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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0379000 |
| Transcript ID | LotjaGi1g1v0379000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine protein phosphatase 7 long form isogeny; TAIR: AT2G25010.1 Aminotransferase-like, plant mobile domain family protein; Swiss-Prot: sp|Q9SK32|MAIL1_ARATH Protein MAIN-LIKE 1; TrEMBL-Plants: tr|A0A0S3RPZ5|A0A0S3RPZ5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0379000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85996765..85999351) extracted from Lotus japonicus Gifu genome v1.2.
TTACTCTATTTGAATTGTATTGAAATTTCATAACATTAGTTTACTGTGTATACTTGTGGATTGCTTCAACTAGTTAGTTA CTCATTACATAGCTATTAATCTGTTTTCCTTATTTTTTCTGATAGATTATGGCGAGGACAAAGCAAACTAAGAGGGTATC GTCTGAAGAGTTGGCCGATCGTCGTGCCTATCTCCACGCTTCTCATAGGCAAGGTGATCATGATACAGATGTGTCGACTT CTCGGAAGGGGGCTAGGAAGGGGGCTCCGAAGGCGACCACTGAGGTTCCTGCCCCTGCCACTGAGGTTCCTGCCCCTGCT ACTGAGGTTCCTGCTACTGAGGTTCCTGCTCTCTCGACGCCTGAGGTTACTGCTACTGAGGTTTCTCCTCAGTCGACGCC TGAGGTTACTGCCCACGATACTGTTGAGCCTTCTACCTCTTCACTTGATATTGATGCAGTTGAGGAGCCGGAGTCAGAGT CGGGGTCTGAGTCGGGGTCGGAGTCGGGGTCTGAGTCTGAGATTGAGGGTGAGGATGTAGAGGTAGAGGATCCGAATATG CCGCCGCTCCAGAGAGATCCACCGTTTCCTGGTGGGCCGGTTGAGTTGTCACTTCTGCAGCATTACCCGGATCACATAGC GCCGTGGACGTGGCATACCCTACTAGGCACCACTGACCCTCGTTATTTTGAGCGAGGTGATTTGAGGCTTGCCACTGCTG GTACGAAGCTCGGGCTGATGACGTGTAAGGGGGACAATTACACGGAGGTCCGCTTGATTGTGGAGAGGAGCGGACTGTAT CCACTGGTCAGGTGCAGCTATGTAGAGACGGACCCAGGGCTTATATCGGCCCTTGTGGAGAGGTGGCACGAGGAGACTAG TAGTTTCCACATGCCATTCGGGGAGATGACTGTCACCCTTGACGACGTCTCCGCTCTTCTTCACATCCCGGTTGGTGGGA GATTCTACACTCCAGGAGTGGCCTCGAGATATGATGTGGCAGAGACCTGCGCTTTGCTGTTAGGGGGGGATGCAGATTTG TACATGGCTGAGTTTGATAGGCTTAGGGGTCCGACTATGAGGTTCAGCTTCTTGCGAGACCTTTACCCGAAAGCTGTTGC AGGTTTGTTTCATTCATTATCTGAACTTTTTCCAACTATTATTTATATTTACTTAATCATAATTGGTATTACATTGTAAT GTAGAGGGGCGGTACGAGCATGCAGCCAGGATGTACCTGATGCATCTTGTTGGCGCGACATTGTTCGCCGACAAGAGTGG GGGGCACTCATTCTCCGCCCGTTGGATCGGCATGCTACAGGATCTTGAGCGGGTGTCGGAGTTCGCGTGGGGCGCCATGG CCCTTGCCACGTTGTACGACCAGCTGGGACAGTCTTCTCGCAGCGGGGTCAAACAGATGGGCGGTTACACTTCCCTGTTG ATGGCCTGGGTCTTTGAGCACTTTCCAGACAGGCTCGTTCGCCGGTATGCGAACCCGGCTTACACAGAGGACCAGCCCAG AGCTCGTAGGTGGACAAAGTCACGGTCGGGGCATGCTAGGCTTGACGAGAGGCGAGTATTACTTGATGAGTTGACGGCCG ACGACGTCACTTGGACTCCATATGAGGCCCACAGGGAATGGCGACAGCGGGATGAGAGGGCTTTGTTCTCAGGCTACATT CGGTGTCCCTATCCCCCTGCTGTGCGACCTCATCTTCCGGAGCGGGTCATGCGACAGTTTGGGTATATACAGACGATCCC