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LotjaGi1g1v0379500.2

Overview

Field Value
Gene ID LotjaGi1g1v0379500
Transcript ID LotjaGi1g1v0379500.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Replication factor-A carboxy-terminal domain protein; TAIR: AT1G52950.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|P22336|RFA1_YEAST Replication factor A protein 1; TrEMBL-Plants: tr|G7LDT6|G7LDT6_MEDTR Replication factor-A carboxy-terminal domain protein; Found in the gene: LotjaGi1g1v0379500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:86079582..86083882) extracted from Lotus japonicus Gifu genome v1.2.

CTGAATTTGTTCCTGTTCCTGCTCAGCTATAGATAGAACGATGAGGTTTGAGATCTCTGAGGTTCGATCATGGTGCAATA GTTGATTTTGCATTCAGTTTTCCCAATTCTGTCTTTCATATGTATTTAGGTATGTTATGCATTCATTTGTATATTACTTG TACTCAATAGCAGTAGTTAATTAGCTGTGATCATGATTTACCTATACCTACTCCTAACTGCTCTCAGATGTAACCATACA AGAATTAGATAAAATTTGATTTAAATTTTTTTCCATCATTTGTTTTCATCATTTGCGTGAGGGATTTAGTTGGCTATGCA CGTCAATTTCTTCAGTCAGTCTGTACCATGAACAAAGTAGTACCTTTTAGGTGTCTTATGGGGGTTACTTTACACTGAAA TTTTTTCTGATGATACGTCTGTTGTTGACCAATCTGTGCACTGAAATGAGTTATGTGGTTTCTCTTTTGTTATTGAGTTG ATTAGTAGATGTTGGGTAGGTATGATGTGTAGTGAACTTGCAGAATTCTGATATTACATATCTCCCTTCTTGTCGTCCAA TAGTTGCTTACAAGTCTGAACTAGAAATTCTGACTTATCTAGCTGTTTAATTATTTAATTGTGCTTGTATGTTGCATAAG TAGTAGTGAATAGTTATAGTTATGAGGTAGTTGGTAGTTCTTAGTAGCTTGAGTGTGTTTAGTTTAGTTTATTCTGTTGA TGGTATTTTATATTACTATATCCCTCACTATATATATGTGGTTCTTTTGCTCTATGGTATTGCATATCTCACTTGTGTTC CACACAAAACACTATCTTTGTTAGCCATAAACCGAAGATGGCATCTGTTATTCCCACATTTGATAGAGTGCGTTCTATCT CTATGACAAAGAAATATTGGAGGATTAGAGTTAGGATCATTGATCTTTGGAAATTACATGAGCATATGCTTCCCCTATCT TATTCCAACATGGAGATGGTCATGATTGATAGAGAAGTATAGATAAATCTTGTTCTCTGTTGTGATATTTTTAATATGTC CCTATGTGTTCATGACTTGAAGCTTTTGTATTTTTTGTTATCTTGAGTATTGTTCATATGTTAACAGTCTTGAACTAAGT GTATCTATCTGATATCAGGGTGAAAAGATGGAAGCAGCTGTATCAAAATTAGATCCTATTACTGAAAAGCTTGAGGAGGG TGCTGTTTATGAGATATCAAACTTCTTGATCGTTCAGAATACCGGATCTCAACGCTATACAAGGCATTCTTTCAGAATAA TTTTGCATACTTCTACTAGAATTGTCCCAGCAAAGGATGATCGTATTCCATTGCATGGGTTGTCATTTTTTCACATTCAG AATATCATGTTAGTGGGAGATAAATTTGGCTACTTAGTAGGTAAGTTGAGTATTATTTATTATAACTGATCTCATTGTTC AGATTTACTTATGTTTTCCTTGAGTTGATGTTAGAAATATTGTATTTTTGCATATATAAGTTAAATTTTGTATAATTAAG AAGTACTTTTTTGTTGTGTTTGTTTTTCATAGATGTAATGGGAGTGTTGTCAGCTGCATCTAGGGTCAAACTTCTGATCA AGGGTAATAGGATCTATAAGATGATGGTTATTGATATAATGGATTTAACGTAAGTCAGATTTAGTTATTTGTTTATTCAT ATTTTGTGATATTTTCATATTGTTTTTTTGTTGTTGTGTAAGTTAGTATGTCAGATAGATTATTCTAATCTTTGTTTTAA TTATGCAGTGGGAAGTGTAGTTGTGTGCTGGTTGGTGATATAGTGGAAAGTATTTCTGAATACCTTAGTAAGGATTGGGT AAATAGGCCTACTATTGGTTTACGTTATGTTGATGTAAGAAAGGTTGATGGTGAGTTTATGTTCTAATGTTTTAATATAA GTTAACAGTTCAACTTTTTAATTTTAGTTATACTTATTACTAACTCCTTTTAGTTATAAATTTGACATTTGAATGATATA