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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003871
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 152 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.767s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0059129.1
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr0 19526740 19527595 -
2 domain predictions
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Lj0g3v0078319.1
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357450467|ref|XP_003595510.1| chr0 30137216 30139681 +
2 domain predictions
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Lj0g3v0094279.1
n.a. Replication factor A protein [Medicago truncatula] gi|357470041|ref|XP_003605305.1| chr0 39585889 39588815 +
2 domain predictions
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Lj0g3v0101129.2
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr0 42834322 42835845 +
2 domain predictions
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Lj0g3v0101139.1
n.a. Replication factor A protein [Medicago truncatula] gi|357491997|ref|XP_003616287.1| chr0 42837654 42840213 +
2 domain predictions
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Lj0g3v0101139.2
n.a. Replication factor A protein [Medicago truncatula] gi|357491997|ref|XP_003616287.1| chr0 42837654 42840213 +
2 domain predictions
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Lj0g3v0149869.1
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357450467|ref|XP_003595510.1| chr0 69539944 69542926 +
2 domain predictions
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Lj0g3v0165289.1
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr0 78485896 78486117 -
2 domain predictions
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Lj0g3v0165299.1
n.a. n.a. chr0 78485896 78486117 -
2 domain predictions
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Lj0g3v0203129.1
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357459975|ref|XP_003600269.1| chr0 100648725 100649219 +
2 domain predictions
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Lj0g3v0211089.1
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr0 106279182 106279751 +
2 domain predictions
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Lj0g3v0256169.1
n.a. Replication factor A protein [Medicago truncatula] gi|357519361|ref|XP_003629969.1| chr0 133040369 133041043 -
2 domain predictions
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Lj0g3v0288359.1
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357450467|ref|XP_003595510.1| chr0 149851513 149851925 +
2 domain predictions
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Lj0g3v0297169.1
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357459975|ref|XP_003600269.1| chr0 154395342 154395786 +
2 domain predictions
 –
Lj0g3v0305089.1
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357450467|ref|XP_003595510.1| chr0 158942226 158943693 -
2 domain predictions
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Lj0g3v0327109.3
n.a. Coiled-coil domain-containing protein [Medicago truncatula] gi|357498253|ref|XP_003619415.1| chr0 170991137 170994244 -
2 domain predictions
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Lj0g3v0327239.1
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr0 171091592 171093390 +
2 domain predictions
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Lj0g3v0341019.1
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr0 178649767 178653968 +
2 domain predictions
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Lj0g3v0347529.3
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357459975|ref|XP_003600269.1| chr0 182349198 182353260 +
2 domain predictions
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Lj1g3v1782130.1
n.a. Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] gi|87241182|gb|ABD33040.1| chr1 20665677 20667081 +
2 domain predictions
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Lj1g3v2095720.1
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr1 24928515 24929859 -
2 domain predictions
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Lj1g3v2372400.1
n.a. Replication factor A protein [Medicago truncatula] gi|357441137|ref|XP_003590846.1| chr1 27887982 27889602 -
2 domain predictions
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Lj1g3v2372400.2
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr1 27888625 27889602 -
2 domain predictions
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Lj1g3v2873800.1
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr1 32494851 32499367 +
2 domain predictions
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Lj1g3v3385890.1
n.a. Replication factor A protein [Medicago truncatula] gi|357491997|ref|XP_003616287.1| chr1 39069788 39081563 +
2 domain predictions
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Lj1g3v3643280.2
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr1 42015974 42018561 -
2 domain predictions
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Lj1g3v3847250.1
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357459975|ref|XP_003600269.1| chr1 44223654 44226761 +
2 domain predictions
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Lj1g3v4691670.2
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357450467|ref|XP_003595510.1| chr1 55602882 55604269 +
