Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0379200.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0379200
Transcript ID	LotjaGi1g1v0379200.1
Lotus japonicus genome version	Gifu v1.2
Description	PPPDE thiol peptidase family protein, putative; TAIR: AT5G25170.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp\|Q93VG8\|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr\|I3T5W0\|I3T5W0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0379200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:86020152..86023356) extracted from Lotus japonicus Gifu genome v1.2.

CTACTACTACACTTGAACCAAAGCTGGGACACGAGATGAGCATAAGTCCATAACCACCATAATAATAAATTAATAAGTTG GTGGGTACTGAACCAGCAACCACAAACCACTTTCGGCTACCGGTGGATGCCAGAGCTGCTCCCACAGCCACACCTCAAGA TTCTCCTTCTCCTTCTTCTACTTCCAAAAGCCACATACTTTTCTCATCTTCCCATTTTACCCTCAGATTCCCTCCAAATT TTCTTCCCTCTACCCCTCCCTGATTCCATTTATTTACATAAACCAAACCAAAACAAACACTACAACATAACACAACACAA AGATGCTGTCTAAACTGGTATCTGGTCCAAGGAAGAAGAAATCTGGCACTGTCCCAGTTCACCTCAACGTGTATGATCTC ACCCCTATCAATGGCTACGCCTATTGGCTTGGCCTTGGTGTCTACCATTCAGGTGTTCAAGGTAACCAACTTATTCTTTA TACTCTAATATGTGTTTCTTTCTTTAGAGAATCAGTTTTTGAACCTTAAAGTTCCATCTTTTTTTGGTGGGTAGTTCATG GTGTTGAATATGGATTTGGAGCACATGAGCATGAAACGACGGGGATTTTTGAAGTGCAGCCGAAAAACTGTCCAGGGTTT ACTTTCAGGAAATCAATTTTGATAGGTACTACGGATCTAGGACCGAGTGAGGTTCGGGAATTCATGGAGAAGCTAGCTCA AGAGTACTCCGGGAACACCTATCATCTCATCTCGAAGAATTGCAACCACTTCTGTGCTGATGTTTGTCTCAAATTAACAG GGAAATCGATTCCTCGATGGGTTAATCGACTCGCTCGACTTGGTGAGTGTCAAGTAACCAATTATCCCAAAAGCTTAAGA TGTTGGGTCATATGAATGATTTTATGTTATATTCTATAATAGACCAAATAATATTCTCTTTGTTATTATTAGCTTGTTGT ATTTTCATCCTGTTTTTGTGTTTTGGTTTGTTTTTTCACCCAAATTGCACTAATTCATAGGCTTATTAAGAAACTTATTG AGATAAGCCCAAAATAGCTTATTATAAGTACATATAATCGTTTATTCATGAGCTAATCTGAGTGTAATTGCTTATTCATA AGTTAACTTGAGGAGCTTATATATAAATAAGTTCAAAACAACATAGTTAGGTCATAAGTTATCTTCATAAGCTTACTCAA ATACTTTCATAAGTGTTTATACTATAAGATAAATTTAAATTTGCTCTTCCGAACTACAACTGTAATTTTAGTGTGATTAG GGTTTATAATTTAATTGATGAATGGTAGCTTAAACTTCGTATTGTAAATGAGATACATGATTGTGTGTGACAAGAGGACT GCTCTGCCAGCATCTATTGATATATGTAAATCATAAGCTGCTTTGATCAAGTTGCTGTTTTCTTTTCCCCATTCAATATG CACTTGCTTTGAATTCATGTTCATAATCATATGCTGCACCTTCTAAACAACTAGTAAGCTTGTCATGATTTCTGATTTTG AGTTATGCTTCTCAATATGAAGGTCTTCTCTGCAATTGTGTTCTTCCCACCGGCCTAAACGACGCAAAGGTTAGCCAAGT TACATCAGAAAGTGTTCAGGAAGGAGAAAAGAAGAAAGTAAGAAGTCAGTCTAGCAGGTATGAGGCTTCCTCCGATCCTG CGTTGTCATCTCGCCCTCGAAGTTCAGCAATTAAAAGTAGTAGCCAGAGATATTGCCGGCCTTCACCTTCATCTGTGATT AATGCTTCTTCAACATCAACATTAACAGTAAAGTAAAGCTTTAACTGGCTCTGAAATATAGTGTTTGTAAACTTTTGTAA CTGTAAACAACCTATGACGAGCAGGAAAGAAATTTTTTCATTTGCTCCATCTTTCTGTCCTGCTGTATATCGTCCATATT ATGGCAATGGTTTGCAAGAGTTGCTGTGTTGTCCTAGTTTTTAAAATGCTCTGTTTCTTCAGTGAATGGAAAAAGTCCTT TATTTCTACAATTTTGATACATGTATTATTGAATCTTGAATCATCTATGTTAGCTGATTTAGCATGTAGTTTTTTTTAAT AGGCAAATGTTAATTGTTAGTAATGTTAGTAAATTAGTTCATTCACCCGGATTTGAACCCTGACCCCTTCACCCTTAATT CCCTCAACCCTTATGTCCCTTAGCTGATTTAGCATATAGTTACTGAAGTCCGGAAAAACAAAAGACTGGACATGTAGGAG ATAGAGATAGTGATTTGAGGGAATACAGTCCATTGGTGTCCAAATTTCTGAATCTTGTACTTACAAAGATATTGTACCCA ATGATATCATATTTTGGTAGTTTTAATTTCTTGCTTTGAGATATTGTACCCAATGATATCATATTTTGGTAGTTTTAATT TCTTGCTTTGATAGTTTTTGTTTATCTTTTGTCCGTCGTCCTGGGAATTCGGTTGCAGACTACTTGGCTCGGAATGCGGC CACCTAAGTTCTCATGTGTGGGTGGAGGAGGCGCAGGCTGAGGTTTTGTCTCTTATTGACTCTGATGTATTGGCTTCAAT GCCTCGTTCACTGAGTTAATGAAAACCACTTTCAAAAAAATAAATGATATCATATTTGGATCAACTAATTTTTTCATATA