GCGCCACCCTAGTGAGATGGATAGATCTCCCGCAGCTGAGGCTGTTGATGCGGCATTCGCAGATTATGTGCAGTACTTGT TCCCTGAGGGCGACCCTGCTATAGAGGAGGGACAGGCTGTGGGCGGTTACATGGATTGGTACGCTAGAGTGTCTCATTGT TTCATCATACCGGATGAGAGGAGGATTGATCTCAGTGCCGTGGTAAATTTTAAATTTTATTTCTATTTTCTTTATGCACT TGTGGTTTTCTGTATGTGATTTACTAACAACGTTTTTTTTATTATTTACTTTCAGGCTGCTTTGCATAGGGCTTTAGAAG TCCTTGAGTTGTCACTTGAGGTGGATGATGCTTTGCTGCCAGGCACACAGGCCCGCGCTTTAACGGAGAGAGCACTTCGC ATCCTCCAGGACTTGGCTGGGACACAGGGCATTGCTTACACTGCTGGGAAAGGAGGTCTGGGAGCAGGTGGCCGAGCAGG TGGCCGAGCCGGTGGCCGAGCAGGTGGCCGGGAGGGCGGCAGGGCAGCAGGTGGCCGGGAGGGTGGCAGGGCAGGAGCCA GGGGAGGCCGTAGGGGTAGGGGAGGTCGTCGGGGTAGGGGACAGTAGGGGACATTAGTTGTATGAGCATTTTGTTGACAT TACTATTACGATATTAGGGGACTATGTATTTTGCACTACTATTTCGGATTAGTATGAGTTTTATGTTCACTTTAACGTAT GTTTTTTTTTTTATTTTTCACTTTTACCCTAAACCCTAATAATTTGTGAGCTTTATCTTCACTTTAACATTTTTTTTTCT TTTTCACTTTTATAATCAACCCTAATA
CDS sequence (LotjaGi1g1v0379000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACCTGATGCATCTTGTTGGCGCGACATTGTTCGCCGACAAGAGTGGGGGGCACTCATTCTCCGCCCGTTGGATCGG CATGCTACAGGATCTTGAGCGGGTGTCGGAGTTCGCGTGGGGCGCCATGGCCCTTGCCACGTTGTACGACCAGCTGGGAC AGTCTTCTCGCAGCGGGGTCAAACAGATGGGCGGTTACACTTCCCTGTTGATGGCCTGGGTCTTTGAGCACTTTCCAGAC AGGCTCGTTCGCCGGTATGCGAACCCGGCTTACACAGAGGACCAGCCCAGAGCTCGTAGGTGGACAAAGTCACGGTCGGG GCATGCTAGGCTTGACGAGAGGCGAGTATTACTTGATGAGTTGACGGCCGACGACGTCACTTGGACTCCATATGAGGCCC ACAGGGAATGGCGACAGCGGGATGAGAGGGCTTTGTTCTCAGGCTACATTCGGTGTCCCTATCCCCCTGCTGTGCGACCT CATCTTCCGGAGCGGGTCATGCGACAGTTTGGGTATATACAGACGATCCCGCGCCACCCTAGTGAGATGGATAGATCTCC CGCAGCTGAGGCTGTTGATGCGGCATTCGCAGATTATGTGCAGTACTTGTTCCCTGAGGGCGACCCTGCTATAGAGGAGG GACAGGCTGTGGGCGGTTACATGGATTGGTACGCTAGAGTGTCTCATTGTTTCATCATACCGGATGAGAGGAGGATTGAT CTCAGTGCCGTGGTAAATTTTAAATTTTATTTCTATTTTCTTTATGCACTTGTGGTTTTCTGTATGTGA
Protein sequence (LotjaGi1g1v0379000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLMHLVGATLFADKSGGHSFSARWIGMLQDLERVSEFAWGAMALATLYDQLGQSSRSGVKQMGGYTSLLMAWVFEHFPD RLVRRYANPAYTEDQPRARRWTKSRSGHARLDERRVLLDELTADDVTWTPYEAHREWRQRDERALFSGYIRCPYPPAVRP HLPERVMRQFGYIQTIPRHPSEMDRSPAAEAVDAAFADYVQYLFPEGDPAIEEGQAVGGYMDWYARVSHCFIIPDERRID LSAVVNFKFYFYFLYALVVFCM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 232 | 231 | 7.7E-22 | – | |
| PANTHER | 2 | 232 | 231 | 7.7E-22 | – | |
| Pfam | 2 | 224 | 223 | 3.0E-28 | ||
| TMHMM | 239 | 261 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0379000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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