2 domain predictions
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Lj2g3v0889040.1
n.a. Coiled-coil domain-containing protein [Medicago truncatula] gi|357498253|ref|XP_003619415.1| chr2 13579754 13582546 +
2 domain predictions
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Lj2g3v0889040.4
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr2 13579754 13582546 +
2 domain predictions
 –
Lj2g3v2400310.2
n.a. Coiled-coil domain-containing protein [Medicago truncatula] gi|357498253|ref|XP_003619415.1| chr2 34144596 34148704 +
2 domain predictions
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Lj2g3v2661850.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459409|ref|XP_003599985.1| chr2 35981933 35983462 -
2 domain predictions
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Lj3g3v0755020.1
n.a. Replication factor A protein [Medicago truncatula] gi|357470041|ref|XP_003605305.1| chr3 8677044 8679682 -
2 domain predictions
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Lj3g3v2320520.1
n.a. Replication factor A protein [Medicago truncatula] gi|357470041|ref|XP_003605305.1| chr3 28987055 28989640 -
2 domain predictions
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Lj3g3v2921000.1
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357450467|ref|XP_003595510.1| chr3 36411179 36412927 +
2 domain predictions
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Lj4g3v1708610.1
n.a. Replication factor A protein [Medicago truncatula] gi|357451089|ref|XP_003595821.1| chr4 24612309 24615264 -
2 domain predictions
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Lj4g3v2580390.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459409|ref|XP_003599985.1| chr4 34681658 34683592 -
2 domain predictions
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Lj4g3v3097120.1
n.a. Replication factor-a protein 1 (Rpa1) family protein [Medicago truncatula] gi|357468621|ref|XP_003604595.1| chr4 41131300 41135413 +
2 domain predictions
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Lj5g3v1999220.1
n.a. Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|357450467|ref|XP_003595510.1| chr5 28135881 28138304 +
2 domain predictions
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Lj5g3v2152700.2
n.a. Replication factor A protein [Medicago truncatula] gi|357491997|ref|XP_003616287.1| chr5 30810413 30814349 -
2 domain predictions
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Lj5g3v2152700.3
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr5 30810413 30815875 -
2 domain predictions
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Lj6g3v0727840.1
n.a. Replication factor A protein [Medicago truncatula] gi|357516559|ref|XP_003628568.1| chr6 6924292 6927032 +
2 domain predictions
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Lj6g3v0884310.1
n.a. Replication factor A protein [Medicago truncatula] gi|357491997|ref|XP_003616287.1| chr6 8707885 8713002 +
2 domain predictions
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Lj6g3v0884310.3
n.a. Replication factor A protein [Medicago truncatula] gi|357491997|ref|XP_003616287.1| chr6 8710536 8713002 +
2 domain predictions
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LotjaGi1g1v0079100_LC.1
n.a. Replication factor-A-like protein; TAIR: AT2G05642.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C; TrEMBL-Plants: tr|G7LDT6|G7LDT6_MEDTR Replication factor-A carboxy-terminal domain protein; Found in the gene: LotjaGi1g1v0079100_LC LjG1.1_chr1 11410327 11414157 -
2 domain predictions
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LotjaGi1g1v0085300_LC.1
n.a. DUF223 domain protein; TAIR: AT2G05642.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q1IV16|EX7L_KORVE Exodeoxyribonuclease 7 large subunit; TrEMBL-Plants: tr|A0A072TRH9|A0A072TRH9_MEDTR Animal RPA1 domain protein; Found in the gene: LotjaGi1g1v0085300_LC LjG1.1_chr1 12308793 12310587 +
2 domain predictions
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LotjaGi1g1v0096700_LC.1
n.a. DUF223 domain protein; TAIR: AT2G05642.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q9E784|L_BEFVB RNA-directed RNA polymerase L; TrEMBL-Plants: tr|G7K1P7|G7K1P7_MEDTR Replication factor-A carboxy-terminal domain protein; Found in the gene: LotjaGi1g1v0096700_LC LjG1.1_chr1 14670730 14672940 +
2 domain predictions
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LotjaGi1g1v0096900_LC.1
n.a. Replication factor A; TAIR: AT1G52950.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C; TrEMBL-Plants: tr|I3S126|I3S126_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0096900_LC LjG1.1_chr1 14689905 14692704 +
2 domain predictions
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LotjaGi1g1v0110100_LC.1
n.a. DUF223 domain protein; TAIR: AT1G52950.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C; TrEMBL-Plants: tr|G7KLG4|G7KLG4_MEDTR DNA primase; Found in the gene: LotjaGi1g1v0110100_LC LjG1.1_chr1 17219292 17223610 -
2 domain predictions
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LotjaGi1g1v0110100_LC.2
n.a. DUF223 domain protein; TAIR: AT1G52950.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C; TrEMBL-Plants: tr|G7KLG4|G7KLG4_MEDTR DNA primase; Found in the gene: LotjaGi1g1v0110100_LC LjG1.1_chr1 17219454 17223400 -
2 domain predictions
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