ATCAATTCTAACACTTAGAAATTACTCATCAGATCCCATTCTACAGTATCATTCTCATTGATTATGAAATGGCAGGTAAG TCATGTTTGAGAAATGGGGACTTGGCAATCTAGTCATGTTTGAGAAATGGGGACTTGGCAATCTAGTCAGTGTACCCATC TTTATAGCATATGGGCAAAATTTGAAATTCATTTATTATTTGACTTTGGTAAAAGGAGTGATTGAGAATTACTGTAAGAA ACTTGTTTCATTCATTGCTTTCTACAATTAACCTAGGATATGTCAACCACTTGTTTGTCTGTGGGAGTGGTGTGAGGATT ACATATTTACCATATTTGATATTTTGATATCTAACTTAAAAAATTCAAGCTGTCGATTAGGTCAGCAAGCTACTCCTAGG AAACAACTAACAATGTTACAATACAAGCTTTCAACTTTAACTAGGAAATGTGTGATGTAAAGCATAAGCAACACAAGTTA CAACCCATCACTTATTTGTCGTTTGGTGGACATAACGTGGAGGTAAAGCATAACAGCTAATAAAGATTTAAGGCTTGGCA GAATG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0379200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGTCTAAACTGGTATCTGGTCCAAGGAAGAAGAAATCTGGCACTGTCCCAGTTCACCTCAACGTGTATGATCTCAC CCCTATCAATGGCTACGCCTATTGGCTTGGCCTTGGTGTCTACCATTCAGGTGTTCAAGTTCATGGTGTTGAATATGGAT TTGGAGCACATGAGCATGAAACGACGGGGATTTTTGAAGTGCAGCCGAAAAACTGTCCAGGGTTTACTTTCAGGAAATCA ATTTTGATAGGTACTACGGATCTAGGACCGAGTGAGGTTCGGGAATTCATGGAGAAGCTAGCTCAAGAGTACTCCGGGAA CACCTATCATCTCATCTCGAAGAATTGCAACCACTTCTGTGCTGATGTTTGTCTCAAATTAACAGGGAAATCGATTCCTC GATGGGTTAATCGACTCGCTCGACTTGGTCTTCTCTGCAATTGTGTTCTTCCCACCGGCCTAAACGACGCAAAGGTTAGC CAAGTTACATCAGAAAGTGTTCAGGAAGGAGAAAAGAAGAAAGTAAGAAGTCAGTCTAGCAGGTATGAGGCTTCCTCCGA TCCTGCGTTGTCATCTCGCCCTCGAAGTTCAGCAATTAAAAGTAGTAGCCAGAGATATTGCCGGCCTTCACCTTCATCTG TGATTAATGCTTCTTCAACATCAACATTAACAGTAAAGTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0379200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSKLVSGPRKKKSGTVPVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHETTGIFEVQPKNCPGFTFRKS ILIGTTDLGPSEVREFMEKLAQEYSGNTYHLISKNCNHFCADVCLKLTGKSIPRWVNRLARLGLLCNCVLPTGLNDAKVS QVTSESVQEGEKKKVRSQSSRYEASSDPALSSRPRSSAIKSSSQRYCRPSPSSVINASSTSTLTVK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12378:SF50 View details on PTHR12378:SF50 Search for proteins/transripts with this domain View external data on PTHR12378:SF50	1	211	211	4.0E-117	–
PANTHER	PTHR12378 View details on PTHR12378 Search for proteins/transripts with this domain View external data on PTHR12378	1	211	211	4.0E-117	IPR008580 Show description in modal box View details on IPR008580 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.90.1720.30 View details on G3DSA:3.90.1720.30 Search for proteins/transripts with this domain View external data on G3DSA:3.90.1720.30	11	173	163	2.1E-36	IPR042266 Show description in modal box View details on IPR042266 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51858 View details on PS51858 Search for proteins/transripts with this domain View external data on PS51858	17	154	138	59.646	–
SMART	SM01179 View details on SM01179 Search for proteins/transripts with this domain View external data on SM01179	17	155	139	3.0E-58	IPR008580 Show description in modal box View details on IPR008580 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05903 View details on PF05903 Search for proteins/transripts with this domain View external data on PF05903	18	151	134	9.7E-49	IPR008580 Show description in modal box View details on IPR008580 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	162	226	65	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	181	226	46	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0379200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…