TATTTGTAGGCAAAGTTAAGATTAATTGCATCCCATACGTTTCCAAGATTTACATCAATCATGTGTATGAAGAAGATTGG ATAACGGGGGATAGGTATGAGATTTTTGAGGTTTTTGAAGTTAGATTAGAAAATTTGTTCCTCAATGAATGAAACTAATA TTTTAATTGATCCTTAGGTTTATTGGTCTGGAATCAGATATTCCTGTTGAATATATTTGTAGCCCTGATTTGAGTTTTGA CATTAAAGACGATATGGTTGGCTCTAACTCAATGAGAACTGTTGCTGAATTATTGACTGTTAAACAGGTCAGTGAATGCA TGTATATTACATATTTTTAGGGTAAAATATGTTTTAGGTTAATGATGTTTAAATTTGTCTAGAACAACAACATAGTTAAA TCTTTATTGGAACTACATTTCAGTGATCTAATTGATGTCTACATTCCTAATTTCACAGCGAGGTGTTGCGGTTGTTAAAG CTTGTATCAATGCATTTATTAATGATTGCCCATGGTCTTATAATTCATGTTGGTGTCATATGGAACTCCAGATGGAAAAT GGTGCTTATAGGTGCAATAGGTGTTATCGTGACATTGGCAAAACTGTCAGGAGGTTAAATCTGTGTTAAGTTATTAATAT GTTTCTTAGTTGAATATGTATTATAAGTCTTTTGTATACTATACTGTTTTTATCATTCAGTAATAGTCTTTTATTGTGTT AGGTATAAAATTCAGCTGGAAGTGTTTGATGGCTATGATAACACCATATTTGTGCTTAATGATGCTCAAGCAAATCAATG TGTTGGTATTCAATGCGAGGATTTACTTAATTTGAATGAGGTTTGATCATTTGTTGTTGGTTCATTTTATTGTTTGAATT TATATTATGGCCAAGTACTTAAGATTATTGTGGAAGTAAATTTTGATTGTATGTATTCAAATGTAGAAGAATGCTGTTCC TGGTAGATATCCGTTGATACTCCAAGAGAAACTGCTTAGTAAAGAATTGCTGTTCAAGGTTCGTACGGGTGCTGGTACAA CGTATTATGGTGAACAGACATTTGAGGTGCTGGCTATTTGTGATGATGTTGGTGTGATCTCCAACTTTAGTCGTAGTGAA GCATTCCTCACACCTGTTAAGGTATATTTATAGTCTGTATTATTAAGTTAGTTGCTTAATGATTTATTTAGTGTTAAAAT GATTCATTTCAAGTTTGATAGTTGGAAGTCTGATGCATGACTTATACCTTATTGATATGTTTTGTGATTTATATAGGCTA AGTTTTGTCCGCCTTTCACTCAGTTTGAAGAAATTTGTGATGGTCATGATACTGAAGATAATGGAGTTGCGAAGCTTAAA GAAACAGTCCATTGTGGTAGTAGCAATATTGGGGTAATACATTCCTTGGGTTGTCTATCTGACTCTACTCATTCATCCAT TAACCAAGTTATTGTTCATCGTCCGCTGAAAAGGAAATTGATGGCAGAATTTCAAGATTCTGAGAATGGTTGTGGTCAGT TACTTCAGTATGTTGATCAGTGTGGTGGGAGTAAATTGGTTGAGGAGTATAAGTCATTTTCTAAAGGGAATTGTAGTGGA ATCCAGCCTATTCCTTCTGATTGCAAAAGTCTGGAAGATGATGTGGAACATGTTAAGGGTCAAAGTTGCAAAAGTCAGAA TTGCAAGCTAATTGAATAGGGTATGGACTTCTGTGTTGAATCTGGTCATGATGTTTATGTTCAAGATAGTAACAAATCTT TGGTTGGCTACCATTGTTTGAAGATGTTTAGTTCTATTGGTGGTGTCTCAGGTTTGAAGGAAGAGGAGGTGAAGGTAGCT GGGGTAGTTGATTTGGAAAGCTTGGACCATGAAGGTGAAGAATTGTCTGAACAAGAATTTGGAAGGAATGAGTTAATTAG TGTAACTGATTCATCTTCCAGTGATAATTTTGAGATTCTGGTGGAAGACAAGGATCAAGGAGGGGACTGCATTGAAGTTA TATATCTATCAGACTAATTGGGCTTATCAGATCTGTTTAGTAGTTGTGTGCCTTTTTTGTATAATATGTTGGCATCCTTT AGCTTATCTTTTTGTTAGTAGTAAGGTCATGCTGGACGCCATGGGTATTTTGTTTTATTTGTAAAATTCCTTACTATTAT TTTGTAATTTAGTGTTCTATCAGATCTATATTTTGATGTAAGTTTGGACGGATCTAATTTGATGATATTTCTGTTTATGT ATGTGACTATTAGTAAGTGTATGGACATTTACATGTGTAATTTTTAGTAGATCTTATTCTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0379500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGCAGCTGTATCAAAATTAGATCCTATTACTGAAAAGCTTGAGGAGGGTGCTGTTTATGAGATATCAAACTTCTT GATCGTTCAGAATACCGGATCTCAACGCTATACAAGGCATTCTTTCAGAATAATTTTGCATACTTCTACTAGAATTGTCC