCATCTTCCATGTAACAGCG ACTACTCAAGTTGAGAATCTTTCCCCTGTTCGTTTGCAGATTCCATGTGTGGAGTTTTCAGCAATCTCTGGCTTAGCAGA GTTAATTTGCTATGCATTTGCAATGAGGTTGTATTGTATGTTGTTAAATTGAATCATGATCGGACAAGTCCAATCAAATC ACTCAGAGAGTGTTGAGTAAAGGGAGAATGACGAGCTTCCATATTACTATTATTTGTTTAATGCCCCATTACTTACTACT TAGTTTACTTAATTAGTTTTCTTTTGACAGGCCTTGGATCTAATGCTTATACTACATTTTGGATCTGTGTTGAATGGAAA CATGACCTGTTCGTGGTGAATAGCATTTTCTCCGCACTACGTGACATGATGTTCGTTGTGGGTCTACAGCCATATGTAAT GTTATCTACTTCTACTTCTGACTTCTGAGTGCTTTTAATTCTGTTGACTTTTTGGTTAAATATTCTGAACGTTACTATAT AGTTTTGGATATTAAAATTGATTAGGTAGCCCTTTTAGTCATGGATAGGGTCAGTTTTCATTTACTCTTTTCTTATTATA GTTAATTTAGCCTAAGCCTGAGGTTCCAAACGCGTTCTTCCATAGTTCTATTATTTGAGCTACAGTGATTTCTTAGACAA TTAAAAATTGGGCAATTGACAAAGCAGACAATGACGTGAAATCTAATGTCTACTACTCACTTTTGGCTACGAATTTTGGC GGATTCTAATTGCAATATGAAATTTAGGTATAACTATGTAATGAAAATGCTATGAAAATATTTCATATAAAAGTGATGTT GTTCTACACTTCTATCTTCACCTATGTCGGTCACAGTGATTAATAGTGATTGTTTAAACCTTTGAGGTCGAAAGTTCAAT TCTTAAGAGACGCACTCTTGAAGATATTTTTGACATTTACCACACTCGAGTCAAGTAAAATTATC
CDS sequence (LotjaGi1g1v0378500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACAGTGTCACCGCAACCACGCCGCATCCAAAACCACCACCCACTTCCGCCTCTGGAATTCCCTCTCCGCCTCCTC CTTCCGCCGCATCATCTTCGACGCCGTCAGTTGCGGCGGAAGCTCCCGCCACCGCCACAACGGCGACGACCTCAGCACCG CCGCATCAACAGAGAGCTCAACCTCCGCTAAGCAACAACGGTTGGAGGAAGATGAGAGACCGACGGAGAAGCTATCCGAT CTCCTTAACATAGCGGAGCGCGAAACCGAGGCTGATGCGAAGAAGAAGGAAGAGACATTGTCGGAGCTGAAGCAGGTAGT GAAGGAGCTGCGCGGAGAGGATCTGACGACGCGGCAAATCGCGGCGGCGAGAGTGAGGTTTCTGGCGAAGGAAGATTCCG AAGTGAGAGGATCCCTCGCAATGCTCGGAGCAATTCAACCACTCGTTGGAATGCTTGATTTGGAAGAAGACACTCATTCT CAGATCGCTTCTCTCTATGCGTTGCTCAATCTCGGGATCGGAAACGATGCAAACAAAGCAGCGATTGTCAAAGTTGGCGC TGTACACAAGATGCTGAAGCTCATTGAATCGAGGGAAGGTCCAGATTCATCGGTGTGTGAAGCCATTGTTGCGAATTTTC TTGGATTGAGTGCTTTGGATTCGAATAAACCGATAATTGGATCCTCTGGTGCAATACCTTTCCTAGTTAGAACCCTTCAA AATCTGTATGATGAAAAAAGTAGCAGTAGCAGCTCCCATGTTAAGCAAGATGCTCTCAGAGCTTTGTTCAACCTAACAAT CTTTCAGGCCAACGTTTCGTTTGTTTTGGAAACTGATCTCGTCGCGTTTCTGGTGAATGCGATAGGGGATATGGAAGTGA GTGAGAGAGTGCTATCGATTCTGGGCAATTTGGTGTCGAGTCCTGAGGGTAGAAAGTGTATCAGTGCTGTGAGGGATGCA ATCCCAGTTCTGGTGGATGTGTTGCACTGGGTAGATTCACCAGGGTGTCAAGAGAAGGCGTCATACATTTTGATGATCAT GGCTCATAAAGCTTATGGTGACAGGCAAACCATGATTGAGGCTGGGATCGCGTCGTCGCTGCTTGAGTTGACGCTTCTGG GTACCCCACTGGCACAGAAAAGGGCTTCAAGGATATTGGGTTGTTTGAGGATAGACAAAGGGAAACAGGTTTCTGGTGCA AATGTCTCCGCACCTATTTGTGCCTCTTCGTCGTCTTTCAATGGAGGCGGTAAAGAGGAGTGTTTGGTGGAGGAGGAAGA TGGGGCGACGGGGATGAGCGAGGAAAAGAAAGCGGTGAATCAATTAGTCCAGCAGAGTTTGCAGAACAACATGATGAAAA TTGTGAAGAGGGCTAACTTGCGTCAAGATTTCGTTCCATCCCAGCATTTCGCTGCACTCACTTCAACCTCCACTTCAAAG AGCCTGCCATTTTGA
Protein sequence (LotjaGi1g1v0378500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQCHRNHAASKTTTHFRLWNSLSASSFRRIIFDAVSCGGSSRHRHNGDDLSTAASTESSTSAKQQRLEEDERPTEKLSD LLNIAERETEADAKKKEETLSELKQVVKELRGEDLTTRQIAAARVRFLAKEDSEVRGSLAMLGAIQPLVGMLDLEEDTHS QIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESREGPDSSVCEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLQ NLYDEKSSSSSSHVKQDALRALFNLTIFQANVSFVLETDLVAFLVNAIGDMEVSERVLSILGNLVSSPEGRKCISAVRDA IPVLVDVLHWVDSPGCQEKASYILMIMAHKAYGDRQTMIEAGIASSLLELTLLGTPLAQKRASRILGCLRIDKGKQVSGA NVSAPICASSSSFNGGGKEECLVEEEDGATGMSEEKKAVNQLVQQSLQNNMMKIVKRANLRQDFVPSQHFAALTSTSTSK SLPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 484 | 483 | 1.8E-239 | – | |
| PANTHER | 2 | 484 | 483 | 1.8E-239 | – | |
| MobiDBLite | 39 | 75 | 37 | - | – | |
| Coils | 86 | 113 | 28 | - | – | |
| Gene3D | 101 | 249 | 149 | 1.0E-20 | ||
| SUPERFAMILY | 102 | 392 | 291 | 3.23E-35 | ||
| SMART | 132 | 173 | 42 | 14.0 | ||
| SMART | 175 | 218 | 44 | 8.9 | ||
| SMART | 219 | 267 | 49 | 0.027 | ||
| Gene3D | 250 | 390 | 141 | 9.4E-17 | ||
| SMART | 268 | 306 | 39 | 76.0 | ||
| SMART | 310 | 349 | 40 | 210.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0378500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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