CAGCAAAGGATGATCGTATTCCATTGCATGGGTTGTCATTTTTTCACATTCAGAATATCATGTTAGTGGGAGATAAATTT GGCTACTTAGTAGATGTAATGGGAGTGTTGTCAGCTGCATCTAGGGTCAAACTTCTGATCAAGGGTAATAGGATCTATAA GATGATGGTTATTGATATAATGGATTTAACTGGGAAGTGTAGTTGTGTGCTGGTTGGTGATATAGTGGAAAGTATTTCTG AATACCTTAGTAAGGATTGGGTAAATAGGCCTACTATTGGTTTACGTTATGTTGATGTAAGAAAGGTTGATGGCAAAGTT AAGATTAATTGCATCCCATACGTTTCCAAGATTTACATCAATCATGTGTATGAAGAAGATTGGATAACGGGGGATAGGTT TATTGGTCTGGAATCAGATATTCCTGTTGAATATATTTGTAGCCCTGATTTGAGTTTTGACATTAAAGACGATATGGTTG GCTCTAACTCAATGAGAACTGTTGCTGAATTATTGACTGTTAAACAGCGAGGTGTTGCGGTTGTTAAAGCTTGTATCAAT GCATTTATTAATGATTGCCCATGGTCTTATAATTCATGTTGGTGTCATATGGAACTCCAGATGGAAAATGGTGCTTATAG GTGCAATAGGTGTTATCGTGACATTGGCAAAACTGTCAGGAGGTATAAAATTCAGCTGGAAGTGTTTGATGGCTATGATA ACACCATATTTGTGCTTAATGATGCTCAAGCAAATCAATGTGTTGGTATTCAATGCGAGGATTTACTTAATTTGAATGAG AAGAATGCTGTTCCTGGTAGATATCCGTTGATACTCCAAGAGAAACTGCTTAGTAAAGAATTGCTGTTCAAGGTTCGTAC GGGTGCTGGTACAACGTATTATGGTGAACAGACATTTGAGGTGCTGGCTATTTGTGATGATGTTGGTGTGATCTCCAACT TTAGTCGTAGTGAAGCATTCCTCACACCTGTTAAGGCTAAGTTTTGTCCGCCTTTCACTCAGTTTGAAGAAATTTGTGAT GGTCATGATACTGAAGATAATGGAGTTGCGAAGCTTAAAGAAACAGTCCATTGTGGTAGTAGCAATATTGGGGTAATACA TTCCTTGGGTTGTCTATCTGACTCTACTCATTCATCCATTAACCAAGTTATTGTTCATCGTCCGCTGAAAAGGAAATTGA TGGCAGAATTTCAAGATTCTGAGAATGGTTGTGGTCAGTTACTTCAGTATGTTGATCAGTGTGGTGGGAGTAAATTGGTT GAGGAGTATAAGTCATTTTCTAAAGGGAATTGTAGTGGAATCCAGCCTATTCCTTCTGATTGCAAAAGTCTGGAAGATGA TGTGGAACATGTTAAGGGTCAAAGTTGCAAAAGTCAGAATTGCAAGCTAATTGAATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0379500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEAAVSKLDPITEKLEEGAVYEISNFLIVQNTGSQRYTRHSFRIILHTSTRIVPAKDDRIPLHGLSFFHIQNIMLVGDKF GYLVDVMGVLSAASRVKLLIKGNRIYKMMVIDIMDLTGKCSCVLVGDIVESISEYLSKDWVNRPTIGLRYVDVRKVDGKV KINCIPYVSKIYINHVYEEDWITGDRFIGLESDIPVEYICSPDLSFDIKDDMVGSNSMRTVAELLTVKQRGVAVVKACIN AFINDCPWSYNSCWCHMELQMENGAYRCNRCYRDIGKTVRRYKIQLEVFDGYDNTIFVLNDAQANQCVGIQCEDLLNLNE KNAVPGRYPLILQEKLLSKELLFKVRTGAGTTYYGEQTFEVLAICDDVGVISNFSRSEAFLTPVKAKFCPPFTQFEEICD GHDTEDNGVAKLKETVHCGSSNIGVIHSLGCLSDSTHSSINQVIVHRPLKRKLMAEFQDSENGCGQLLQYVDQCGGSKLV EEYKSFSKGNCSGIQPIPSDCKSLEDDVEHVKGQSCKSQNCKLIE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.40.50.140
3 58 56 1.7E-5 –
Pfam
PF02721
11 56 46 9.0E-5
IPR003871
PANTHER
PTHR23273
12 379 368 3.1E-41 –
PANTHER
PTHR23273:SF37
12 379 368 3.1E-41 –
Gene3D
G3DSA:2.40.50.140
59 184 126 7.2E-10 –
Gene3D
G3DSA:2.40.50.140
210 364 155 1.3E-13 –
SUPERFAMILY
SSF50249
232 352 121 5.82E-11
IPR012340
Pfam
PF08646
235 356 122 3.3E-9
IPR013955

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0379500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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